RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 KTN1-AS1Q86SY8 53 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 CLVS1Q8IUQ0 354 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-210ENST00000471439 MGST2Q99735 147 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 RSL24D1Q9UHA3 163 aaKnown RBP1.17□□□□□ -2.22
VPS13A-210ENST00000471439 AP4S1Q9Y587 144 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 ARL2-SNX15V9GYD0 113 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 LEPROTO15243 131 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 TMBIM6P55061 237 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 MAGOHP61326 146 aaKnown RBP1.16□□□□□ -2.22
VPS13A-210ENST00000471439 NCS1P62166 190 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 Q5XG85 94 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 AKAP14Q86UN6 197 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 FAM167A-AS1Q96KT0 104 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 PFDN5Q99471 154 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 LYRM2Q9NU23 88 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-210ENST00000471439 COPZ2Q9P299 210 aa1.16□□□□□ -2.22
VPS13A-210ENST00000471439 INMT-MINDY4F8WBC2 141 aa1.15□□□□□ -2.23
VPS13A-210ENST00000471439 DEFB107AQ8IZN7 70 aa1.15□□□□□ -2.23
VPS13A-210ENST00000471439 OR10AG1Q8NH19 301 aa1.15□□□□□ -2.23
VPS13A-210ENST00000471439 CIB3Q96Q77 187 aaPredicted RBP1.15□□□□□ -2.23
VPS13A-210ENST00000471439 A0A1B0GW54 56 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 HMSDA8MTL9 139 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 DISC1C4P0D8 188 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 GNG5P63218 68 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 FABP9Q0Z7S8 132 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 NIT2Q9NQR4 276 aa1.14□□□□□ -2.23
VPS13A-210ENST00000471439 EFCAB10A6NFE3 127 aa1.13□□□□□ -2.23
VPS13A-210ENST00000471439 FABP5P3A8MUU1 101 aa1.13□□□□□ -2.23
VPS13A-210ENST00000471439 MGPP08493 103 aa1.13□□□□□ -2.23
VPS13A-210ENST00000471439 MIR17HGQ75NE6 70 aa1.13□□□□□ -2.23
VPS13A-210ENST00000471439 NAA38Q9BRA0 125 aaKnown RBP1.13□□□□□ -2.23
VPS13A-210ENST00000471439 TGIF2-C20orf24A0A0A6YYL0 155 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 TRBV6-5A0A0K0K1A5 114 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 NCR2O95944 276 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 SMIM17P0DL12 118 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 KLKP1Q107X0 134 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 C7orf65Q6ZTY9 151 aa1.12□□□□□ -2.23
VPS13A-210ENST00000471439 PDCD5O14737 125 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 SRP19P09132 144 aaKnown RBP1.11□□□□□ -2.23
VPS13A-210ENST00000471439 METTL15P1P0C7V9 234 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 TRGC1P0CF51 173 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 CRIP1P50238 77 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 BATFQ16520 125 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 Q1T7F1 81 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 CNBD2Q96M20 576 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 OTORQ9NRC9 128 aa1.11□□□□□ -2.23
VPS13A-210ENST00000471439 PMAIP1Q13794 54 aa1.1□□□□□ -2.23
VPS13A-210ENST00000471439 CST9LQ9H4G1 147 aa1.1□□□□□ -2.23
VPS13A-210ENST00000471439 AP3S2P59780 193 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 RAB5BP61020 215 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 CKS1BP61024 79 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 HIST1H4AP62805 103 aaKnown RBP1.09□□□□□ -2.23
VPS13A-210ENST00000471439 UBE2L3P68036 154 aaKnown RBP1.09□□□□□ -2.23
VPS13A-210ENST00000471439 SPANXN1Q5VSR9 72 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 LCA10Q71F78 164 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 OR5H6Q8NGV6 325 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 AP3S1Q92572 193 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 AP1S3Q96PC3 154 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 PSENENQ9NZ42 101 aa1.09□□□□□ -2.23
VPS13A-210ENST00000471439 TRBV20OR9-2A0A075B6H5 130 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 A0A087WSZ3 146 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 TRAV1-2A0A0B4J238 106 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 SLC25A6P12236 298 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 AKR1C3P42330 323 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 H1FX-AS1Q4G0G2 97 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 FAM74A1Q5RGS3 127 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 TMEM14EPQ6UXP3 125 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 Q6ZUT4 128 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 WFDC13Q8IUB5 93 aa1.08□□□□□ -2.24
VPS13A-210ENST00000471439 TRBV10-2A0A0K0K1G8 114 aa1.07□□□□□ -2.24
VPS13A-210ENST00000471439 ETDCA0A1B0GVM5 59 aa1.07□□□□□ -2.24
VPS13A-210ENST00000471439 TCRBV3S1A0A5B6 114 aa1.07□□□□□ -2.24
VPS13A-210ENST00000471439 PLAC4Q8WY50 150 aa1.07□□□□□ -2.24
VPS13A-210ENST00000471439 TOMM7Q9P0U1 55 aa1.07□□□□□ -2.24
VPS13A-210ENST00000471439 F8VRH5 84 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 TCL1BO95988 128 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 SPRR1AP35321 89 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 SPINK7P58062 85 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 IFITM2Q01629 132 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 CROCCP2Q86T23 111 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 PRR15Q8IV56 129 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 MBD3L1Q8WWY6 194 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 RPL39LQ96EH5 51 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 GGACTQ9BVM4 153 aa1.06□□□□□ -2.24
VPS13A-210ENST00000471439 MRPS26Q9BYN8 205 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 WDR61Q9GZS3 305 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 RNASE7Q9H1E1 156 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 LSM2Q9Y333 95 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 LSM5Q9Y4Y9 91 aaKnown RBP1.06□□□□□ -2.24
VPS13A-210ENST00000471439 LOC100130705A0A1B0GUX0 176 aa1.05□□□□□ -2.24
VPS13A-210ENST00000471439 I3L3M4 83 aa1.05□□□□□ -2.24
VPS13A-210ENST00000471439 CCL20P78556 96 aa1.05□□□□□ -2.24
VPS13A-210ENST00000471439 ALKAL2Q6UX46 152 aa1.05□□□□□ -2.24
VPS13A-210ENST00000471439 MT1LQ93083 61 aa1.05□□□□□ -2.24
VPS13A-210ENST00000471439 TRAV9-1A0A075B6T8 112 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 C7orf77A4D0Y5 90 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 SSSCA1O60232 199 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 CXCL1P09341 107 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 ZNF345Q14585 488 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 SCGB2B2Q4G0G5 96 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 148 ms