RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PSCAO43653 123 aa12.87□□□□□ -0.35
HMGA1-205ENST00000447654 SYCNQ0VAF6 134 aa12.86□□□□□ -0.35
HMGA1-205ENST00000447654 HIGD2BQ4VC39 106 aa12.86□□□□□ -0.35
HMGA1-205ENST00000447654 ATRQ13535 2644 aa12.86□□□□□ -0.35
HMGA1-205ENST00000447654 F8P00451 2351 aa12.85□□□□□ -0.35
HMGA1-205ENST00000447654 A0A0J9YWU9 116 aa12.84□□□□□ -0.35
HMGA1-205ENST00000447654 NDUFB1O75438 58 aa12.84□□□□□ -0.35
HMGA1-205ENST00000447654 UBE2AP49459 152 aa12.84□□□□□ -0.35
HMGA1-205ENST00000447654 LINC00588Q9Y4M8 146 aa12.84□□□□□ -0.35
HMGA1-205ENST00000447654 ZNF73O43830 326 aaPredicted RBP12.83□□□□□ -0.36
HMGA1-205ENST00000447654 C9orf116Q5BN46 136 aaPredicted RBP12.83□□□□□ -0.36
HMGA1-205ENST00000447654 LRCOL1A6NCL2 159 aa12.82□□□□□ -0.36
HMGA1-205ENST00000447654 INAFM1C9JVW0 142 aa12.82□□□□□ -0.36
HMGA1-205ENST00000447654 SMIM29Q86T20 159 aa12.82□□□□□ -0.36
HMGA1-205ENST00000447654 LINC00269Q8N2A0 174 aa12.82□□□□□ -0.36
HMGA1-205ENST00000447654 LINC00612Q8N6U2 182 aa12.82□□□□□ -0.36
HMGA1-205ENST00000447654 NDUFS5O43920 106 aa12.81□□□□□ -0.36
HMGA1-205ENST00000447654 FAM30AQ9NZY2 134 aa12.81□□□□□ -0.36
HMGA1-205ENST00000447654 ETDCA0A1B0GVM5 59 aa12.8□□□□□ -0.36
HMGA1-205ENST00000447654 CSNK1G2-AS1Q8NCQ2 148 aa12.8□□□□□ -0.36
HMGA1-205ENST00000447654 Q5VV11 94 aa12.79□□□□□ -0.36
HMGA1-205ENST00000447654 CHCHD10Q8WYQ3 142 aaPredicted RBP12.79□□□□□ -0.36
HMGA1-205ENST00000447654 RBM12B-AS1Q9P1G2 102 aa12.79□□□□□ -0.36
HMGA1-205ENST00000447654 GVQW2A0A096LPI5 108 aaPredicted RBP12.78□□□□□ -0.36
HMGA1-205ENST00000447654 A8MUN3 132 aa12.78□□□□□ -0.36
HMGA1-205ENST00000447654 CMC4P56277 68 aaPredicted RBP12.78□□□□□ -0.36
HMGA1-205ENST00000447654 LIMD2Q9BT23 127 aa12.78□□□□□ -0.36
HMGA1-205ENST00000447654 ATP11AUNQ6ZP68 121 aa12.75□□□□□ -0.37
HMGA1-205ENST00000447654 PHF5AQ7RTV0 110 aaKnown RBP12.73□□□□□ -0.37
HMGA1-205ENST00000447654 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.72□□□□□ -0.37
HMGA1-205ENST00000447654 M0R378 163 aa12.72□□□□□ -0.37
HMGA1-205ENST00000447654 C10orf25Q5T742 122 aa12.72□□□□□ -0.37
HMGA1-205ENST00000447654 CLPSL2Q6UWE3 100 aa12.72□□□□□ -0.37
HMGA1-205ENST00000447654 LINC00528Q8N1L1 170 aa12.72□□□□□ -0.37
HMGA1-205ENST00000447654 SPAG11BQ08648 103 aa12.71□□□□□ -0.37
HMGA1-205ENST00000447654 UNQ6190/PRO20217Q6UXQ8 127 aa12.71□□□□□ -0.37
HMGA1-205ENST00000447654 KLK12Q9UKR0 248 aa12.71□□□□□ -0.37
HMGA1-205ENST00000447654 IGLV5-48A0A075B6I7 105 aa12.7□□□□□ -0.38
HMGA1-205ENST00000447654 GYPEP15421 78 aa12.69□□□□□ -0.38
HMGA1-205ENST00000447654 C16orf90A8MZG2 172 aa12.68□□□□□ -0.38
HMGA1-205ENST00000447654 REG3AQ06141 175 aa12.68□□□□□ -0.38
HMGA1-205ENST00000447654 SPANXA2-OT1Q8N9U9 137 aa12.67□□□□□ -0.38
HMGA1-205ENST00000447654 C3orf84H3BNL1 204 aa12.67□□□□□ -0.38
HMGA1-205ENST00000447654 CHKB-CPT1BH3BT56 60 aa12.66□□□□□ -0.38
HMGA1-205ENST00000447654 B9D2Q9BPU9 175 aa12.66□□□□□ -0.38
HMGA1-205ENST00000447654 Q9BRP9 147 aa12.65□□□□□ -0.38
HMGA1-205ENST00000447654 Q8N9P0 234 aaPredicted RBP12.64□□□□□ -0.39
HMGA1-205ENST00000447654 ANK2Q01484 3957 aa12.64□□□□□ -0.39
HMGA1-205ENST00000447654 KPRPQ5T749 579 aaPredicted RBP12.63□□□□□ -0.39
HMGA1-205ENST00000447654 Q75L30 129 aa12.63□□□□□ -0.39
HMGA1-205ENST00000447654 A6NN06 94 aa12.62□□□□□ -0.39
HMGA1-205ENST00000447654 PRO0255Q9UI72 69 aa12.62□□□□□ -0.39
HMGA1-205ENST00000447654 PKD1L1Q8TDX9 2849 aa12.61□□□□□ -0.39
HMGA1-205ENST00000447654 HCG22E2RYF7 251 aa12.61□□□□□ -0.39
HMGA1-205ENST00000447654 ANGP03950 147 aaKnown RBP12.61□□□□□ -0.39
HMGA1-205ENST00000447654 VPREB1P12018 145 aa12.61□□□□□ -0.39
HMGA1-205ENST00000447654 KCNQ1DNQ9H478 68 aa12.61□□□□□ -0.39
HMGA1-205ENST00000447654 IGLV10-54A0A075B6I4 117 aa12.6□□□□□ -0.39
HMGA1-205ENST00000447654 X6R8D5 127 aa12.6□□□□□ -0.39
HMGA1-205ENST00000447654 A8MU10 97 aa12.59□□□□□ -0.39
HMGA1-205ENST00000447654 DEFB130BP0DP73 79 aa12.59□□□□□ -0.39
HMGA1-205ENST00000447654 DEFB130AP0DP74 79 aa12.59□□□□□ -0.39
HMGA1-205ENST00000447654 MP68P56378 58 aa12.59□□□□□ -0.39
HMGA1-205ENST00000447654 H3BPC8 53 aa12.59□□□□□ -0.39
HMGA1-205ENST00000447654 LOC101927531A0A1B0GV80 90 aa12.58□□□□□ -0.4
HMGA1-205ENST00000447654 LINC00208Q96KT6 92 aa12.58□□□□□ -0.4
HMGA1-205ENST00000447654 FBN1P35555 2871 aaKnown RBP12.57□□□□□ -0.4
HMGA1-205ENST00000447654 DSCR10P59022 87 aa12.57□□□□□ -0.4
HMGA1-205ENST00000447654 ST20-AS1Q8NBB2 130 aa12.57□□□□□ -0.4
HMGA1-205ENST00000447654 C6orf48Q9UBA6 75 aa12.57□□□□□ -0.4
HMGA1-205ENST00000447654 SPRR4Q96PI1 79 aa12.56□□□□□ -0.4
HMGA1-205ENST00000447654 STAB1Q9NY15 2570 aa12.55□□□□□ -0.4
HMGA1-205ENST00000447654 CMYA5Q8N3K9 4069 aa12.55□□□□□ -0.4
HMGA1-205ENST00000447654 PRR4Q16378 134 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 C7orf65Q6ZTY9 151 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 Q8NBF4 154 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 PRR15LQ9BU68 103 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 XAGE1AQ9HD64 81 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 DEFB4AO15263 64 aa12.54□□□□□ -0.4
HMGA1-205ENST00000447654 A0A1W2PNM2 257 aa12.53□□□□□ -0.4
HMGA1-205ENST00000447654 LCA10Q71F78 164 aa12.53□□□□□ -0.4
HMGA1-205ENST00000447654 Q8N377 158 aa12.53□□□□□ -0.4
HMGA1-205ENST00000447654 SPTSSBQ8NFR3 76 aa12.53□□□□□ -0.4
HMGA1-205ENST00000447654 CDC42SE1Q9NRR8 79 aa12.53□□□□□ -0.4
HMGA1-205ENST00000447654 DEFB135Q30KP9 77 aa12.52□□□□□ -0.4
HMGA1-205ENST00000447654 K7EQZ3 153 aa12.5□□□□□ -0.41
HMGA1-205ENST00000447654 TNP2Q05952 138 aa12.5□□□□□ -0.41
HMGA1-205ENST00000447654 APOC4P55056 127 aa12.49□□□□□ -0.41
HMGA1-205ENST00000447654 EGFEM1PQ0D2K5 195 aa12.49□□□□□ -0.41
HMGA1-205ENST00000447654 C4orf48Q5BLP8 95 aa12.49□□□□□ -0.41
HMGA1-205ENST00000447654 PRR34Q9NV39 138 aa12.49□□□□□ -0.41
HMGA1-205ENST00000447654 DNHD1Q96M86 4753 aa12.48□□□□□ -0.41
HMGA1-205ENST00000447654 A6NED7 52 aa12.47□□□□□ -0.41
HMGA1-205ENST00000447654 C1orf137Q5JT78 98 aa12.47□□□□□ -0.41
HMGA1-205ENST00000447654 A0A096LPF7 62 aa12.46□□□□□ -0.41
HMGA1-205ENST00000447654 DHRS4-AS1Q9P1J3 65 aa12.46□□□□□ -0.41
HMGA1-205ENST00000447654 Q8NAQ8 132 aa12.4□□□□□ -0.42
HMGA1-205ENST00000447654 DEFB105AQ8NG35 78 aa12.4□□□□□ -0.42
HMGA1-205ENST00000447654 TENM3Q9P273 2699 aa12.4□□□□□ -0.42
HMGA1-205ENST00000447654 LELP1Q5T871 98 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 155.6 ms