RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ITPR3Q14573 2671 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 C10orf99Q6UWK7 81 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 ZNF292O60281 2723 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 A0A0C4DFX4 3053 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 A0A096LNT2 108 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 NBEAL1Q6ZS30 2694 aa2.28□□□□□ -2.04
SYNE1-212ENST00000423061 RPL37AP8A6NKH3 93 aa2.28□□□□□ -2.04
SYNE1-212ENST00000423061 DNAH12Q6ZR08 3092 aa2.28□□□□□ -2.04
SYNE1-212ENST00000423061 CRIPTQ9P021 101 aa2.28□□□□□ -2.04
SYNE1-212ENST00000423061 LINC00167Q96N53 147 aa2.28□□□□□ -2.04
SYNE1-212ENST00000423061 CHD6Q8TD26 2715 aa2.28□□□□□ -2.05
SYNE1-212ENST00000423061 J3QKU1 62 aa2.28□□□□□ -2.05
SYNE1-212ENST00000423061 KRTAP16-1A8MUX0 517 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 RPL37AP61513 92 aaKnown RBP2.27□□□□□ -2.05
SYNE1-212ENST00000423061 CFAP46Q8IYW2 2715 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 BAHCC1Q9P281 2608 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 DEFB131BA0A096LNP1 70 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 CHD9Q3L8U1 2897 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 A0A1B0GUV1 79 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 SPINK1P00995 79 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 LY6G6DO95868 133 aa2.27□□□□□ -2.05
SYNE1-212ENST00000423061 LINC00612Q8N6U2 182 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 SPINT4Q6UDR6 99 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 REG3GQ6UW15 175 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 COL6A5A8TX70 2615 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 A0A087WSZ3 146 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 H3BPC8 53 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 MIR22HGQ0VDD5 57 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 C18orf65Q6ZTR6 163 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 A0A1B0GU69 56 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 IGLV1-51P01701 117 aa2.26□□□□□ -2.05
SYNE1-212ENST00000423061 K7EQZ3 153 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 Q6ZRX8 168 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 Q8NBF4 154 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 A0A1W2PNM2 257 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 IGLV6-57P01721 117 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 Q9BRP9 147 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 SPINK6Q6UWN8 80 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 Q6ZR54 194 aa2.25□□□□□ -2.05
SYNE1-212ENST00000423061 C7orf33Q8WU49 177 aa2.24□□□□□ -2.05
SYNE1-212ENST00000423061 IGLV9-49A0A0B4J1Y8 123 aa2.24□□□□□ -2.05
SYNE1-212ENST00000423061 DSPP15924 2871 aaKnown RBP2.24□□□□□ -2.05
SYNE1-212ENST00000423061 KMT2BQ9UMN6 2715 aaPredicted RBP2.24□□□□□ -2.05
SYNE1-212ENST00000423061 HELZ2Q9BYK8 2649 aaKnown RBP2.24□□□□□ -2.05
SYNE1-212ENST00000423061 LINC01558Q9Y6Z2 57 aa2.24□□□□□ -2.05
SYNE1-212ENST00000423061 SPANXA2-OT1Q8N9U9 137 aa2.24□□□□□ -2.05
SYNE1-212ENST00000423061 TP53AIP1Q9HCN2 124 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 CHD7Q9P2D1 2997 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 C6orf48Q9UBA6 75 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 Q8NDZ9 215 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 PRLHP81277 87 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 STAB1Q9NY15 2570 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 IGLV1-50A0A075B6I6 118 aa2.23□□□□□ -2.05
SYNE1-212ENST00000423061 KLK9Q2XQG4 91 aa2.22□□□□□ -2.05
SYNE1-212ENST00000423061 CR1P17927 2039 aa2.22□□□□□ -2.05
SYNE1-212ENST00000423061 DSCR10P59022 87 aa2.22□□□□□ -2.05
SYNE1-212ENST00000423061 ZCCHC13Q8WW36 166 aaKnown RBP2.22□□□□□ -2.05
SYNE1-212ENST00000423061 TEP1Q99973 2627 aaKnown RBP2.22□□□□□ -2.05
SYNE1-212ENST00000423061 LUZP6Q538Z0 58 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 C9orf163Q8N9P6 203 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 IGLV5-37A0A075B6J1 123 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 TEX15Q9BXT5 2789 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 HRES1P13985 223 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 ACYP2P14621 99 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 FLNCQ14315 2725 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 IGLV7-46A0A075B6I9 117 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 SETXQ7Z333 2677 aaKnown RBP2.21□□□□□ -2.06
SYNE1-212ENST00000423061 UTP20O75691 2785 aaKnown RBP2.21□□□□□ -2.06
SYNE1-212ENST00000423061 GVQW2A0A096LPI5 108 aaPredicted RBP2.21□□□□□ -2.06
SYNE1-212ENST00000423061 NBEAL2Q6ZNJ1 2754 aa2.21□□□□□ -2.06
SYNE1-212ENST00000423061 Q8N377 158 aa2.2□□□□□ -2.06
SYNE1-212ENST00000423061 NUPR2A6NF83 97 aa2.2□□□□□ -2.06
SYNE1-212ENST00000423061 DNAH10OSP0CZ25 163 aa2.2□□□□□ -2.06
SYNE1-212ENST00000423061 UQCR11O14957 56 aa2.2□□□□□ -2.06
SYNE1-212ENST00000423061 LINC01556Q5JQF7 62 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 A0A1W2PPR1 153 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 NDUFAF8A1L188 74 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 A8MWP4 228 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 UTRNP46939 3433 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 CIRBP-AS1Q8TBR5 109 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 KCNQ1DNQ9H478 68 aa2.19□□□□□ -2.06
SYNE1-212ENST00000423061 LAMA2P24043 3122 aaKnown RBP2.19□□□□□ -2.06
SYNE1-212ENST00000423061 NBEAQ8NFP9 2946 aa2.18□□□□□ -2.06
SYNE1-212ENST00000423061 STAB2Q8WWQ8 2551 aa2.18□□□□□ -2.06
SYNE1-212ENST00000423061 ITPR1Q14643 2758 aa2.18□□□□□ -2.06
SYNE1-212ENST00000423061 FAM168BA1KXE4 195 aa2.18□□□□□ -2.06
SYNE1-212ENST00000423061 RANBP2P49792 3224 aaKnown RBP2.18□□□□□ -2.06
SYNE1-212ENST00000423061 ROMO1P60602 79 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 IGKV2D-30A0A075B6S6 120 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 IGKV2-30P06310 120 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 H3BNG1 76 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 IGLV5-52A0A0A0MRZ9 124 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 IGFL1Q6UW32 110 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 IGSF10Q6WRI0 2623 aa2.17□□□□□ -2.06
SYNE1-212ENST00000423061 J3QL48 77 aa2.16□□□□□ -2.06
SYNE1-212ENST00000423061 CNBPP62633 177 aaKnown RBP2.16□□□□□ -2.06
SYNE1-212ENST00000423061 RTL8CO15255 209 aa2.16□□□□□ -2.06
SYNE1-212ENST00000423061 NIPBLQ6KC79 2804 aaeCLIP2.16□□□□□ -2.06
SYNE1-212ENST00000423061 LCE6AA0A183 80 aa2.15□□□□□ -2.06
SYNE1-212ENST00000423061 UBR5O95071 2799 aaPredicted RBP2.15□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 282.5 ms