RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 DNAH8Q96JB1 4490 aa11.49□□□□□ -0.57
HMGA1-201ENST00000311487 APOBP04114 4563 aaKnown RBP11.49□□□□□ -0.57
HMGA1-201ENST00000311487 SMR3BP02814 79 aaPredicted RBP11.48□□□□□ -0.57
HMGA1-201ENST00000311487 SERTAD4-AS1Q5TG53 156 aa11.48□□□□□ -0.57
HMGA1-201ENST00000311487 KRTAP7-1Q8IUC3 87 aa11.48□□□□□ -0.57
HMGA1-201ENST00000311487 Q8NDZ9 215 aa11.48□□□□□ -0.57
HMGA1-201ENST00000311487 LST1O00453 97 aa11.47□□□□□ -0.57
HMGA1-201ENST00000311487 SLC25A20O43772 301 aa11.47□□□□□ -0.57
HMGA1-201ENST00000311487 KIAA1109Q2LD37 5005 aa11.47□□□□□ -0.57
HMGA1-201ENST00000311487 PRR3P79522 188 aaKnown RBP11.47□□□□□ -0.57
HMGA1-201ENST00000311487 LINC00474Q9P2X8 69 aa11.46□□□□□ -0.58
HMGA1-201ENST00000311487 M0QXV9 152 aa11.45□□□□□ -0.58
HMGA1-201ENST00000311487 MT-ATP8P03928 68 aa11.45□□□□□ -0.58
HMGA1-201ENST00000311487 B5MCH6 92 aa11.44□□□□□ -0.58
HMGA1-201ENST00000311487 TEN1Q86WV5 123 aa11.44□□□□□ -0.58
HMGA1-201ENST00000311487 PKIGQ9Y2B9 76 aa11.44□□□□□ -0.58
HMGA1-201ENST00000311487 TRBV10-2A0A0K0K1G8 114 aa11.43□□□□□ -0.58
HMGA1-201ENST00000311487 RPL28P46779 137 aaKnown RBP11.43□□□□□ -0.58
HMGA1-201ENST00000311487 PHF5AQ7RTV0 110 aaKnown RBP11.43□□□□□ -0.58
HMGA1-201ENST00000311487 ANKRD29Q8N6D5 301 aa11.43□□□□□ -0.58
HMGA1-201ENST00000311487 LINC01600Q96MT4 127 aa11.43□□□□□ -0.58
HMGA1-201ENST00000311487 SMIM20Q8N5G0 67 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 PLAC8Q9NZF1 115 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 BIRC6Q9NR09 4857 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 SMIM11BQ8TCY0 68 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 PPDPFLQ8WWR9 84 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 KRTAP17-1Q9BYP8 105 aa11.41□□□□□ -0.58
HMGA1-201ENST00000311487 HSPG2P98160 4391 aa11.4□□□□□ -0.58
HMGA1-201ENST00000311487 NDUFC2O95298 119 aa11.4□□□□□ -0.58
HMGA1-201ENST00000311487 C22orf24Q9Y442 160 aa11.39□□□□□ -0.59
HMGA1-201ENST00000311487 NCR3O14931 201 aa11.39□□□□□ -0.59
HMGA1-201ENST00000311487 CDK2AP2O75956 126 aa11.38□□□□□ -0.59
HMGA1-201ENST00000311487 OR13C6PQ8NH95 151 aa11.38□□□□□ -0.59
HMGA1-201ENST00000311487 RPL37AP8A6NKH3 93 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 H3BT86 120 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 VPREB1P12018 145 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 KRTAP11-1Q8IUC1 163 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 FAM218AQ96MZ4 157 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 RYR1P21817 5038 aa11.37□□□□□ -0.59
HMGA1-201ENST00000311487 NKAPP1Q8N9T2 125 aa11.36□□□□□ -0.59
HMGA1-201ENST00000311487 TRACP01848 142 aa11.35□□□□□ -0.59
HMGA1-201ENST00000311487 Q6Q795 121 aa11.35□□□□□ -0.59
HMGA1-201ENST00000311487 FAT1Q14517 4588 aa11.34□□□□□ -0.59
HMGA1-201ENST00000311487 NDUFV3P56181 108 aaKnown RBP11.33□□□□□ -0.6
HMGA1-201ENST00000311487 MRPL55Q7Z7F7 128 aaKnown RBP11.33□□□□□ -0.6
HMGA1-201ENST00000311487 C7orf33Q8WU49 177 aa11.33□□□□□ -0.6
HMGA1-201ENST00000311487 LINC00167Q96N53 147 aa11.33□□□□□ -0.6
HMGA1-201ENST00000311487 LINC00528Q8N1L1 170 aa11.33□□□□□ -0.6
HMGA1-201ENST00000311487 UBE2BP63146 152 aa11.32□□□□□ -0.6
HMGA1-201ENST00000311487 VPS13BQ7Z7G8 4022 aa11.32□□□□□ -0.6
HMGA1-201ENST00000311487 TMEM126AQ9H061 195 aa11.31□□□□□ -0.6
HMGA1-201ENST00000311487 PLA2G2DQ9UNK4 145 aa11.31□□□□□ -0.6
HMGA1-201ENST00000311487 EPM2AB3EWF7 344 aa11.31□□□□□ -0.6
HMGA1-201ENST00000311487 H0YGX0 51 aa11.31□□□□□ -0.6
HMGA1-201ENST00000311487 TEX49A0A1B0GTD5 131 aa11.29□□□□□ -0.6
HMGA1-201ENST00000311487 C5orf47Q569G3 176 aa11.28□□□□□ -0.6
HMGA1-201ENST00000311487 IGLV5-37A0A075B6J1 123 aa11.27□□□□□ -0.6
HMGA1-201ENST00000311487 CCDC179H3BU77 68 aa11.27□□□□□ -0.6
HMGA1-201ENST00000311487 SNCGO76070 127 aa11.27□□□□□ -0.6
HMGA1-201ENST00000311487 SRRM2Q9UQ35 2752 aaKnown RBP11.27□□□□□ -0.6
HMGA1-201ENST00000311487 M0R378 163 aa11.26□□□□□ -0.61
HMGA1-201ENST00000311487 PSORS1C2Q9UIG4 136 aa11.26□□□□□ -0.61
HMGA1-201ENST00000311487 TRBV10-3A0A0K0K1G6 114 aa11.25□□□□□ -0.61
HMGA1-201ENST00000311487 S100A7L2Q5SY68 101 aa11.25□□□□□ -0.61
HMGA1-201ENST00000311487 BAALC-AS2P0C853 105 aa11.25□□□□□ -0.61
HMGA1-201ENST00000311487 Q5VSD8 79 aa11.24□□□□□ -0.61
HMGA1-201ENST00000311487 IGLV1-50A0A075B6I6 118 aa11.23□□□□□ -0.61
HMGA1-201ENST00000311487 IGLV6-57P01721 117 aa11.23□□□□□ -0.61
HMGA1-201ENST00000311487 RPL37AP61513 92 aaKnown RBP11.23□□□□□ -0.61
HMGA1-201ENST00000311487 C1orf137Q5JT78 98 aa11.23□□□□□ -0.61
HMGA1-201ENST00000311487 KRTAP4-5Q9BYR2 181 aa11.23□□□□□ -0.61
HMGA1-201ENST00000311487 DNAL4O96015 105 aa11.22□□□□□ -0.61
HMGA1-201ENST00000311487 FAM229AH3BQW9 127 aa11.21□□□□□ -0.62
HMGA1-201ENST00000311487 C6orf99Q4VX62 202 aa11.21□□□□□ -0.62
HMGA1-201ENST00000311487 Q8N1X5 172 aa11.21□□□□□ -0.62
HMGA1-201ENST00000311487 A0A1B0GX51 115 aa11.18□□□□□ -0.62
HMGA1-201ENST00000311487 KRTAP10-4P60372 401 aaPredicted RBP11.17□□□□□ -0.62
HMGA1-201ENST00000311487 REG3GQ6UW15 175 aa11.16□□□□□ -0.62
HMGA1-201ENST00000311487 TRAV23DV6A0A075B6W5 121 aa11.15□□□□□ -0.62
HMGA1-201ENST00000311487 HERC2O95714 4834 aa11.15□□□□□ -0.62
HMGA1-201ENST00000311487 PRLHP81277 87 aa11.14□□□□□ -0.63
HMGA1-201ENST00000311487 PLA2G1BP04054 148 aaKnown RBP11.13□□□□□ -0.63
HMGA1-201ENST00000311487 LINC00575Q6W349 94 aa11.13□□□□□ -0.63
HMGA1-201ENST00000311487 KCNQ1DNQ9H478 68 aa11.13□□□□□ -0.63
HMGA1-201ENST00000311487 ORMDL1Q9P0S3 153 aa11.13□□□□□ -0.63
HMGA1-201ENST00000311487 FAM19A1Q7Z5A9 133 aa11.13□□□□□ -0.63
HMGA1-201ENST00000311487 BCE1O60756 84 aa11.11□□□□□ -0.63
HMGA1-201ENST00000311487 IGLV7-43P04211 117 aa11.11□□□□□ -0.63
HMGA1-201ENST00000311487 DIRC1Q969H9 104 aa11.11□□□□□ -0.63
HMGA1-201ENST00000311487 ZNF73O43830 326 aaPredicted RBP11.1□□□□□ -0.63
HMGA1-201ENST00000311487 FAM240AA0A1B0GVK7 77 aa11.09□□□□□ -0.63
HMGA1-201ENST00000311487 PRYO14603 147 aa11.09□□□□□ -0.63
HMGA1-201ENST00000311487 UBE2AP49459 152 aa11.09□□□□□ -0.63
HMGA1-201ENST00000311487 INAFM2P0DMQ5 153 aa11.08□□□□□ -0.64
HMGA1-201ENST00000311487 OBSCN-AS1Q96MR7 158 aa11.08□□□□□ -0.64
HMGA1-201ENST00000311487 hADV29S1A0JD25 119 aa11.07□□□□□ -0.64
HMGA1-201ENST00000311487 J3KT08 172 aa11.07□□□□□ -0.64
HMGA1-201ENST00000311487 ETDCA0A1B0GVM5 59 aa11.07□□□□□ -0.64
HMGA1-201ENST00000311487 FLG2Q5D862 2391 aaPredicted RBP11.06□□□□□ -0.64
HMGA1-201ENST00000311487 KRTAP4-16G5E9R7 235 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms