RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 Q6ZRP5 223 aa13.06□□□□□ -0.32
SOX2-201ENST00000325404 SYCNQ0VAF6 134 aa13.05□□□□□ -0.32
SOX2-201ENST00000325404 MGAM2Q2M2H8 2515 aa13.04□□□□□ -0.32
SOX2-201ENST00000325404 KCNQ1DNQ9H478 68 aa13.04□□□□□ -0.32
SOX2-201ENST00000325404 TENM3Q9P273 2699 aa13.04□□□□□ -0.32
SOX2-201ENST00000325404 K7EIL1 84 aa13.04□□□□□ -0.32
SOX2-201ENST00000325404 FAM19A5Q7Z5A7 132 aaPredicted RBP13.03□□□□□ -0.32
SOX2-201ENST00000325404 C11orf45Q8TAV5 145 aa13.03□□□□□ -0.32
SOX2-201ENST00000325404 MDFIQ99750 246 aa13.03□□□□□ -0.32
SOX2-201ENST00000325404 PLA2G2DQ9UNK4 145 aa13.02□□□□□ -0.32
SOX2-201ENST00000325404 TLX1NBP0CAT3 122 aa13.02□□□□□ -0.33
SOX2-201ENST00000325404 IGKV2D-24A0A075B6R9 120 aa13.01□□□□□ -0.33
SOX2-201ENST00000325404 DNAH10OSP0CZ25 163 aa13.01□□□□□ -0.33
SOX2-201ENST00000325404 DEFB131BA0A096LNP1 70 aa13.01□□□□□ -0.33
SOX2-201ENST00000325404 TM2D3Q9BRN9 247 aa13□□□□□ -0.33
SOX2-201ENST00000325404 C20orf197Q8N268 126 aa12.99□□□□□ -0.33
SOX2-201ENST00000325404 MRAPQ8TCY5 172 aa12.99□□□□□ -0.33
SOX2-201ENST00000325404 NKAPP1Q8N9T2 125 aa12.98□□□□□ -0.33
SOX2-201ENST00000325404 KLKP1Q107X0 134 aa12.97□□□□□ -0.33
SOX2-201ENST00000325404 TRAV10A0A0B4J240 114 aa12.96□□□□□ -0.33
SOX2-201ENST00000325404 IGLV5-37A0A075B6J1 123 aa12.95□□□□□ -0.34
SOX2-201ENST00000325404 C7orf33Q8WU49 177 aa12.95□□□□□ -0.34
SOX2-201ENST00000325404 A0A1B0GW54 56 aa12.94□□□□□ -0.34
SOX2-201ENST00000325404 DHRS4-AS1Q9P1J3 65 aa12.94□□□□□ -0.34
SOX2-201ENST00000325404 IGLV5-48A0A075B6I7 105 aa12.93□□□□□ -0.34
SOX2-201ENST00000325404 SERTAD4-AS1Q5TG53 156 aa12.92□□□□□ -0.34
SOX2-201ENST00000325404 PRYO14603 147 aa12.91□□□□□ -0.34
SOX2-201ENST00000325404 H7BZZ5 65 aa12.9□□□□□ -0.34
SOX2-201ENST00000325404 Q8N377 158 aa12.9□□□□□ -0.34
SOX2-201ENST00000325404 KRTAP4-16G5E9R7 235 aaPredicted RBP12.89□□□□□ -0.35
SOX2-201ENST00000325404 SPRR1AP35321 89 aa12.89□□□□□ -0.35
SOX2-201ENST00000325404 FAM236DA0A1B0GTK5 79 aa12.88□□□□□ -0.35
SOX2-201ENST00000325404 FAM236CP0DP71 79 aa12.88□□□□□ -0.35
SOX2-201ENST00000325404 NREPQ16612 68 aa12.88□□□□□ -0.35
SOX2-201ENST00000325404 Q6ZRX8 168 aa12.88□□□□□ -0.35
SOX2-201ENST00000325404 ERC2-IT1O76042 136 aa12.87□□□□□ -0.35
SOX2-201ENST00000325404 SCXQ7RTU7 201 aa12.87□□□□□ -0.35
SOX2-201ENST00000325404 IGLV1-50A0A075B6I6 118 aa12.86□□□□□ -0.35
SOX2-201ENST00000325404 NDUFC1O43677 76 aa12.86□□□□□ -0.35
SOX2-201ENST00000325404 OXTP01178 125 aa12.86□□□□□ -0.35
SOX2-201ENST00000325404 RMI2Q96E14 147 aa12.86□□□□□ -0.35
SOX2-201ENST00000325404 IGKV4-1P06312 121 aa12.84□□□□□ -0.35
SOX2-201ENST00000325404 EPM2AB3EWF7 344 aa12.84□□□□□ -0.35
SOX2-201ENST00000325404 BPY2O14599 106 aa12.83□□□□□ -0.36
SOX2-201ENST00000325404 LINC00588Q9Y4M8 146 aa12.83□□□□□ -0.36
SOX2-201ENST00000325404 HUWE1Q7Z6Z7 4374 aaKnown RBP12.83□□□□□ -0.36
SOX2-201ENST00000325404 TNP2Q05952 138 aa12.81□□□□□ -0.36
SOX2-201ENST00000325404 Q9BRP9 147 aa12.81□□□□□ -0.36
SOX2-201ENST00000325404 SERP1Q9Y6X1 66 aa12.81□□□□□ -0.36
SOX2-201ENST00000325404 ETDCA0A1B0GVM5 59 aa12.81□□□□□ -0.36
SOX2-201ENST00000325404 FUSP35637 526 aaKnown RBP eCLIP12.81□□□□□ -0.36
SOX2-201ENST00000325404 DEFB105AQ8NG35 78 aa12.81□□□□□ -0.36
SOX2-201ENST00000325404 SNURFQ9Y675 71 aa12.77□□□□□ -0.37
SOX2-201ENST00000325404 RPL37AP8A6NKH3 93 aa12.77□□□□□ -0.37
SOX2-201ENST00000325404 KRTAP7-1Q8IUC3 87 aa12.77□□□□□ -0.37
SOX2-201ENST00000325404 ATP5EP56381 51 aaPredicted RBP12.76□□□□□ -0.37
SOX2-201ENST00000325404 FAM168BA1KXE4 195 aa12.76□□□□□ -0.37
SOX2-201ENST00000325404 C3orf84H3BNL1 204 aa12.76□□□□□ -0.37
SOX2-201ENST00000325404 B9D2Q9BPU9 175 aa12.76□□□□□ -0.37
SOX2-201ENST00000325404 MRPL55Q7Z7F7 128 aaKnown RBP12.75□□□□□ -0.37
SOX2-201ENST00000325404 OCR1Q9BZK8 76 aa12.75□□□□□ -0.37
SOX2-201ENST00000325404 A0A1W2PNM2 257 aa12.75□□□□□ -0.37
SOX2-201ENST00000325404 CASC10Q5T4H9 136 aa12.75□□□□□ -0.37
SOX2-201ENST00000325404 Q8NBF4 154 aa12.74□□□□□ -0.37
SOX2-201ENST00000325404 SPRR4Q96PI1 79 aa12.74□□□□□ -0.37
SOX2-201ENST00000325404 F8WEM9 126 aa12.73□□□□□ -0.37
SOX2-201ENST00000325404 C4orf26Q17RF5 130 aa12.73□□□□□ -0.37
SOX2-201ENST00000325404 C1orf137Q5JT78 98 aa12.73□□□□□ -0.37
SOX2-201ENST00000325404 TMEM254Q8TBM7 123 aa12.73□□□□□ -0.37
SOX2-201ENST00000325404 Q8N9L7 120 aa12.73□□□□□ -0.37
SOX2-201ENST00000325404 Q5XG85 94 aa12.72□□□□□ -0.37
SOX2-201ENST00000325404 STAB2Q8WWQ8 2551 aa12.72□□□□□ -0.37
SOX2-201ENST00000325404 HRCT1Q6UXD1 115 aa12.71□□□□□ -0.37
SOX2-201ENST00000325404 ST20-AS1Q8NBB2 130 aa12.69□□□□□ -0.38
SOX2-201ENST00000325404 DNAH9Q9NYC9 4486 aa12.68□□□□□ -0.38
SOX2-201ENST00000325404 REG3GQ6UW15 175 aa12.67□□□□□ -0.38
SOX2-201ENST00000325404 A0A0U1RQV1 116 aa12.67□□□□□ -0.38
SOX2-201ENST00000325404 DNAH1Q9P2D7 4330 aa12.67□□□□□ -0.38
SOX2-201ENST00000325404 COL7A1Q02388 2944 aa12.65□□□□□ -0.39
SOX2-201ENST00000325404 UBE2BP63146 152 aa12.64□□□□□ -0.39
SOX2-201ENST00000325404 SMIM29Q86T20 159 aa12.63□□□□□ -0.39
SOX2-201ENST00000325404 LCE6AA0A183 80 aa12.61□□□□□ -0.39
SOX2-201ENST00000325404 SMIM26A0A096LP01 95 aa12.6□□□□□ -0.39
SOX2-201ENST00000325404 CNBPP62633 177 aaKnown RBP12.6□□□□□ -0.39
SOX2-201ENST00000325404 C16orf90A8MZG2 172 aa12.59□□□□□ -0.39
SOX2-201ENST00000325404 IGLV8-61A0A075B6I0 122 aa12.58□□□□□ -0.4
SOX2-201ENST00000325404 DSCR10P59022 87 aa12.58□□□□□ -0.4
SOX2-201ENST00000325404 PRO0628Q9UI54 55 aa12.57□□□□□ -0.4
SOX2-201ENST00000325404 LINC00476Q8WZB0 136 aa12.56□□□□□ -0.4
SOX2-201ENST00000325404 APLNQ9ULZ1 77 aa12.55□□□□□ -0.4
SOX2-201ENST00000325404 A0A096LNI7 61 aa12.53□□□□□ -0.4
SOX2-201ENST00000325404 UBE2DNLQ8IWF7 75 aa12.53□□□□□ -0.4
SOX2-201ENST00000325404 DNHD1Q96M86 4753 aa12.52□□□□□ -0.41
SOX2-201ENST00000325404 IGFL1Q6UW32 110 aa12.51□□□□□ -0.41
SOX2-201ENST00000325404 HIGD2AQ9BW72 106 aa12.5□□□□□ -0.41
SOX2-201ENST00000325404 NUPR2A6NF83 97 aa12.5□□□□□ -0.41
SOX2-201ENST00000325404 C14orf177Q52M58 125 aa12.5□□□□□ -0.41
SOX2-201ENST00000325404 FAM30AQ9NZY2 134 aa12.5□□□□□ -0.41
SOX2-201ENST00000325404 A0A1W2PNN7 141 aa12.49□□□□□ -0.41
SOX2-201ENST00000325404 K7EQZ3 153 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms