RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FAM168BA1KXE4 195 aa5.39□□□□□ -1.55
HMGB1-203ENST00000341423 K7EP34 96 aa5.39□□□□□ -1.55
HMGB1-203ENST00000341423 PRR34Q9NV39 138 aa5.39□□□□□ -1.55
HMGB1-203ENST00000341423 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-203ENST00000341423 CAMK2N1Q7Z7J9 78 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 C2orf91Q6ZV80 131 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 TP53AIP1Q9HCN2 124 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 A0A1B0GV90 55 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 SDIM1Q6ZPB5 146 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 CNFNQ9BYD5 112 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 Q6ZR54 194 aa5.38□□□□□ -1.55
HMGB1-203ENST00000341423 C5orf42Q9H799 3197 aa5.37□□□□□ -1.55
HMGB1-203ENST00000341423 SPRR4Q96PI1 79 aa5.37□□□□□ -1.55
HMGB1-203ENST00000341423 IGLV5-39A0A0G2JS06 123 aa5.37□□□□□ -1.55
HMGB1-203ENST00000341423 COL27A1Q8IZC6 1860 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-203ENST00000341423 LINC00208Q96KT6 92 aa5.36□□□□□ -1.55
HMGB1-203ENST00000341423 GIG44P09565 113 aaPredicted RBP5.36□□□□□ -1.55
HMGB1-203ENST00000341423 PRUNE2Q8WUY3 3088 aa5.36□□□□□ -1.55
HMGB1-203ENST00000341423 ATP5EP2Q5VTU8 51 aa5.36□□□□□ -1.55
HMGB1-203ENST00000341423 COLCA2A8K830 154 aa5.36□□□□□ -1.55
HMGB1-203ENST00000341423 PCOTHQ58A44 107 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 AMELXQ99217 191 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 ERC2-IT1O76042 136 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 TLX1NBP0CAT3 122 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 A0A1W2PNN7 141 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 DSCR10P59022 87 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 CSAG1Q6PB30 78 aa5.35□□□□□ -1.55
HMGB1-203ENST00000341423 K7ERJ3 54 aa5.34□□□□□ -1.55
HMGB1-203ENST00000341423 C15orf56Q8N910 161 aa5.34□□□□□ -1.55
HMGB1-203ENST00000341423 ANAPC13Q9BS18 74 aa5.34□□□□□ -1.55
HMGB1-203ENST00000341423 GAS8-AS1O95177 125 aa5.34□□□□□ -1.55
HMGB1-203ENST00000341423 CXCL6P80162 114 aa5.34□□□□□ -1.55
HMGB1-203ENST00000341423 IGIPA6NJ69 53 aa5.34□□□□□ -1.56
HMGB1-203ENST00000341423 IGFL1Q6UW32 110 aa5.33□□□□□ -1.56
HMGB1-203ENST00000341423 LITAFQ99732 161 aa5.32□□□□□ -1.56
HMGB1-203ENST00000341423 TTTY13Q9BZ97 58 aa5.32□□□□□ -1.56
HMGB1-203ENST00000341423 LAMA2P24043 3122 aaKnown RBP5.32□□□□□ -1.56
HMGB1-203ENST00000341423 KLK9Q2XQG4 91 aa5.32□□□□□ -1.56
HMGB1-203ENST00000341423 A8MTW9 85 aa5.32□□□□□ -1.56
HMGB1-203ENST00000341423 PRRC2CQ9Y520 2896 aaKnown RBP5.32□□□□□ -1.56
HMGB1-203ENST00000341423 CR1P17927 2039 aa5.31□□□□□ -1.56
HMGB1-203ENST00000341423 VPREB1P12018 145 aa5.31□□□□□ -1.56
HMGB1-203ENST00000341423 HIGD1BQ9P298 99 aa5.31□□□□□ -1.56
HMGB1-203ENST00000341423 CD164Q04900 197 aa5.3□□□□□ -1.56
HMGB1-203ENST00000341423 FAM19A4Q96LR4 140 aa5.3□□□□□ -1.56
HMGB1-203ENST00000341423 ETDBQ3ZM63 59 aa5.29□□□□□ -1.56
HMGB1-203ENST00000341423 COX8CQ7Z4L0 72 aa5.29□□□□□ -1.56
HMGB1-203ENST00000341423 DSPP15924 2871 aaKnown RBP5.29□□□□□ -1.56
HMGB1-203ENST00000341423 F8W1H4 67 aa5.29□□□□□ -1.56
HMGB1-203ENST00000341423 H0Y9P7 68 aa5.29□□□□□ -1.56
HMGB1-203ENST00000341423 UNC80Q8N2C7 3258 aa5.28□□□□□ -1.56
HMGB1-203ENST00000341423 TAX1BP3O14907 124 aa5.28□□□□□ -1.56
HMGB1-203ENST00000341423 C9orf118A6NHY6 69 aa5.27□□□□□ -1.57
HMGB1-203ENST00000341423 A0A1B0GW54 56 aa5.27□□□□□ -1.57
HMGB1-203ENST00000341423 BRK1Q8WUW1 75 aa5.27□□□□□ -1.57
HMGB1-203ENST00000341423 XIRP2A4UGR9 3374 aa5.27□□□□□ -1.57
HMGB1-203ENST00000341423 ELOF1P60002 83 aaKnown RBP5.27□□□□□ -1.57
HMGB1-203ENST00000341423 TRAV22A0A0B4J277 110 aa5.26□□□□□ -1.57
HMGB1-203ENST00000341423 TENM2Q9NT68 2774 aa5.26□□□□□ -1.57
HMGB1-203ENST00000341423 MRPL34Q9BQ48 92 aaKnown RBP5.26□□□□□ -1.57
HMGB1-203ENST00000341423 TRBV7-7A0A0K0K1E9 115 aa5.26□□□□□ -1.57
HMGB1-203ENST00000341423 KCNQ1DNQ9H478 68 aa5.25□□□□□ -1.57
HMGB1-203ENST00000341423 WFDC2Q14508 124 aa5.25□□□□□ -1.57
HMGB1-203ENST00000341423 A0A1W2PPM0 123 aa5.23□□□□□ -1.57
HMGB1-203ENST00000341423 LOC101927531A0A1B0GV80 90 aa5.22□□□□□ -1.57
HMGB1-203ENST00000341423 DLEU1O43261 78 aa5.22□□□□□ -1.57
HMGB1-203ENST00000341423 TRIAP1O43715 76 aa5.22□□□□□ -1.57
HMGB1-203ENST00000341423 C1orf64Q8NEQ6 169 aa5.21□□□□□ -1.57
HMGB1-203ENST00000341423 ITPR1Q14643 2758 aa5.21□□□□□ -1.58
HMGB1-203ENST00000341423 TENM3Q9P273 2699 aa5.21□□□□□ -1.58
HMGB1-203ENST00000341423 PYY3Q5JQD4 70 aa5.2□□□□□ -1.58
HMGB1-203ENST00000341423 C9orf129Q5T035 196 aaKnown RBP5.2□□□□□ -1.58
HMGB1-203ENST00000341423 LINC00643Q86TS7 51 aa5.2□□□□□ -1.58
HMGB1-203ENST00000341423 IGLV5-48A0A075B6I7 105 aa5.2□□□□□ -1.58
HMGB1-203ENST00000341423 FXYD2P54710 66 aa5.2□□□□□ -1.58
HMGB1-203ENST00000341423 UQCRQO14949 82 aa5.2□□□□□ -1.58
HMGB1-203ENST00000341423 A0A1B0GVX0 72 aa5.19□□□□□ -1.58
HMGB1-203ENST00000341423 CDH23Q9H251 3354 aa5.19□□□□□ -1.58
HMGB1-203ENST00000341423 TRBV7-4A0A0J9YYF1 115 aa5.18□□□□□ -1.58
HMGB1-203ENST00000341423 KRTAP1-5Q9BYS1 174 aa5.18□□□□□ -1.58
HMGB1-203ENST00000341423 HTTP42858 3142 aa5.18□□□□□ -1.58
HMGB1-203ENST00000341423 PRR15Q8IV56 129 aa5.17□□□□□ -1.58
HMGB1-203ENST00000341423 V9GYY9 64 aa5.17□□□□□ -1.58
HMGB1-203ENST00000341423 A8MWP4 228 aa5.17□□□□□ -1.58
HMGB1-203ENST00000341423 R4GN34 69 aa5.17□□□□□ -1.58
HMGB1-203ENST00000341423 K7EQZ3 153 aa5.17□□□□□ -1.58
HMGB1-203ENST00000341423 CHD7Q9P2D1 2997 aa5.16□□□□□ -1.58
HMGB1-203ENST00000341423 LCA10Q71F78 164 aa5.16□□□□□ -1.58
HMGB1-203ENST00000341423 LINC01600Q96MT4 127 aa5.16□□□□□ -1.58
HMGB1-203ENST00000341423 SPTBN5Q9NRC6 3674 aaKnown RBP5.16□□□□□ -1.58
HMGB1-203ENST00000341423 VCANP13611 3396 aa5.16□□□□□ -1.58
HMGB1-203ENST00000341423 C8orf17Q9NRJ1 99 aa5.15□□□□□ -1.58
HMGB1-203ENST00000341423 SPINT4Q6UDR6 99 aa5.15□□□□□ -1.59
HMGB1-203ENST00000341423 KRTAP29-1A8MX34 341 aaPredicted RBP5.14□□□□□ -1.59
HMGB1-203ENST00000341423 TMEM254Q8TBM7 123 aa5.14□□□□□ -1.59
HMGB1-203ENST00000341423 C20orf166-AS1Q96NR2 134 aa5.14□□□□□ -1.59
HMGB1-203ENST00000341423 SZT2Q5T011 3432 aa5.14□□□□□ -1.59
HMGB1-203ENST00000341423 CRYBG3Q68DQ2 2970 aa5.13□□□□□ -1.59
HMGB1-203ENST00000341423 FRYQ5TBA9 3013 aa5.13□□□□□ -1.59
HMGB1-203ENST00000341423 IGLV5-45A0A087WSX0 123 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms