RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 PMCHL2Q9BQD1 86 aa8.04□□□□□ -1.12
PRPF40A-201ENST00000354363 TRAV23DV6A0A075B6W5 121 aa8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 SOSTDC1Q6X4U4 206 aa8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 HSPB8Q9UJY1 196 aa8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 IGKCP01834 107 aa8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 FABP4P15090 132 aa8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 LINC01547P58512 204 aaPredicted RBP8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 JOSD1Q15040 202 aaPredicted RBP8.03□□□□□ -1.12
PRPF40A-201ENST00000354363 EIF4EBP3O60516 100 aaPredicted RBP8.02□□□□□ -1.13
PRPF40A-201ENST00000354363 NPC2P61916 151 aa8.02□□□□□ -1.13
PRPF40A-201ENST00000354363 C9orf153Q5TBE3 101 aa8.02□□□□□ -1.13
PRPF40A-201ENST00000354363 ZNF73O43830 326 aaPredicted RBP8.01□□□□□ -1.13
PRPF40A-201ENST00000354363 ADAMTSL4-AS1Q5T5F5 129 aa8.01□□□□□ -1.13
PRPF40A-201ENST00000354363 XP32Q5T750 250 aa8.01□□□□□ -1.13
PRPF40A-201ENST00000354363 ST20-AS1Q8NBB2 130 aa8.01□□□□□ -1.13
PRPF40A-201ENST00000354363 A0A0J9YXY3 114 aa8□□□□□ -1.13
PRPF40A-201ENST00000354363 LCE2BO14633 110 aa7.99□□□□□ -1.13
PRPF40A-201ENST00000354363 C5orf52A6NGY3 159 aa7.97□□□□□ -1.13
PRPF40A-201ENST00000354363 E9PLD3 99 aa7.96□□□□□ -1.13
PRPF40A-201ENST00000354363 CBY1Q9Y3M2 126 aa7.96□□□□□ -1.14
PRPF40A-201ENST00000354363 HINT1P49773 126 aaPredicted RBP7.95□□□□□ -1.14
PRPF40A-201ENST00000354363 SPRR1BP22528 89 aa7.94□□□□□ -1.14
PRPF40A-201ENST00000354363 LITAFQ99732 161 aa7.94□□□□□ -1.14
PRPF40A-201ENST00000354363 LINC00308Q8TCZ7 52 aa7.93□□□□□ -1.14
PRPF40A-201ENST00000354363 SPANXCQ9NY87 97 aa7.93□□□□□ -1.14
PRPF40A-201ENST00000354363 OR13C6PQ8NH95 151 aa7.92□□□□□ -1.14
PRPF40A-201ENST00000354363 COLCA2A8K830 154 aa7.92□□□□□ -1.14
PRPF40A-201ENST00000354363 HRCT1Q6UXD1 115 aa7.92□□□□□ -1.14
PRPF40A-201ENST00000354363 LCE2CQ5TA81 110 aa7.91□□□□□ -1.14
PRPF40A-201ENST00000354363 SLC25A34Q6PIV7 304 aa7.91□□□□□ -1.14
PRPF40A-201ENST00000354363 LIMD2Q9BT23 127 aa7.91□□□□□ -1.14
PRPF40A-201ENST00000354363 DHRS4-AS1Q9P1J3 65 aa7.91□□□□□ -1.14
PRPF40A-201ENST00000354363 TIMM17BO60830 172 aa7.9□□□□□ -1.14
PRPF40A-201ENST00000354363 SYS1-DBNDD2H3BUS1 97 aa7.89□□□□□ -1.15
PRPF40A-201ENST00000354363 LAMTOR3Q9UHA4 124 aa7.89□□□□□ -1.15
PRPF40A-201ENST00000354363 SPANXDQ9BXN6 97 aa7.89□□□□□ -1.15
PRPF40A-201ENST00000354363 ELOF1P60002 83 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-201ENST00000354363 KRTAP19-2Q3LHN2 52 aa7.88□□□□□ -1.15
PRPF40A-201ENST00000354363 C9orf92A6NGG3 77 aa7.87□□□□□ -1.15
PRPF40A-201ENST00000354363 COX7BP24311 80 aa7.87□□□□□ -1.15
PRPF40A-201ENST00000354363 PCOTHQ58A44 107 aa7.87□□□□□ -1.15
PRPF40A-201ENST00000354363 LINC01545Q5VT33 79 aa7.87□□□□□ -1.15
PRPF40A-201ENST00000354363 ZNF815PA8K554 130 aa7.86□□□□□ -1.15
PRPF40A-201ENST00000354363 C6orf99Q4VX62 202 aa7.86□□□□□ -1.15
PRPF40A-201ENST00000354363 TTTY13Q9BZ97 58 aa7.85□□□□□ -1.15
PRPF40A-201ENST00000354363 SLC7A5P1Q8MH63 180 aa7.85□□□□□ -1.15
PRPF40A-201ENST00000354363 LINC00518Q8N0U6 118 aa7.85□□□□□ -1.15
PRPF40A-201ENST00000354363 IGLV8-61A0A075B6I0 122 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 CD164Q04900 197 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 TAL2Q16559 108 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 Q1RN00 199 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 PET117Q6UWS5 81 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 DEFB105AQ8NG35 78 aa7.84□□□□□ -1.15
PRPF40A-201ENST00000354363 HIST1H2BKO60814 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BJP06899 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BOP23527 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BBP33778 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BDP58876 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BCP62807 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST2H2BEQ16778 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BHQ93079 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BNQ99877 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 HIST1H2BMQ99879 126 aa7.83□□□□□ -1.16
PRPF40A-201ENST00000354363 MT1HP80294 61 aa7.82□□□□□ -1.16
PRPF40A-201ENST00000354363 PRO1933Q9H354 126 aa7.82□□□□□ -1.16
PRPF40A-201ENST00000354363 TEX49A0A1B0GTD5 131 aa7.81□□□□□ -1.16
PRPF40A-201ENST00000354363 TRBV7-6A0A0J9YX20 115 aa7.81□□□□□ -1.16
PRPF40A-201ENST00000354363 H7C2G1 150 aa7.8□□□□□ -1.16
PRPF40A-201ENST00000354363 SMIM29Q86T20 159 aa7.8□□□□□ -1.16
PRPF40A-201ENST00000354363 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
PRPF40A-201ENST00000354363 C3orf79P0CE67 100 aa7.79□□□□□ -1.16
PRPF40A-201ENST00000354363 Q5XG85 94 aa7.79□□□□□ -1.16
PRPF40A-201ENST00000354363 AKR1D1P51857 326 aa7.78□□□□□ -1.16
PRPF40A-201ENST00000354363 A0A1B0GWB2 263 aa7.78□□□□□ -1.16
PRPF40A-201ENST00000354363 C1orf195Q5TG92 126 aa7.78□□□□□ -1.16
PRPF40A-201ENST00000354363 IGLV5-48A0A075B6I7 105 aa7.77□□□□□ -1.17
PRPF40A-201ENST00000354363 A0A0G2JQZ4 141 aa7.77□□□□□ -1.17
PRPF40A-201ENST00000354363 SCGB1D4Q6XE38 83 aa7.77□□□□□ -1.17
PRPF40A-201ENST00000354363 CFC1BP0CG36 223 aa7.75□□□□□ -1.17
PRPF40A-201ENST00000354363 IFITM1P13164 125 aa7.75□□□□□ -1.17
PRPF40A-201ENST00000354363 A6NDN8 102 aa7.74□□□□□ -1.17
PRPF40A-201ENST00000354363 KRTDAPP60985 99 aa7.74□□□□□ -1.17
PRPF40A-201ENST00000354363 ANKRD39Q53RE8 183 aa7.74□□□□□ -1.17
PRPF40A-201ENST00000354363 COPS9Q8WXC6 57 aa7.74□□□□□ -1.17
PRPF40A-201ENST00000354363 FSIP2Q5CZC0 6907 aa7.73□□□□□ -1.17
PRPF40A-201ENST00000354363 RPL37P61927 97 aaKnown RBP7.72□□□□□ -1.17
PRPF40A-201ENST00000354363 Q6ZVH6 145 aa7.72□□□□□ -1.17
PRPF40A-201ENST00000354363 MUSTN1Q8IVN3 82 aa7.72□□□□□ -1.17
PRPF40A-201ENST00000354363 A4D1N5 150 aa7.71□□□□□ -1.17
PRPF40A-201ENST00000354363 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.17
PRPF40A-201ENST00000354363 COA6Q5JTJ3 125 aaKnown RBP7.71□□□□□ -1.17
PRPF40A-201ENST00000354363 KRTAP10-6P60371 365 aaPredicted RBP7.7□□□□□ -1.18
PRPF40A-201ENST00000354363 FLGP20930 4061 aaPredicted RBP7.7□□□□□ -1.18
PRPF40A-201ENST00000354363 C20orf202A1L168 122 aa7.7□□□□□ -1.18
PRPF40A-201ENST00000354363 PCP2Q8IVA1 136 aa7.7□□□□□ -1.18
PRPF40A-201ENST00000354363 ATOH7Q8N100 152 aa7.7□□□□□ -1.18
PRPF40A-201ENST00000354363 SMIM11BQ8TCY0 68 aa7.69□□□□□ -1.18
PRPF40A-201ENST00000354363 NHP2Q9NX24 153 aaKnown RBP7.69□□□□□ -1.18
PRPF40A-201ENST00000354363 TRAV13-2A0A0B4J235 113 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms