RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 DNAH5Q8TE73 4624 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 SOSTDC1Q6X4U4 206 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 FAM30AQ9NZY2 134 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 PKIGQ9Y2B9 76 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 NDUFC2-KCTD14E9PQ53 114 aa5.92□□□□□ -1.46
USP4-202ENST00000351842 SMR3BP02814 79 aaPredicted RBP5.92□□□□□ -1.46
USP4-202ENST00000351842 C2orf48Q96LS8 159 aa5.92□□□□□ -1.46
USP4-202ENST00000351842 KRTAP10-1P60331 282 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 C9orf163Q8N9P6 203 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 Q8NDZ9 215 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 SERTAD4-AS1Q5TG53 156 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 Q5XG85 94 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 LINC00308Q8TCZ7 52 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 PRO0628Q9UI54 55 aa5.91□□□□□ -1.46
USP4-202ENST00000351842 LRP1BQ9NZR2 4599 aa5.9□□□□□ -1.46
USP4-202ENST00000351842 ATXN8Q156A1 80 aa5.9□□□□□ -1.46
USP4-202ENST00000351842 C9orf129Q5T035 196 aaKnown RBP5.9□□□□□ -1.46
USP4-202ENST00000351842 PKD1P98161 4303 aa5.9□□□□□ -1.46
USP4-202ENST00000351842 Q1RN00 199 aa5.9□□□□□ -1.47
USP4-202ENST00000351842 NKAPP1Q8N9T2 125 aa5.9□□□□□ -1.47
USP4-202ENST00000351842 TRBV10-2A0A0K0K1G8 114 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 TEX49A0A1B0GTD5 131 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 V9GYY9 64 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 DYNC1H1Q14204 4646 aaKnown RBP5.89□□□□□ -1.47
USP4-202ENST00000351842 A0A087WYN8 130 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 A0A1W2PNN7 141 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 TRIAP1O43715 76 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 UBE2BP63146 152 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 SDIM1Q6ZPB5 146 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 TRBV7-7A0A0K0K1E9 115 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 OXTP01178 125 aa5.89□□□□□ -1.47
USP4-202ENST00000351842 PHF5AQ7RTV0 110 aaKnown RBP5.89□□□□□ -1.47
USP4-202ENST00000351842 S100A7L2Q5SY68 101 aa5.88□□□□□ -1.47
USP4-202ENST00000351842 LINC01561Q8N1V8 128 aa5.88□□□□□ -1.47
USP4-202ENST00000351842 KIAA1109Q2LD37 5005 aa5.88□□□□□ -1.47
USP4-202ENST00000351842 H3BT86 120 aa5.88□□□□□ -1.47
USP4-202ENST00000351842 CNBPP62633 177 aaKnown RBP5.88□□□□□ -1.47
USP4-202ENST00000351842 LINC00336Q6ZUF6 198 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 DSCR8Q96T75 97 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 FAT1Q14517 4588 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 hADV29S1A0JD25 119 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 LST1O00453 97 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 TRACP01848 142 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 COX7CP15954 63 aa5.87□□□□□ -1.47
USP4-202ENST00000351842 FAM240AA0A1B0GVK7 77 aa5.86□□□□□ -1.47
USP4-202ENST00000351842 CRYGAP11844 174 aa5.86□□□□□ -1.47
USP4-202ENST00000351842 SCXQ7RTU7 201 aa5.86□□□□□ -1.47
USP4-202ENST00000351842 CIRBP-AS1Q8TBR5 109 aa5.85□□□□□ -1.47
USP4-202ENST00000351842 COPS9Q8WXC6 57 aa5.85□□□□□ -1.47
USP4-202ENST00000351842 C22orf24Q9Y442 160 aa5.85□□□□□ -1.47
USP4-202ENST00000351842 TMEM258P61165 79 aa5.84□□□□□ -1.47
USP4-202ENST00000351842 COX17Q14061 63 aa5.84□□□□□ -1.47
USP4-202ENST00000351842 IMUPQ9GZP8 106 aa5.84□□□□□ -1.47
USP4-202ENST00000351842 CYSTM1Q9H1C7 97 aa5.84□□□□□ -1.47
USP4-202ENST00000351842 TRBV10-3A0A0K0K1G6 114 aa5.84□□□□□ -1.48
USP4-202ENST00000351842 FAM236DA0A1B0GTK5 79 aa5.84□□□□□ -1.48
USP4-202ENST00000351842 FAM236CP0DP71 79 aa5.84□□□□□ -1.48
USP4-202ENST00000351842 LINC00337Q8N6G1 96 aa5.84□□□□□ -1.48
USP4-202ENST00000351842 COX6CP09669 75 aa5.83□□□□□ -1.48
USP4-202ENST00000351842 KRTAP7-1Q8IUC3 87 aa5.82□□□□□ -1.48
USP4-202ENST00000351842 C7orf33Q8WU49 177 aa5.82□□□□□ -1.48
USP4-202ENST00000351842 LINC00167Q96N53 147 aa5.82□□□□□ -1.48
USP4-202ENST00000351842 VPREB1P12018 145 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 MRPL55Q7Z7F7 128 aaKnown RBP5.81□□□□□ -1.48
USP4-202ENST00000351842 KRTAP11-1Q8IUC1 163 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 A0A1B0GVY2 172 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 C1orf195Q5TG92 126 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 SPACA4Q8TDM5 124 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 DNAH8Q96JB1 4490 aa5.81□□□□□ -1.48
USP4-202ENST00000351842 PRLHP81277 87 aa5.8□□□□□ -1.48
USP4-202ENST00000351842 C6orf99Q4VX62 202 aa5.79□□□□□ -1.48
USP4-202ENST00000351842 CLEC2BQ92478 149 aa5.79□□□□□ -1.48
USP4-202ENST00000351842 HIGD2AQ9BW72 106 aa5.79□□□□□ -1.48
USP4-202ENST00000351842 APOBP04114 4563 aaKnown RBP5.79□□□□□ -1.48
USP4-202ENST00000351842 A0A0U1RQV1 116 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 RPL28P46779 137 aaKnown RBP5.78□□□□□ -1.48
USP4-202ENST00000351842 C1orf137Q5JT78 98 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 LINC00474Q9P2X8 69 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 TLX1NBP0CAT3 122 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 ACYP1P07311 99 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 FAM19A1Q7Z5A9 133 aa5.78□□□□□ -1.48
USP4-202ENST00000351842 ATOX1O00244 68 aa5.77□□□□□ -1.49
USP4-202ENST00000351842 SMIM11BQ8TCY0 68 aa5.77□□□□□ -1.49
USP4-202ENST00000351842 VPS13BQ7Z7G8 4022 aa5.77□□□□□ -1.49
USP4-202ENST00000351842 M0R378 163 aa5.77□□□□□ -1.49
USP4-202ENST00000351842 LINC00643Q86TS7 51 aa5.77□□□□□ -1.49
USP4-202ENST00000351842 TRAV23DV6A0A075B6W5 121 aa5.76□□□□□ -1.49
USP4-202ENST00000351842 TRAV13-2A0A0B4J235 113 aa5.76□□□□□ -1.49
USP4-202ENST00000351842 DEFB105AQ8NG35 78 aa5.76□□□□□ -1.49
USP4-202ENST00000351842 SMCR5Q8TEV8 140 aa5.76□□□□□ -1.49
USP4-202ENST00000351842 ETDCA0A1B0GVM5 59 aa5.75□□□□□ -1.49
USP4-202ENST00000351842 UBE2AP49459 152 aa5.75□□□□□ -1.49
USP4-202ENST00000351842 PSORS1C2Q9UIG4 136 aa5.75□□□□□ -1.49
USP4-202ENST00000351842 OBSCN-AS1Q96MR7 158 aa5.75□□□□□ -1.49
USP4-202ENST00000351842 DMBT1Q9UGM3 2413 aaPredicted RBP5.74□□□□□ -1.49
USP4-202ENST00000351842 ZNF73O43830 326 aaPredicted RBP5.74□□□□□ -1.49
USP4-202ENST00000351842 LINC00528Q8N1L1 170 aa5.74□□□□□ -1.49
USP4-202ENST00000351842 FAM218AQ96MZ4 157 aa5.73□□□□□ -1.49
USP4-202ENST00000351842 REG3GQ6UW15 175 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 SERP2Q8N6R1 65 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms