RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 TLX1NBP0CAT3 122 aa5.1□□□□□ -1.59
SF3B3-201ENST00000302516 A8MUN3 132 aa5.1□□□□□ -1.59
SF3B3-201ENST00000302516 LINC00588Q9Y4M8 146 aa5.1□□□□□ -1.59
SF3B3-201ENST00000302516 PRR34Q9NV39 138 aa5.1□□□□□ -1.59
SF3B3-201ENST00000302516 IGFL1Q6UW32 110 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 CSNK1G2-AS1Q8NCQ2 148 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 CRIPTQ9P021 101 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 C8orf17Q9NRJ1 99 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 Q96NJ1 140 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 OBSCN-AS1Q96MR7 158 aa5.09□□□□□ -1.59
SF3B3-201ENST00000302516 SSBP3-AS1Q7Z2R9 100 aa5.08□□□□□ -1.6
SF3B3-201ENST00000302516 LCA10Q71F78 164 aa5.08□□□□□ -1.6
SF3B3-201ENST00000302516 Q1T7F1 81 aa5.08□□□□□ -1.6
SF3B3-201ENST00000302516 CDC42SE1Q9NRR8 79 aa5.08□□□□□ -1.6
SF3B3-201ENST00000302516 WIPF1O43516 503 aa5.07□□□□□ -1.6
SF3B3-201ENST00000302516 IGLV8-61A0A075B6I0 122 aa5.07□□□□□ -1.6
SF3B3-201ENST00000302516 FAM168BA1KXE4 195 aa5.07□□□□□ -1.6
SF3B3-201ENST00000302516 CHTF8P0CG12 524 aa5.06□□□□□ -1.6
SF3B3-201ENST00000302516 LINC00336Q6ZUF6 198 aa5.06□□□□□ -1.6
SF3B3-201ENST00000302516 LINC00612Q8N6U2 182 aa5.06□□□□□ -1.6
SF3B3-201ENST00000302516 ITPR3Q14573 2671 aa5.06□□□□□ -1.6
SF3B3-201ENST00000302516 PLA2G1BP04054 148 aaKnown RBP5.05□□□□□ -1.6
SF3B3-201ENST00000302516 C15orf56Q8N910 161 aa5.05□□□□□ -1.6
SF3B3-201ENST00000302516 Q8N377 158 aa5.04□□□□□ -1.6
SF3B3-201ENST00000302516 GCN1Q92616 2671 aaKnown RBP5.03□□□□□ -1.6
SF3B3-201ENST00000302516 ZNF861PO60384 105 aa5.02□□□□□ -1.61
SF3B3-201ENST00000302516 C9orf129Q5T035 196 aaKnown RBP5.02□□□□□ -1.61
SF3B3-201ENST00000302516 STAB1Q9NY15 2570 aa5.02□□□□□ -1.61
SF3B3-201ENST00000302516 LINC00304Q8N9R0 145 aa5.01□□□□□ -1.61
SF3B3-201ENST00000302516 IGLV5-37A0A075B6J1 123 aa5.01□□□□□ -1.61
SF3B3-201ENST00000302516 CNBPP62633 177 aaKnown RBP5□□□□□ -1.61
SF3B3-201ENST00000302516 IGLV5-48A0A075B6I7 105 aa5□□□□□ -1.61
SF3B3-201ENST00000302516 EP400Q96L91 3159 aa5□□□□□ -1.61
SF3B3-201ENST00000302516 MGAM2Q2M2H8 2515 aa4.99□□□□□ -1.61
SF3B3-201ENST00000302516 DSCR10P59022 87 aa4.99□□□□□ -1.61
SF3B3-201ENST00000302516 OCR1Q9BZK8 76 aa4.99□□□□□ -1.61
SF3B3-201ENST00000302516 BAHCC1Q9P281 2608 aa4.98□□□□□ -1.61
SF3B3-201ENST00000302516 Q75L30 129 aa4.98□□□□□ -1.61
SF3B3-201ENST00000302516 EIF4EBP3O60516 100 aaPredicted RBP4.98□□□□□ -1.61
SF3B3-201ENST00000302516 FAM104AQ969W3 186 aa4.98□□□□□ -1.61
SF3B3-201ENST00000302516 UTP20O75691 2785 aaKnown RBP4.98□□□□□ -1.61
SF3B3-201ENST00000302516 APLNQ9ULZ1 77 aa4.97□□□□□ -1.61
SF3B3-201ENST00000302516 FLNAP21333 2647 aaKnown RBP4.97□□□□□ -1.61
SF3B3-201ENST00000302516 C19orf73Q9NVV2 129 aa4.96□□□□□ -1.61
SF3B3-201ENST00000302516 BPTFQ12830 3046 aa4.96□□□□□ -1.61
SF3B3-201ENST00000302516 SPRR4Q96PI1 79 aa4.96□□□□□ -1.62
SF3B3-201ENST00000302516 GIG44P09565 113 aaPredicted RBP4.95□□□□□ -1.62
SF3B3-201ENST00000302516 CENPFP49454 3210 aa4.95□□□□□ -1.62
SF3B3-201ENST00000302516 C9orf163Q8N9P6 203 aa4.94□□□□□ -1.62
SF3B3-201ENST00000302516 FLG2Q5D862 2391 aaPredicted RBP4.94□□□□□ -1.62
SF3B3-201ENST00000302516 DMBT1Q9UGM3 2413 aaPredicted RBP4.94□□□□□ -1.62
SF3B3-201ENST00000302516 WWC2-AS2Q96NR7 200 aa4.94□□□□□ -1.62
SF3B3-201ENST00000302516 KRTAP24-1Q3LI83 254 aa4.93□□□□□ -1.62
SF3B3-201ENST00000302516 A0A1W2PNM2 257 aa4.93□□□□□ -1.62
SF3B3-201ENST00000302516 IGLV7-46A0A075B6I9 117 aa4.93□□□□□ -1.62
SF3B3-201ENST00000302516 IGLV7-43P04211 117 aa4.93□□□□□ -1.62
SF3B3-201ENST00000302516 RBM12B-AS1Q9P1G2 102 aa4.92□□□□□ -1.62
SF3B3-201ENST00000302516 CFAP46Q8IYW2 2715 aa4.92□□□□□ -1.62
SF3B3-201ENST00000302516 UNC79Q9P2D8 2635 aa4.92□□□□□ -1.62
SF3B3-201ENST00000302516 A0A096LNT2 108 aa4.91□□□□□ -1.62
SF3B3-201ENST00000302516 A0A087WTM6 91 aa4.91□□□□□ -1.62
SF3B3-201ENST00000302516 LUZP6Q538Z0 58 aa4.91□□□□□ -1.62
SF3B3-201ENST00000302516 KRTAP10-11P60412 298 aa4.9□□□□□ -1.62
SF3B3-201ENST00000302516 NBEAL1Q6ZS30 2694 aa4.89□□□□□ -1.63
SF3B3-201ENST00000302516 PSORS1C2Q9UIG4 136 aa4.88□□□□□ -1.63
SF3B3-201ENST00000302516 COX6B2Q6YFQ2 88 aa4.88□□□□□ -1.63
SF3B3-201ENST00000302516 K7EIL1 84 aa4.87□□□□□ -1.63
SF3B3-201ENST00000302516 ZNF575Q86XF7 245 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 C9orf92A6NGG3 77 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 Q5XG85 94 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 LINC01558Q9Y6Z2 57 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 FAM229BQ4G0N7 80 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 LINC00483Q53H64 154 aa4.86□□□□□ -1.63
SF3B3-201ENST00000302516 A0A1W2PNN7 141 aa4.85□□□□□ -1.63
SF3B3-201ENST00000302516 TEP1Q99973 2627 aaKnown RBP4.85□□□□□ -1.63
SF3B3-201ENST00000302516 A0A1B0GU33 70 aa4.84□□□□□ -1.63
SF3B3-201ENST00000302516 J3QL48 77 aa4.84□□□□□ -1.63
SF3B3-201ENST00000302516 LINC01554Q52M75 96 aa4.83□□□□□ -1.64
SF3B3-201ENST00000302516 DMAC1Q96GE9 116 aa4.83□□□□□ -1.64
SF3B3-201ENST00000302516 Q8N1X5 172 aa4.83□□□□□ -1.64
SF3B3-201ENST00000302516 A0A0G2JQZ4 141 aa4.82□□□□□ -1.64
SF3B3-201ENST00000302516 KMT2BQ9UMN6 2715 aaPredicted RBP4.82□□□□□ -1.64
SF3B3-201ENST00000302516 Q8N9P0 234 aaPredicted RBP4.82□□□□□ -1.64
SF3B3-201ENST00000302516 A0A0D9SG42 100 aa4.82□□□□□ -1.64
SF3B3-201ENST00000302516 ASB16-AS1Q495Z4 193 aa4.82□□□□□ -1.64
SF3B3-201ENST00000302516 HRES1P13985 223 aa4.81□□□□□ -1.64
SF3B3-201ENST00000302516 AKAP13Q12802 2813 aa4.8□□□□□ -1.64
SF3B3-201ENST00000302516 MMP24-AS1A0A0U1RRL7 71 aa4.79□□□□□ -1.64
SF3B3-201ENST00000302516 KRTAP10-3P60369 221 aa4.79□□□□□ -1.64
SF3B3-201ENST00000302516 Q5VV11 94 aa4.79□□□□□ -1.64
SF3B3-201ENST00000302516 FP248Q71RG6 208 aaPredicted RBP4.79□□□□□ -1.64
SF3B3-201ENST00000302516 ANAPC11Q9NYG5 84 aa4.78□□□□□ -1.64
SF3B3-201ENST00000302516 SPRR1AP35321 89 aa4.78□□□□□ -1.64
SF3B3-201ENST00000302516 PRR26Q8N8Z3 221 aa4.78□□□□□ -1.64
SF3B3-201ENST00000302516 ZCCHC13Q8WW36 166 aaKnown RBP4.76□□□□□ -1.65
SF3B3-201ENST00000302516 CASC10Q5T4H9 136 aa4.76□□□□□ -1.65
SF3B3-201ENST00000302516 STAB2Q8WWQ8 2551 aa4.76□□□□□ -1.65
SF3B3-201ENST00000302516 COL6A5A8TX70 2615 aa4.75□□□□□ -1.65
SF3B3-201ENST00000302516 SPRR1BP22528 89 aa4.75□□□□□ -1.65
SF3B3-201ENST00000302516 CHD6Q8TD26 2715 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms