RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 C9orf163Q8N9P6 203 aa12.28□□□□□ -0.44
PCDH1-201ENST00000287008 IGLV1-50A0A075B6I6 118 aa12.27□□□□□ -0.44
PCDH1-201ENST00000287008 KCNQ1DNQ9H478 68 aa12.27□□□□□ -0.45
PCDH1-201ENST00000287008 C7orf65Q6ZTY9 151 aa12.26□□□□□ -0.45
PCDH1-201ENST00000287008 C15orf56Q8N910 161 aa12.26□□□□□ -0.45
PCDH1-201ENST00000287008 CDIP1Q9H305 208 aa12.26□□□□□ -0.45
PCDH1-201ENST00000287008 CHD9Q3L8U1 2897 aa12.25□□□□□ -0.45
PCDH1-201ENST00000287008 TRBV7-4A0A0J9YYF1 115 aa12.25□□□□□ -0.45
PCDH1-201ENST00000287008 C5orf42Q9H799 3197 aa12.24□□□□□ -0.45
PCDH1-201ENST00000287008 NBEAL1Q6ZS30 2694 aa12.23□□□□□ -0.45
PCDH1-201ENST00000287008 PRO0461Q9UI25 63 aa12.22□□□□□ -0.45
PCDH1-201ENST00000287008 NOTCH1P46531 2555 aa12.22□□□□□ -0.45
PCDH1-201ENST00000287008 ATP11AUNQ6ZP68 121 aa12.21□□□□□ -0.45
PCDH1-201ENST00000287008 ZNF861PO60384 105 aa12.21□□□□□ -0.45
PCDH1-201ENST00000287008 LINC00336Q6ZUF6 198 aa12.21□□□□□ -0.45
PCDH1-201ENST00000287008 LINC00528Q8N1L1 170 aa12.21□□□□□ -0.46
PCDH1-201ENST00000287008 TRAV22A0A0B4J277 110 aa12.2□□□□□ -0.46
PCDH1-201ENST00000287008 Q96NJ1 140 aa12.2□□□□□ -0.46
PCDH1-201ENST00000287008 APLNQ9ULZ1 77 aa12.19□□□□□ -0.46
PCDH1-201ENST00000287008 MGAQ8IWI9 3026 aa12.19□□□□□ -0.46
PCDH1-201ENST00000287008 PSPHP1O15172 72 aa12.18□□□□□ -0.46
PCDH1-201ENST00000287008 SSBP3-AS1Q7Z2R9 100 aa12.18□□□□□ -0.46
PCDH1-201ENST00000287008 ACYP2P14621 99 aa12.18□□□□□ -0.46
PCDH1-201ENST00000287008 UNC79Q9P2D8 2635 aa12.18□□□□□ -0.46
PCDH1-201ENST00000287008 SMR3BP02814 79 aaPredicted RBP12.18□□□□□ -0.46
PCDH1-201ENST00000287008 C8orf87E5RJ46 101 aa12.17□□□□□ -0.46
PCDH1-201ENST00000287008 H3BPC8 53 aa12.16□□□□□ -0.46
PCDH1-201ENST00000287008 BAHCC1Q9P281 2608 aa12.16□□□□□ -0.46
PCDH1-201ENST00000287008 TLX1NBP0CAT3 122 aa12.14□□□□□ -0.47
PCDH1-201ENST00000287008 SPAG11AQ6PDA7 123 aa12.14□□□□□ -0.47
PCDH1-201ENST00000287008 LINC00304Q8N9R0 145 aa12.14□□□□□ -0.47
PCDH1-201ENST00000287008 C9orf129Q5T035 196 aaKnown RBP12.13□□□□□ -0.47
PCDH1-201ENST00000287008 A0A0C4DFX4 3053 aa12.13□□□□□ -0.47
PCDH1-201ENST00000287008 A8MWP4 228 aa12.12□□□□□ -0.47
PCDH1-201ENST00000287008 EIF4EBP3O60516 100 aaPredicted RBP12.12□□□□□ -0.47
PCDH1-201ENST00000287008 ZNF575Q86XF7 245 aa12.11□□□□□ -0.47
PCDH1-201ENST00000287008 PMAIP1Q13794 54 aa12.1□□□□□ -0.47
PCDH1-201ENST00000287008 A0A1B0GU69 56 aa12.08□□□□□ -0.48
PCDH1-201ENST00000287008 MRPL34Q9BQ48 92 aaKnown RBP12.08□□□□□ -0.48
PCDH1-201ENST00000287008 PLA2G2DQ9UNK4 145 aa12.08□□□□□ -0.48
PCDH1-201ENST00000287008 IGFL1Q6UW32 110 aa12.07□□□□□ -0.48
PCDH1-201ENST00000287008 CASC10Q5T4H9 136 aa12.07□□□□□ -0.48
PCDH1-201ENST00000287008 CNBPP62633 177 aaKnown RBP12.07□□□□□ -0.48
PCDH1-201ENST00000287008 DSPP15924 2871 aaKnown RBP12.06□□□□□ -0.48
PCDH1-201ENST00000287008 HTTP42858 3142 aa12.06□□□□□ -0.48
PCDH1-201ENST00000287008 LOC101927531A0A1B0GV80 90 aa12.06□□□□□ -0.48
PCDH1-201ENST00000287008 MAP1AP78559 2803 aaPredicted RBP12.05□□□□□ -0.48
PCDH1-201ENST00000287008 IGLV7-43P04211 117 aa12.05□□□□□ -0.48
PCDH1-201ENST00000287008 PSORS1C2Q9UIG4 136 aa12.05□□□□□ -0.48
PCDH1-201ENST00000287008 COX6B2Q6YFQ2 88 aa12.04□□□□□ -0.48
PCDH1-201ENST00000287008 A0A1W2PNN7 141 aa12.03□□□□□ -0.48
PCDH1-201ENST00000287008 K7EQZ3 153 aa12.03□□□□□ -0.48
PCDH1-201ENST00000287008 Q8N377 158 aa12.03□□□□□ -0.48
PCDH1-201ENST00000287008 C1orf195Q5TG92 126 aa12□□□□□ -0.49
PCDH1-201ENST00000287008 UBR5O95071 2799 aaPredicted RBP11.99□□□□□ -0.49
PCDH1-201ENST00000287008 WIPF1O43516 503 aa11.99□□□□□ -0.49
PCDH1-201ENST00000287008 ANAPC11Q9NYG5 84 aa11.99□□□□□ -0.49
PCDH1-201ENST00000287008 LAMA3Q16787 3333 aa11.98□□□□□ -0.49
PCDH1-201ENST00000287008 TRANK1O15050 2925 aa11.98□□□□□ -0.49
PCDH1-201ENST00000287008 IGSF10Q6WRI0 2623 aa11.97□□□□□ -0.49
PCDH1-201ENST00000287008 WDFY4Q6ZS81 3184 aa11.97□□□□□ -0.49
PCDH1-201ENST00000287008 PRR15Q8IV56 129 aa11.96□□□□□ -0.49
PCDH1-201ENST00000287008 CFAP54Q96N23 3096 aa11.96□□□□□ -0.49
PCDH1-201ENST00000287008 DSCR10P59022 87 aa11.96□□□□□ -0.49
PCDH1-201ENST00000287008 C8orf17Q9NRJ1 99 aa11.96□□□□□ -0.5
PCDH1-201ENST00000287008 TNP2Q05952 138 aa11.95□□□□□ -0.5
PCDH1-201ENST00000287008 OBSCN-AS1Q96MR7 158 aa11.95□□□□□ -0.5
PCDH1-201ENST00000287008 GCN1Q92616 2671 aaKnown RBP11.94□□□□□ -0.5
PCDH1-201ENST00000287008 SPRR4Q96PI1 79 aa11.94□□□□□ -0.5
PCDH1-201ENST00000287008 A0A1B0GVX0 72 aa11.93□□□□□ -0.5
PCDH1-201ENST00000287008 A0A0G2JQZ4 141 aa11.91□□□□□ -0.5
PCDH1-201ENST00000287008 C9orf92A6NGG3 77 aa11.91□□□□□ -0.5
PCDH1-201ENST00000287008 FLG2Q5D862 2391 aaPredicted RBP11.9□□□□□ -0.5
PCDH1-201ENST00000287008 ERC2-IT1O76042 136 aa11.9□□□□□ -0.5
PCDH1-201ENST00000287008 TRIOO75962 3097 aa11.86□□□□□ -0.51
PCDH1-201ENST00000287008 NSD1Q96L73 2696 aaPredicted RBP11.85□□□□□ -0.51
PCDH1-201ENST00000287008 CR1P17927 2039 aa11.85□□□□□ -0.51
PCDH1-201ENST00000287008 MKI67P46013 3256 aaKnown RBP11.84□□□□□ -0.51
PCDH1-201ENST00000287008 IGLV8-61A0A075B6I0 122 aa11.84□□□□□ -0.51
PCDH1-201ENST00000287008 IGLV5-37A0A075B6J1 123 aa11.83□□□□□ -0.51
PCDH1-201ENST00000287008 PRUNE2Q8WUY3 3088 aa11.8□□□□□ -0.52
PCDH1-201ENST00000287008 A0A1W2PNM2 257 aa11.79□□□□□ -0.52
PCDH1-201ENST00000287008 STAB2Q8WWQ8 2551 aa11.77□□□□□ -0.53
PCDH1-201ENST00000287008 LINC01600Q96MT4 127 aa11.76□□□□□ -0.53
PCDH1-201ENST00000287008 LAMA2P24043 3122 aaKnown RBP11.74□□□□□ -0.53
PCDH1-201ENST00000287008 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.74□□□□□ -0.53
PCDH1-201ENST00000287008 RPS28P62857 69 aaKnown RBP11.74□□□□□ -0.53
PCDH1-201ENST00000287008 DMBT1Q9UGM3 2413 aaPredicted RBP11.74□□□□□ -0.53
PCDH1-201ENST00000287008 RBM12B-AS1Q9P1G2 102 aa11.73□□□□□ -0.53
PCDH1-201ENST00000287008 COA5Q86WW8 74 aa11.72□□□□□ -0.53
PCDH1-201ENST00000287008 IGLV5-48A0A075B6I7 105 aa11.71□□□□□ -0.53
PCDH1-201ENST00000287008 BRCA2P51587 3418 aa11.69□□□□□ -0.54
PCDH1-201ENST00000287008 PRR26Q8N8Z3 221 aa11.65□□□□□ -0.54
PCDH1-201ENST00000287008 NBEAL2Q6ZNJ1 2754 aa11.65□□□□□ -0.55
PCDH1-201ENST00000287008 CD164Q04900 197 aa11.64□□□□□ -0.55
PCDH1-201ENST00000287008 FLNCQ14315 2725 aa11.63□□□□□ -0.55
PCDH1-201ENST00000287008 KLKP1Q107X0 134 aa11.63□□□□□ -0.55
PCDH1-201ENST00000287008 FRYQ5TBA9 3013 aa11.62□□□□□ -0.55
PCDH1-201ENST00000287008 UQCR11O14957 56 aa11.62□□□□□ -0.55
PCDH1-201ENST00000287008 PRO0628Q9UI54 55 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms