RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LOC110117498A0A087WWA1 95 aa4.8□□□□□ -1.64
UPF2-203ENST00000397053 C9orf163Q8N9P6 203 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 KIAA1549LQ6ZVL6 1849 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 IGLV1-50A0A075B6I6 118 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 IGLV5-48A0A075B6I7 105 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 C8orf17Q9NRJ1 99 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 LINC00528Q8N1L1 170 aa4.78□□□□□ -1.64
UPF2-203ENST00000397053 Q6ZSA8 131 aa4.77□□□□□ -1.65
UPF2-203ENST00000397053 PRO0628Q9UI54 55 aa4.77□□□□□ -1.65
UPF2-203ENST00000397053 CENPFP49454 3210 aa4.77□□□□□ -1.65
UPF2-203ENST00000397053 LRP4O75096 1905 aa4.77□□□□□ -1.65
UPF2-203ENST00000397053 IGLV7-43P04211 117 aa4.76□□□□□ -1.65
UPF2-203ENST00000397053 KCNQ1DNQ9H478 68 aa4.76□□□□□ -1.65
UPF2-203ENST00000397053 ANAPC11Q9NYG5 84 aa4.76□□□□□ -1.65
UPF2-203ENST00000397053 A0A1B0GVX0 72 aa4.76□□□□□ -1.65
UPF2-203ENST00000397053 KRTAP10-11P60412 298 aa4.76□□□□□ -1.65
UPF2-203ENST00000397053 COA5Q86WW8 74 aa4.75□□□□□ -1.65
UPF2-203ENST00000397053 A0A0D9SG42 100 aa4.75□□□□□ -1.65
UPF2-203ENST00000397053 IGFL1Q6UW32 110 aa4.75□□□□□ -1.65
UPF2-203ENST00000397053 CAMK2N1Q7Z7J9 78 aa4.75□□□□□ -1.65
UPF2-203ENST00000397053 PRR15Q8IV56 129 aa4.75□□□□□ -1.65
UPF2-203ENST00000397053 COL6A5A8TX70 2615 aa4.74□□□□□ -1.65
UPF2-203ENST00000397053 CFAP46Q8IYW2 2715 aa4.74□□□□□ -1.65
UPF2-203ENST00000397053 C19orf73Q9NVV2 129 aa4.74□□□□□ -1.65
UPF2-203ENST00000397053 AKAP13Q12802 2813 aa4.74□□□□□ -1.65
UPF2-203ENST00000397053 NBEAL1Q6ZS30 2694 aa4.74□□□□□ -1.65
UPF2-203ENST00000397053 MIR22HGQ0VDD5 57 aa4.73□□□□□ -1.65
UPF2-203ENST00000397053 PSORS1C2Q9UIG4 136 aa4.73□□□□□ -1.65
UPF2-203ENST00000397053 ZNF575Q86XF7 245 aa4.73□□□□□ -1.65
UPF2-203ENST00000397053 COL5A1P20908 1838 aaPredicted RBP4.73□□□□□ -1.65
UPF2-203ENST00000397053 A8MUN3 132 aa4.72□□□□□ -1.65
UPF2-203ENST00000397053 LUZP6Q538Z0 58 aa4.72□□□□□ -1.65
UPF2-203ENST00000397053 IGLV7-46A0A075B6I9 117 aa4.72□□□□□ -1.65
UPF2-203ENST00000397053 LINC01546A6NGU7 62 aa4.71□□□□□ -1.65
UPF2-203ENST00000397053 CSNK1G2-AS1Q8NCQ2 148 aa4.71□□□□□ -1.65
UPF2-203ENST00000397053 FLNAP21333 2647 aaKnown RBP4.71□□□□□ -1.66
UPF2-203ENST00000397053 PRR34Q9NV39 138 aa4.71□□□□□ -1.66
UPF2-203ENST00000397053 Q8N1X5 172 aa4.7□□□□□ -1.66
UPF2-203ENST00000397053 CYP4F30PQ9H0H9 118 aa4.7□□□□□ -1.66
UPF2-203ENST00000397053 C15orf56Q8N910 161 aa4.7□□□□□ -1.66
UPF2-203ENST00000397053 CDC42SE1Q9NRR8 79 aa4.7□□□□□ -1.66
UPF2-203ENST00000397053 SMCPP49901 116 aaPredicted RBP4.69□□□□□ -1.66
UPF2-203ENST00000397053 A0A0G2JQZ4 141 aa4.69□□□□□ -1.66
UPF2-203ENST00000397053 A0A1W2PNN7 141 aa4.69□□□□□ -1.66
UPF2-203ENST00000397053 FAM104AQ969W3 186 aa4.68□□□□□ -1.66
UPF2-203ENST00000397053 SPRR4Q96PI1 79 aa4.68□□□□□ -1.66
UPF2-203ENST00000397053 MUC22E2RYF6 1773 aaPredicted RBP4.68□□□□□ -1.66
UPF2-203ENST00000397053 C4orf26Q17RF5 130 aa4.68□□□□□ -1.66
UPF2-203ENST00000397053 Q8N377 158 aa4.68□□□□□ -1.66
UPF2-203ENST00000397053 RPS28P62857 69 aaKnown RBP4.67□□□□□ -1.66
UPF2-203ENST00000397053 TNP2Q05952 138 aa4.67□□□□□ -1.66
UPF2-203ENST00000397053 LINC00612Q8N6U2 182 aa4.67□□□□□ -1.66
UPF2-203ENST00000397053 CENPEQ02224 2701 aa4.66□□□□□ -1.66
UPF2-203ENST00000397053 ERC2-IT1O76042 136 aa4.66□□□□□ -1.66
UPF2-203ENST00000397053 TLX1NBP0CAT3 122 aa4.66□□□□□ -1.66
UPF2-203ENST00000397053 PTPRBP23467 1997 aa4.66□□□□□ -1.66
UPF2-203ENST00000397053 CNBPP62633 177 aaKnown RBP4.64□□□□□ -1.67
UPF2-203ENST00000397053 LINC00483Q53H64 154 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 PRR26Q8N8Z3 221 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 PRO0461Q9UI25 63 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 PLA2G2DQ9UNK4 145 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 CASC10Q5T4H9 136 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 LITAFQ99732 161 aa4.64□□□□□ -1.67
UPF2-203ENST00000397053 PRRC2CQ9Y520 2896 aaKnown RBP4.63□□□□□ -1.67
UPF2-203ENST00000397053 UNC79Q9P2D8 2635 aa4.63□□□□□ -1.67
UPF2-203ENST00000397053 KRTAP10-3P60369 221 aa4.63□□□□□ -1.67
UPF2-203ENST00000397053 TEX15Q9BXT5 2789 aa4.63□□□□□ -1.67
UPF2-203ENST00000397053 KLK9Q2XQG4 91 aa4.62□□□□□ -1.67
UPF2-203ENST00000397053 CPAMD8Q8IZJ3 1885 aa4.61□□□□□ -1.67
UPF2-203ENST00000397053 GIG44P09565 113 aaPredicted RBP4.61□□□□□ -1.67
UPF2-203ENST00000397053 CSAG1Q6PB30 78 aa4.61□□□□□ -1.67
UPF2-203ENST00000397053 IGSF10Q6WRI0 2623 aa4.6□□□□□ -1.67
UPF2-203ENST00000397053 CR1P17927 2039 aa4.59□□□□□ -1.67
UPF2-203ENST00000397053 A0A096LNT2 108 aa4.59□□□□□ -1.67
UPF2-203ENST00000397053 CD164Q04900 197 aa4.59□□□□□ -1.68
UPF2-203ENST00000397053 A0A1W2PNM2 257 aa4.58□□□□□ -1.68
UPF2-203ENST00000397053 COL27A1Q8IZC6 1860 aaPredicted RBP4.58□□□□□ -1.68
UPF2-203ENST00000397053 EIF4EBP3O60516 100 aaPredicted RBP4.58□□□□□ -1.68
UPF2-203ENST00000397053 SEC61BP60468 96 aaKnown RBP4.58□□□□□ -1.68
UPF2-203ENST00000397053 Q1T7F1 81 aa4.58□□□□□ -1.68
UPF2-203ENST00000397053 KLKP1Q107X0 134 aa4.57□□□□□ -1.68
UPF2-203ENST00000397053 HRES1P13985 223 aa4.57□□□□□ -1.68
UPF2-203ENST00000397053 COL4A2P08572 1712 aa4.56□□□□□ -1.68
UPF2-203ENST00000397053 A0A1B0GU33 70 aa4.55□□□□□ -1.68
UPF2-203ENST00000397053 CHD6Q8TD26 2715 aa4.55□□□□□ -1.68
UPF2-203ENST00000397053 R4GN34 69 aa4.55□□□□□ -1.68
UPF2-203ENST00000397053 FAM229BQ4G0N7 80 aa4.54□□□□□ -1.68
UPF2-203ENST00000397053 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.54□□□□□ -1.68
UPF2-203ENST00000397053 SPANXA2-OT1Q8N9U9 137 aa4.53□□□□□ -1.68
UPF2-203ENST00000397053 LCA10Q71F78 164 aa4.52□□□□□ -1.69
UPF2-203ENST00000397053 KMT2BQ9UMN6 2715 aaPredicted RBP4.51□□□□□ -1.69
UPF2-203ENST00000397053 KRTAP1-1Q07627 177 aa4.51□□□□□ -1.69
UPF2-203ENST00000397053 SRCAPQ6ZRS2 3230 aa4.5□□□□□ -1.69
UPF2-203ENST00000397053 Q5VSD8 79 aa4.5□□□□□ -1.69
UPF2-203ENST00000397053 KRTAP1-3Q8IUG1 177 aa4.5□□□□□ -1.69
UPF2-203ENST00000397053 ZCCHC13Q8WW36 166 aaKnown RBP4.5□□□□□ -1.69
UPF2-203ENST00000397053 S4R3F8 94 aa4.5□□□□□ -1.69
UPF2-203ENST00000397053 H7BZZ5 65 aa4.5□□□□□ -1.69
UPF2-203ENST00000397053 PLAC4Q8WY50 150 aa4.49□□□□□ -1.69
UPF2-203ENST00000397053 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms