RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TRAV23DV6A0A075B6W5 121 aa7.94□□□□□ -1.14
VPS28-202ENST00000377348 A0A087X002 238 aa7.94□□□□□ -1.14
VPS28-202ENST00000377348 S100A12P80511 92 aa7.94□□□□□ -1.14
VPS28-202ENST00000377348 MUSTN1Q8IVN3 82 aa7.94□□□□□ -1.14
VPS28-202ENST00000377348 OR13C6PQ8NH95 151 aa7.94□□□□□ -1.14
VPS28-202ENST00000377348 B5MCH6 92 aa7.93□□□□□ -1.14
VPS28-202ENST00000377348 IFITM1P13164 125 aa7.92□□□□□ -1.14
VPS28-202ENST00000377348 Q6ZVH6 145 aa7.92□□□□□ -1.14
VPS28-202ENST00000377348 SMCR5Q8TEV8 140 aa7.92□□□□□ -1.14
VPS28-202ENST00000377348 ZNF73O43830 326 aaPredicted RBP7.91□□□□□ -1.14
VPS28-202ENST00000377348 LINC00518Q8N0U6 118 aa7.91□□□□□ -1.14
VPS28-202ENST00000377348 RPL13AP40429 203 aaKnown RBP7.9□□□□□ -1.14
VPS28-202ENST00000377348 PAM16Q9Y3D7 125 aa7.9□□□□□ -1.14
VPS28-202ENST00000377348 ERC2-IT1O76042 136 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 COX8AP10176 69 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 CRYGAP11844 174 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 KRTAP13-2Q52LG2 175 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 SPATA45Q537H7 98 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 COPS9Q8WXC6 57 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 SPRR4Q96PI1 79 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 C12orf57Q99622 126 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 Q9BRP9 147 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 VAMP8Q9BV40 100 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 PPDPFQ9H3Y8 114 aa7.89□□□□□ -1.15
VPS28-202ENST00000377348 Q6ZRX8 168 aa7.88□□□□□ -1.15
VPS28-202ENST00000377348 C14orf144Q96I85 54 aa7.88□□□□□ -1.15
VPS28-202ENST00000377348 FAM229BQ4G0N7 80 aa7.87□□□□□ -1.15
VPS28-202ENST00000377348 TYMSOSQ8TAI1 123 aa7.87□□□□□ -1.15
VPS28-202ENST00000377348 A6NDN8 102 aa7.86□□□□□ -1.15
VPS28-202ENST00000377348 CBY1Q9Y3M2 126 aa7.86□□□□□ -1.15
VPS28-202ENST00000377348 C3orf22Q8N5N4 141 aa7.85□□□□□ -1.15
VPS28-202ENST00000377348 ZNF706Q9Y5V0 76 aaPredicted RBP7.85□□□□□ -1.15
VPS28-202ENST00000377348 DLEU1O43261 78 aa7.84□□□□□ -1.15
VPS28-202ENST00000377348 C6orf99Q4VX62 202 aa7.84□□□□□ -1.15
VPS28-202ENST00000377348 A4D1N5 150 aa7.83□□□□□ -1.16
VPS28-202ENST00000377348 HINT1P49773 126 aaPredicted RBP7.83□□□□□ -1.16
VPS28-202ENST00000377348 GAGE2AQ6NT46 116 aa7.83□□□□□ -1.16
VPS28-202ENST00000377348 HIST1H4GQ99525 98 aa7.83□□□□□ -1.16
VPS28-202ENST00000377348 LRP2P98164 4655 aa7.82□□□□□ -1.16
VPS28-202ENST00000377348 TRAV13-2A0A0B4J235 113 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 TSPAN13O95857 204 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 COX7BP24311 80 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 ELOF1P60002 83 aaKnown RBP7.81□□□□□ -1.16
VPS28-202ENST00000377348 LINC00483Q53H64 154 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 SLC25A34Q6PIV7 304 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 ST20-AS1Q8NBB2 130 aa7.81□□□□□ -1.16
VPS28-202ENST00000377348 C2orf91Q6ZV80 131 aa7.8□□□□□ -1.16
VPS28-202ENST00000377348 PRO1933Q9H354 126 aa7.8□□□□□ -1.16
VPS28-202ENST00000377348 SMIM11BQ8TCY0 68 aa7.79□□□□□ -1.16
VPS28-202ENST00000377348 LINC00304Q8N9R0 145 aa7.78□□□□□ -1.16
VPS28-202ENST00000377348 HIGD1BQ9P298 99 aa7.78□□□□□ -1.16
VPS28-202ENST00000377348 UBR4Q5T4S7 5183 aa7.78□□□□□ -1.16
VPS28-202ENST00000377348 DHRS4-AS1Q9P1J3 65 aa7.77□□□□□ -1.17
VPS28-202ENST00000377348 IGLV9-49A0A0B4J1Y8 123 aa7.76□□□□□ -1.17
VPS28-202ENST00000377348 TRBV7-6A0A0J9YX20 115 aa7.76□□□□□ -1.17
VPS28-202ENST00000377348 A0A1B0GWB2 263 aa7.76□□□□□ -1.17
VPS28-202ENST00000377348 UQCR10Q9UDW1 63 aa7.76□□□□□ -1.17
VPS28-202ENST00000377348 LPAP08519 4548 aa7.75□□□□□ -1.17
VPS28-202ENST00000377348 MOBPQ13875 183 aa7.74□□□□□ -1.17
VPS28-202ENST00000377348 Q8NBF4 154 aa7.74□□□□□ -1.17
VPS28-202ENST00000377348 CFC1BP0CG36 223 aa7.73□□□□□ -1.17
VPS28-202ENST00000377348 CFC1P0CG37 223 aa7.73□□□□□ -1.17
VPS28-202ENST00000377348 TSTD3H0UI37 97 aa7.72□□□□□ -1.17
VPS28-202ENST00000377348 CEND1Q8N111 149 aa7.72□□□□□ -1.17
VPS28-202ENST00000377348 DEFB105AQ8NG35 78 aa7.72□□□□□ -1.17
VPS28-202ENST00000377348 H7C2G1 150 aa7.71□□□□□ -1.18
VPS28-202ENST00000377348 PRR4Q16378 134 aa7.71□□□□□ -1.18
VPS28-202ENST00000377348 TAL2Q16559 108 aa7.71□□□□□ -1.18
VPS28-202ENST00000377348 SPRR1BP22528 89 aa7.7□□□□□ -1.18
VPS28-202ENST00000377348 FXYD2P54710 66 aa7.7□□□□□ -1.18
VPS28-202ENST00000377348 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
VPS28-202ENST00000377348 RAB37Q96AX2 223 aa7.7□□□□□ -1.18
VPS28-202ENST00000377348 RETNLBQ9BQ08 111 aa7.7□□□□□ -1.18
VPS28-202ENST00000377348 VAMP3Q15836 100 aa7.69□□□□□ -1.18
VPS28-202ENST00000377348 A0A0B4J2C4 111 aa7.68□□□□□ -1.18
VPS28-202ENST00000377348 LINC01547P58512 204 aaPredicted RBP7.68□□□□□ -1.18
VPS28-202ENST00000377348 C4orf48Q5BLP8 95 aa7.68□□□□□ -1.18
VPS28-202ENST00000377348 LINC00575Q6W349 94 aa7.68□□□□□ -1.18
VPS28-202ENST00000377348 SSBP3-AS1Q7Z2R9 100 aa7.68□□□□□ -1.18
VPS28-202ENST00000377348 Q1RN00 199 aa7.67□□□□□ -1.18
VPS28-202ENST00000377348 SPAG11AQ6PDA7 123 aa7.67□□□□□ -1.18
VPS28-202ENST00000377348 NHP2Q9NX24 153 aaKnown RBP7.67□□□□□ -1.18
VPS28-202ENST00000377348 IGLV5-48A0A075B6I7 105 aa7.66□□□□□ -1.18
VPS28-202ENST00000377348 TEX49A0A1B0GTD5 131 aa7.66□□□□□ -1.18
VPS28-202ENST00000377348 SLC25A20O43772 301 aa7.66□□□□□ -1.18
VPS28-202ENST00000377348 HSD52Q0P140 79 aa7.66□□□□□ -1.18
VPS28-202ENST00000377348 LAMTOR3Q9UHA4 124 aa7.66□□□□□ -1.18
VPS28-202ENST00000377348 TMEM238LA0A1B0GVL6 79 aa7.65□□□□□ -1.18
VPS28-202ENST00000377348 hADV29S1A0JD25 119 aa7.65□□□□□ -1.18
VPS28-202ENST00000377348 A6NJY4 79 aa7.65□□□□□ -1.18
VPS28-202ENST00000377348 CTAG1AP78358 180 aa7.65□□□□□ -1.18
VPS28-202ENST00000377348 SMIM29Q86T20 159 aa7.65□□□□□ -1.18
VPS28-202ENST00000377348 BVES-AS1Q5T3Y7 98 aa7.64□□□□□ -1.19
VPS28-202ENST00000377348 Q8N377 158 aa7.64□□□□□ -1.19
VPS28-202ENST00000377348 SPINK1P00995 79 aa7.63□□□□□ -1.19
VPS28-202ENST00000377348 Q6ZQY7 126 aa7.63□□□□□ -1.19
VPS28-202ENST00000377348 PRO1854Q9UHT4 67 aa7.63□□□□□ -1.19
VPS28-202ENST00000377348 PCP4L1A6NKN8 68 aa7.62□□□□□ -1.19
VPS28-202ENST00000377348 K7ERJ3 54 aa7.62□□□□□ -1.19
VPS28-202ENST00000377348 HRCT1Q6UXD1 115 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms