RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 M0QXV9 152 aa12.57□□□□□ -0.4
CLN3-205ENST00000359984 LINC01600Q96MT4 127 aa12.57□□□□□ -0.4
CLN3-205ENST00000359984 TMEM126AQ9H061 195 aa12.57□□□□□ -0.4
CLN3-205ENST00000359984 IGLV6-57P01721 117 aa12.56□□□□□ -0.4
CLN3-205ENST00000359984 A0A087WYN8 130 aa12.55□□□□□ -0.4
CLN3-205ENST00000359984 TRBV10-3A0A0K0K1G6 114 aa12.55□□□□□ -0.4
CLN3-205ENST00000359984 LST1O00453 97 aa12.55□□□□□ -0.4
CLN3-205ENST00000359984 MRPL55Q7Z7F7 128 aaKnown RBP12.55□□□□□ -0.4
CLN3-205ENST00000359984 LINC00167Q96N53 147 aa12.55□□□□□ -0.4
CLN3-205ENST00000359984 FAM30AQ9NZY2 134 aa12.55□□□□□ -0.4
CLN3-205ENST00000359984 C9JAW5 83 aa12.54□□□□□ -0.4
CLN3-205ENST00000359984 EPM2AB3EWF7 344 aa12.53□□□□□ -0.4
CLN3-205ENST00000359984 SLC25A20O43772 301 aa12.53□□□□□ -0.4
CLN3-205ENST00000359984 CLEC2BQ92478 149 aa12.53□□□□□ -0.4
CLN3-205ENST00000359984 SMIM11BQ8TCY0 68 aa12.53□□□□□ -0.4
CLN3-205ENST00000359984 Q6ZSA8 131 aa12.52□□□□□ -0.41
CLN3-205ENST00000359984 RPL37AP8A6NKH3 93 aa12.51□□□□□ -0.41
CLN3-205ENST00000359984 RPL28P46779 137 aaKnown RBP12.51□□□□□ -0.41
CLN3-205ENST00000359984 PHF5AQ7RTV0 110 aaKnown RBP12.51□□□□□ -0.41
CLN3-205ENST00000359984 TEN1Q86WV5 123 aa12.51□□□□□ -0.41
CLN3-205ENST00000359984 PLAC8Q9NZF1 115 aa12.51□□□□□ -0.41
CLN3-205ENST00000359984 IGLV1-50A0A075B6I6 118 aa12.49□□□□□ -0.41
CLN3-205ENST00000359984 DNAH8Q96JB1 4490 aa12.49□□□□□ -0.41
CLN3-205ENST00000359984 PKHD1P08F94 4074 aa12.48□□□□□ -0.41
CLN3-205ENST00000359984 ANKRD29Q8N6D5 301 aa12.48□□□□□ -0.41
CLN3-205ENST00000359984 TRAV23DV6A0A075B6W5 121 aa12.47□□□□□ -0.41
CLN3-205ENST00000359984 KCNQ1DNQ9H478 68 aa12.46□□□□□ -0.41
CLN3-205ENST00000359984 J3QR89 54 aa12.46□□□□□ -0.42
CLN3-205ENST00000359984 CIRBP-AS1Q8TBR5 109 aa12.45□□□□□ -0.42
CLN3-205ENST00000359984 PPDPFLQ8WWR9 84 aa12.45□□□□□ -0.42
CLN3-205ENST00000359984 H3BT86 120 aa12.44□□□□□ -0.42
CLN3-205ENST00000359984 KRTAP11-1Q8IUC1 163 aa12.44□□□□□ -0.42
CLN3-205ENST00000359984 C6orf99Q4VX62 202 aa12.44□□□□□ -0.42
CLN3-205ENST00000359984 ZNF73O43830 326 aaPredicted RBP12.43□□□□□ -0.42
CLN3-205ENST00000359984 UBE2BP63146 152 aa12.43□□□□□ -0.42
CLN3-205ENST00000359984 SCXQ7RTU7 201 aa12.43□□□□□ -0.42
CLN3-205ENST00000359984 FAM218AQ96MZ4 157 aa12.43□□□□□ -0.42
CLN3-205ENST00000359984 DYNC1H1Q14204 4646 aaKnown RBP12.42□□□□□ -0.42
CLN3-205ENST00000359984 LRP1BQ9NZR2 4599 aa12.42□□□□□ -0.42
CLN3-205ENST00000359984 PRYO14603 147 aa12.42□□□□□ -0.42
CLN3-205ENST00000359984 TRACP01848 142 aa12.42□□□□□ -0.42
CLN3-205ENST00000359984 HAMPP81172 84 aa12.42□□□□□ -0.42
CLN3-205ENST00000359984 DIRC1Q969H9 104 aa12.41□□□□□ -0.42
CLN3-205ENST00000359984 SPRR1AP35321 89 aa12.38□□□□□ -0.43
CLN3-205ENST00000359984 REG3GQ6UW15 175 aa12.38□□□□□ -0.43
CLN3-205ENST00000359984 KRTAP4-16G5E9R7 235 aaPredicted RBP12.36□□□□□ -0.43
CLN3-205ENST00000359984 H0YGX0 51 aa12.36□□□□□ -0.43
CLN3-205ENST00000359984 SIGMAR1Q99720 223 aa12.36□□□□□ -0.43
CLN3-205ENST00000359984 TRBV7-6A0A0J9YX20 115 aa12.34□□□□□ -0.43
CLN3-205ENST00000359984 TEX49A0A1B0GTD5 131 aa12.34□□□□□ -0.43
CLN3-205ENST00000359984 COX7BP24311 80 aa12.34□□□□□ -0.43
CLN3-205ENST00000359984 ELOF1P60002 83 aaKnown RBP12.33□□□□□ -0.44
CLN3-205ENST00000359984 ETDCA0A1B0GVM5 59 aa12.32□□□□□ -0.44
CLN3-205ENST00000359984 XGP55808 180 aa12.32□□□□□ -0.44
CLN3-205ENST00000359984 B5MCH6 92 aa12.31□□□□□ -0.44
CLN3-205ENST00000359984 PSORS1C2Q9UIG4 136 aa12.31□□□□□ -0.44
CLN3-205ENST00000359984 LINC00528Q8N1L1 170 aa12.3□□□□□ -0.44
CLN3-205ENST00000359984 LINC00575Q6W349 94 aa12.29□□□□□ -0.44
CLN3-205ENST00000359984 CDIP1Q9H305 208 aa12.29□□□□□ -0.44
CLN3-205ENST00000359984 BAALC-AS2P0C853 105 aa12.29□□□□□ -0.44
CLN3-205ENST00000359984 Q6ZRX8 168 aa12.29□□□□□ -0.44
CLN3-205ENST00000359984 FAM19A1Q7Z5A9 133 aa12.29□□□□□ -0.44
CLN3-205ENST00000359984 BCE1O60756 84 aa12.28□□□□□ -0.44
CLN3-205ENST00000359984 APOBP04114 4563 aaKnown RBP12.25□□□□□ -0.45
CLN3-205ENST00000359984 PRLHP81277 87 aa12.25□□□□□ -0.45
CLN3-205ENST00000359984 Q9BRP9 147 aa12.25□□□□□ -0.45
CLN3-205ENST00000359984 A0A1B0GX51 115 aa12.25□□□□□ -0.45
CLN3-205ENST00000359984 C1orf137Q5JT78 98 aa12.25□□□□□ -0.45
CLN3-205ENST00000359984 hADV29S1A0JD25 119 aa12.23□□□□□ -0.45
CLN3-205ENST00000359984 DNAL4O96015 105 aa12.23□□□□□ -0.45
CLN3-205ENST00000359984 INAFM2P0DMQ5 153 aa12.23□□□□□ -0.45
CLN3-205ENST00000359984 H0Y9J4 135 aa12.22□□□□□ -0.45
CLN3-205ENST00000359984 UBE2AP49459 152 aa12.22□□□□□ -0.45
CLN3-205ENST00000359984 KRTAP13-1Q8IUC0 172 aa12.22□□□□□ -0.45
CLN3-205ENST00000359984 DHRS4-AS1Q9P1J3 65 aa12.21□□□□□ -0.45
CLN3-205ENST00000359984 SMCR5Q8TEV8 140 aa12.21□□□□□ -0.46
CLN3-205ENST00000359984 SNCGO76070 127 aa12.2□□□□□ -0.46
CLN3-205ENST00000359984 ERC2-IT1O76042 136 aa12.19□□□□□ -0.46
CLN3-205ENST00000359984 SMR3BP02814 79 aaPredicted RBP12.19□□□□□ -0.46
CLN3-205ENST00000359984 HIGD2AQ9BW72 106 aa12.18□□□□□ -0.46
CLN3-205ENST00000359984 EPPK1P58107 5090 aaKnown RBP12.18□□□□□ -0.46
CLN3-205ENST00000359984 IGLV7-43P04211 117 aa12.17□□□□□ -0.46
CLN3-205ENST00000359984 FAM240AA0A1B0GVK7 77 aa12.16□□□□□ -0.46
CLN3-205ENST00000359984 Q6ZQY7 126 aa12.16□□□□□ -0.46
CLN3-205ENST00000359984 CDK2AP2O75956 126 aa12.15□□□□□ -0.46
CLN3-205ENST00000359984 OBSCN-AS1Q96MR7 158 aa12.15□□□□□ -0.46
CLN3-205ENST00000359984 ORMDL1Q9P0S3 153 aa12.15□□□□□ -0.46
CLN3-205ENST00000359984 ZNF861PO60384 105 aa12.14□□□□□ -0.47
CLN3-205ENST00000359984 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.14□□□□□ -0.47
CLN3-205ENST00000359984 ST20-AS1Q8NBB2 130 aa12.12□□□□□ -0.47
CLN3-205ENST00000359984 SRRM2Q9UQ35 2752 aaKnown RBP12.12□□□□□ -0.47
CLN3-205ENST00000359984 MT-ATP8P03928 68 aa12.11□□□□□ -0.47
CLN3-205ENST00000359984 RPL37AP61513 92 aaKnown RBP12.11□□□□□ -0.47
CLN3-205ENST00000359984 VPS13BQ7Z7G8 4022 aa12.09□□□□□ -0.47
CLN3-205ENST00000359984 LINC01547P58512 204 aaPredicted RBP12.08□□□□□ -0.48
CLN3-205ENST00000359984 DEFB105AQ8NG35 78 aa12.08□□□□□ -0.48
CLN3-205ENST00000359984 TMEM256-PLSCR3K7ERE1 68 aa12.07□□□□□ -0.48
CLN3-205ENST00000359984 ACYP1P07311 99 aa12.07□□□□□ -0.48
CLN3-205ENST00000359984 FAT1Q14517 4588 aa12.06□□□□□ -0.48
CLN3-205ENST00000359984 IGLV5-48A0A075B6I7 105 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms