RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 SMCPP49901 116 aaPredicted RBP6.44□□□□□ -1.38
COL4A6-202ENST00000372216 C8orf87E5RJ46 101 aa6.43□□□□□ -1.38
COL4A6-202ENST00000372216 PRR34Q9NV39 138 aa6.43□□□□□ -1.38
COL4A6-202ENST00000372216 LINC00612Q8N6U2 182 aa6.43□□□□□ -1.38
COL4A6-202ENST00000372216 USP9XQ93008 2570 aaPredicted RBP6.43□□□□□ -1.38
COL4A6-202ENST00000372216 TLN2Q9Y4G6 2542 aa6.42□□□□□ -1.38
COL4A6-202ENST00000372216 A8MWP4 228 aa6.42□□□□□ -1.38
COL4A6-202ENST00000372216 KCNQ1DNQ9H478 68 aa6.42□□□□□ -1.38
COL4A6-202ENST00000372216 COA5Q86WW8 74 aa6.41□□□□□ -1.38
COL4A6-202ENST00000372216 LINC00336Q6ZUF6 198 aa6.41□□□□□ -1.38
COL4A6-202ENST00000372216 UTRNP46939 3433 aa6.4□□□□□ -1.39
COL4A6-202ENST00000372216 IGLV5-48A0A075B6I7 105 aa6.4□□□□□ -1.39
COL4A6-202ENST00000372216 IGFL1Q6UW32 110 aa6.39□□□□□ -1.39
COL4A6-202ENST00000372216 ZNF861PO60384 105 aa6.39□□□□□ -1.39
COL4A6-202ENST00000372216 CASC10Q5T4H9 136 aa6.39□□□□□ -1.39
COL4A6-202ENST00000372216 PKD1L2Q7Z442 2459 aa6.38□□□□□ -1.39
COL4A6-202ENST00000372216 PRO0461Q9UI25 63 aa6.38□□□□□ -1.39
COL4A6-202ENST00000372216 DOPEY1Q5JWR5 2465 aa6.38□□□□□ -1.39
COL4A6-202ENST00000372216 LOC101927531A0A1B0GV80 90 aa6.37□□□□□ -1.39
COL4A6-202ENST00000372216 Q6ZSA8 131 aa6.37□□□□□ -1.39
COL4A6-202ENST00000372216 DNAH12Q6ZR08 3092 aa6.37□□□□□ -1.39
COL4A6-202ENST00000372216 C9orf163Q8N9P6 203 aa6.37□□□□□ -1.39
COL4A6-202ENST00000372216 RPS28P62857 69 aaKnown RBP6.36□□□□□ -1.39
COL4A6-202ENST00000372216 C8orf17Q9NRJ1 99 aa6.36□□□□□ -1.39
COL4A6-202ENST00000372216 TLX1NBP0CAT3 122 aa6.36□□□□□ -1.39
COL4A6-202ENST00000372216 IGLV7-43P04211 117 aa6.35□□□□□ -1.39
COL4A6-202ENST00000372216 PSORS1C2Q9UIG4 136 aa6.35□□□□□ -1.39
COL4A6-202ENST00000372216 H3BPC8 53 aa6.35□□□□□ -1.39
COL4A6-202ENST00000372216 POLQO75417 2590 aa6.35□□□□□ -1.39
COL4A6-202ENST00000372216 MIR22HGQ0VDD5 57 aa6.35□□□□□ -1.39
COL4A6-202ENST00000372216 PLA2G2DQ9UNK4 145 aa6.34□□□□□ -1.39
COL4A6-202ENST00000372216 A8MUN3 132 aa6.34□□□□□ -1.39
COL4A6-202ENST00000372216 USP9YO00507 2555 aaPredicted RBP6.34□□□□□ -1.4
COL4A6-202ENST00000372216 A0A1B0GVX0 72 aa6.32□□□□□ -1.4
COL4A6-202ENST00000372216 EIF4EBP3O60516 100 aaPredicted RBP6.32□□□□□ -1.4
COL4A6-202ENST00000372216 CNBPP62633 177 aaKnown RBP6.32□□□□□ -1.4
COL4A6-202ENST00000372216 TNP2Q05952 138 aa6.31□□□□□ -1.4
COL4A6-202ENST00000372216 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
COL4A6-202ENST00000372216 UQCR11O14957 56 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 Q8N377 158 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 PRR15Q8IV56 129 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 PRR26Q8N8Z3 221 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 FASNP49327 2511 aaKnown RBP6.3□□□□□ -1.4
COL4A6-202ENST00000372216 IGLV7-46A0A075B6I9 117 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 ACANP16112 2415 aa6.3□□□□□ -1.4
COL4A6-202ENST00000372216 SETD2Q9BYW2 2564 aaPredicted RBP6.29□□□□□ -1.4
COL4A6-202ENST00000372216 F8P00451 2351 aa6.28□□□□□ -1.4
COL4A6-202ENST00000372216 MTORP42345 2549 aa6.28□□□□□ -1.4
COL4A6-202ENST00000372216 CD164Q04900 197 aa6.28□□□□□ -1.4
COL4A6-202ENST00000372216 SPRR4Q96PI1 79 aa6.27□□□□□ -1.41
COL4A6-202ENST00000372216 ERC2-IT1O76042 136 aa6.26□□□□□ -1.41
COL4A6-202ENST00000372216 CDC42SE1Q9NRR8 79 aa6.24□□□□□ -1.41
COL4A6-202ENST00000372216 FAM104AQ969W3 186 aa6.21□□□□□ -1.42
COL4A6-202ENST00000372216 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.18□□□□□ -1.42
COL4A6-202ENST00000372216 WIPF1O43516 503 aa6.18□□□□□ -1.42
COL4A6-202ENST00000372216 CR1P17927 2039 aa6.18□□□□□ -1.42
COL4A6-202ENST00000372216 KTN1-AS1Q86SY8 53 aa6.18□□□□□ -1.42
COL4A6-202ENST00000372216 Q5VSD8 79 aa6.18□□□□□ -1.42
COL4A6-202ENST00000372216 LINC00483Q53H64 154 aa6.17□□□□□ -1.42
COL4A6-202ENST00000372216 LUZP6Q538Z0 58 aa6.17□□□□□ -1.42
COL4A6-202ENST00000372216 C5orf42Q9H799 3197 aa6.17□□□□□ -1.42
COL4A6-202ENST00000372216 EPG5Q9HCE0 2579 aa6.17□□□□□ -1.42
COL4A6-202ENST00000372216 LCA10Q71F78 164 aa6.15□□□□□ -1.42
COL4A6-202ENST00000372216 A0A1W2PNM2 257 aa6.15□□□□□ -1.43
COL4A6-202ENST00000372216 S4R3F8 94 aa6.15□□□□□ -1.43
COL4A6-202ENST00000372216 HECTD1Q9ULT8 2610 aa6.15□□□□□ -1.43
COL4A6-202ENST00000372216 H3BS24 57 aa6.13□□□□□ -1.43
COL4A6-202ENST00000372216 CHD7Q9P2D1 2997 aa6.12□□□□□ -1.43
COL4A6-202ENST00000372216 CYP4F30PQ9H0H9 118 aa6.12□□□□□ -1.43
COL4A6-202ENST00000372216 CEP350Q5VT06 3117 aa6.1□□□□□ -1.43
COL4A6-202ENST00000372216 PLAC8Q9NZF1 115 aa6.08□□□□□ -1.44
COL4A6-202ENST00000372216 FAM229BQ4G0N7 80 aa6.05□□□□□ -1.44
COL4A6-202ENST00000372216 HRES1P13985 223 aa6.04□□□□□ -1.44
COL4A6-202ENST00000372216 A0A1B0GU33 70 aa6.03□□□□□ -1.44
COL4A6-202ENST00000372216 KLKP1Q107X0 134 aa6.03□□□□□ -1.44
COL4A6-202ENST00000372216 HTTP42858 3142 aa6.03□□□□□ -1.44
COL4A6-202ENST00000372216 CHD9Q3L8U1 2897 aa6.02□□□□□ -1.45
COL4A6-202ENST00000372216 LCE6AA0A183 80 aa6.02□□□□□ -1.45
COL4A6-202ENST00000372216 CSAG1Q6PB30 78 aa6.02□□□□□ -1.45
COL4A6-202ENST00000372216 R4GN34 69 aa6.02□□□□□ -1.45
COL4A6-202ENST00000372216 Q1T7F1 81 aa6.01□□□□□ -1.45
COL4A6-202ENST00000372216 KRTAP1-5Q9BYS1 174 aa6.01□□□□□ -1.45
COL4A6-202ENST00000372216 FLNAP21333 2647 aaKnown RBP6.01□□□□□ -1.45
COL4A6-202ENST00000372216 FLNBO75369 2602 aaKnown RBP5.99□□□□□ -1.45
COL4A6-202ENST00000372216 ITPR3Q14573 2671 aa5.98□□□□□ -1.45
COL4A6-202ENST00000372216 Q8NDZ9 215 aa5.98□□□□□ -1.45
COL4A6-202ENST00000372216 ZCCHC13Q8WW36 166 aaKnown RBP5.98□□□□□ -1.45
COL4A6-202ENST00000372216 H7BZZ5 65 aa5.97□□□□□ -1.45
COL4A6-202ENST00000372216 PRRC2CQ9Y520 2896 aaKnown RBP5.97□□□□□ -1.45
COL4A6-202ENST00000372216 Q8N9P0 234 aaPredicted RBP5.97□□□□□ -1.45
COL4A6-202ENST00000372216 KRTAP10-1P60331 282 aa5.97□□□□□ -1.45
COL4A6-202ENST00000372216 PLAC4Q8WY50 150 aa5.96□□□□□ -1.45
COL4A6-202ENST00000372216 KRTAP10-2P60368 255 aa5.96□□□□□ -1.45
COL4A6-202ENST00000372216 SEC61BP60468 96 aaKnown RBP5.96□□□□□ -1.45
COL4A6-202ENST00000372216 SPANXA2-OT1Q8N9U9 137 aa5.96□□□□□ -1.46
COL4A6-202ENST00000372216 HELZ2Q9BYK8 2649 aaKnown RBP5.95□□□□□ -1.46
COL4A6-202ENST00000372216 BPTFQ12830 3046 aa5.95□□□□□ -1.46
COL4A6-202ENST00000372216 M0QZ58 72 aa5.94□□□□□ -1.46
COL4A6-202ENST00000372216 SPRR1AP35321 89 aa5.94□□□□□ -1.46
COL4A6-202ENST00000372216 PCNTO95613 3336 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms