RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 PAM16Q9Y3D7 125 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 SRRM2Q9UQ35 2752 aaKnown RBP3.93□□□□□ -1.78
CD44-204ENST00000279452 A6NDN8 102 aa3.93□□□□□ -1.78
CD44-204ENST00000279452 MT1HL1P0DM35 61 aa3.93□□□□□ -1.78
CD44-204ENST00000279452 HINT1P49773 126 aaPredicted RBP3.93□□□□□ -1.78
CD44-204ENST00000279452 SPATA45Q537H7 98 aa3.93□□□□□ -1.78
CD44-204ENST00000279452 MUSTN1Q8IVN3 82 aa3.93□□□□□ -1.78
CD44-204ENST00000279452 KCNQ1DNQ9H478 68 aa3.93□□□□□ -1.78
CD44-204ENST00000279452 FLG2Q5D862 2391 aaPredicted RBP3.93□□□□□ -1.78
CD44-204ENST00000279452 ZNF73O43830 326 aaPredicted RBP3.92□□□□□ -1.78
CD44-204ENST00000279452 IGLV6-57P01721 117 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 KRTAP1-4P0C5Y4 121 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 IFITM1P13164 125 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 RPL13AP40429 203 aaKnown RBP3.92□□□□□ -1.78
CD44-204ENST00000279452 Q6ZVH6 145 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 KRTAP13-1Q8IUC0 172 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 LINC00518Q8N0U6 118 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 LINC00337Q8N6G1 96 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 ANAPC11Q9NYG5 84 aa3.92□□□□□ -1.78
CD44-204ENST00000279452 ZNF706Q9Y5V0 76 aaPredicted RBP3.92□□□□□ -1.78
CD44-204ENST00000279452 COX8AP10176 69 aa3.91□□□□□ -1.78
CD44-204ENST00000279452 CRYGAP11844 174 aa3.91□□□□□ -1.78
CD44-204ENST00000279452 JOSD1Q15040 202 aaPredicted RBP3.91□□□□□ -1.78
CD44-204ENST00000279452 C14orf144Q96I85 54 aa3.91□□□□□ -1.78
CD44-204ENST00000279452 HIST1H4GQ99525 98 aa3.91□□□□□ -1.78
CD44-204ENST00000279452 B5MCH6 92 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 SPRR1AP35321 89 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 Q6ZRX8 168 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 TYMSOSQ8TAI1 123 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 SMCR5Q8TEV8 140 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 C12orf57Q99622 126 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 PPDPFQ9H3Y8 114 aa3.9□□□□□ -1.79
CD44-204ENST00000279452 A0A087X002 238 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 TRAV13-2A0A0B4J235 113 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 KRTAP10-8P60410 259 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 C6orf99Q4VX62 202 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 GAGE2AQ6NT46 116 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 SLC25A34Q6PIV7 304 aa3.89□□□□□ -1.79
CD44-204ENST00000279452 A4D1N5 150 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 KRTAP4-16G5E9R7 235 aaPredicted RBP3.88□□□□□ -1.79
CD44-204ENST00000279452 COX7BP24311 80 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 FAM229BQ4G0N7 80 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 PYY3Q5JQD4 70 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 SPRR4Q96PI1 79 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 MYCBP2O75592 4640 aa3.88□□□□□ -1.79
CD44-204ENST00000279452 IGLV9-49A0A0B4J1Y8 123 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.87□□□□□ -1.79
CD44-204ENST00000279452 DLEU1O43261 78 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 ERC2-IT1O76042 136 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 TSPAN13O95857 204 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 Q9BRP9 147 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 KRTAP9-2Q9BYQ4 174 aa3.87□□□□□ -1.79
CD44-204ENST00000279452 DMBT1Q9UGM3 2413 aaPredicted RBP3.87□□□□□ -1.79
CD44-204ENST00000279452 VPS13BQ7Z7G8 4022 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 H7C2G1 150 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 PCP4P48539 62 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 ELOF1P60002 83 aaKnown RBP3.86□□□□□ -1.79
CD44-204ENST00000279452 KRTAP13-2Q52LG2 175 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 C9orf153Q5TBE3 101 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 C3orf22Q8N5N4 141 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 SMIM11BQ8TCY0 68 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 RAB37Q96AX2 223 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 DHRS4-AS1Q9P1J3 65 aa3.86□□□□□ -1.79
CD44-204ENST00000279452 KRTAP9-6A0A140TA67 174 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 A0A1B0GWB2 263 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 VAMP3Q15836 100 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 Q1RN00 199 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 LINC00304Q8N9R0 145 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 ST20-AS1Q8NBB2 130 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 DEFB105AQ8NG35 78 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 HIGD1BQ9P298 99 aa3.85□□□□□ -1.79
CD44-204ENST00000279452 LRP1Q07954 4544 aaKnown RBP3.85□□□□□ -1.79
CD44-204ENST00000279452 SLC25A20O43772 301 aa3.84□□□□□ -1.79
CD44-204ENST00000279452 MOBPQ13875 183 aa3.84□□□□□ -1.79
CD44-204ENST00000279452 TAL2Q16559 108 aa3.84□□□□□ -1.79
CD44-204ENST00000279452 C2orf91Q6ZV80 131 aa3.84□□□□□ -1.79
CD44-204ENST00000279452 NHP2Q9NX24 153 aaKnown RBP3.84□□□□□ -1.79
CD44-204ENST00000279452 TRBV7-6A0A0J9YX20 115 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 PRR4Q16378 134 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 LINC00483Q53H64 154 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 CEND1Q8N111 149 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 Q8NBF4 154 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 UQCR10Q9UDW1 63 aa3.83□□□□□ -1.8
CD44-204ENST00000279452 HSD52Q0P140 79 aa3.82□□□□□ -1.8
CD44-204ENST00000279452 LAMTOR3Q9UHA4 124 aa3.82□□□□□ -1.8
CD44-204ENST00000279452 PKHD1L1Q86WI1 4243 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 A0A0B4J2C4 111 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 CFC1BP0CG36 223 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 CFC1P0CG37 223 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 FXYD2P54710 66 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 BVES-AS1Q5T3Y7 98 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 RETNLBQ9BQ08 111 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 PRO1933Q9H354 126 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 FAT3Q8TDW7 4589 aa3.81□□□□□ -1.8
CD44-204ENST00000279452 TEX49A0A1B0GTD5 131 aa3.8□□□□□ -1.8
CD44-204ENST00000279452 hADV29S1A0JD25 119 aa3.8□□□□□ -1.8
CD44-204ENST00000279452 SMIM6P0DI80 62 aa3.8□□□□□ -1.8
CD44-204ENST00000279452 SPAG11AQ6PDA7 123 aa3.8□□□□□ -1.8
CD44-204ENST00000279452 F8WEM9 126 aa3.79□□□□□ -1.8
CD44-204ENST00000279452 K7ERJ3 54 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms