RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LINC00588Q9Y4M8 146 aa9.34□□□□□ -0.91
CCDC88A-201ENST00000263630 ZNF861PO60384 105 aa9.33□□□□□ -0.92
CCDC88A-201ENST00000263630 POLQO75417 2590 aa9.32□□□□□ -0.92
CCDC88A-201ENST00000263630 IGLV1-50A0A075B6I6 118 aa9.32□□□□□ -0.92
CCDC88A-201ENST00000263630 ZNF575Q86XF7 245 aa9.32□□□□□ -0.92
CCDC88A-201ENST00000263630 MTORP42345 2549 aa9.31□□□□□ -0.92
CCDC88A-201ENST00000263630 FAM168BA1KXE4 195 aa9.31□□□□□ -0.92
CCDC88A-201ENST00000263630 IGF2RP11717 2491 aa9.3□□□□□ -0.92
CCDC88A-201ENST00000263630 WWC2-AS2Q96NR7 200 aa9.3□□□□□ -0.92
CCDC88A-201ENST00000263630 H7BZZ5 65 aa9.29□□□□□ -0.92
CCDC88A-201ENST00000263630 SPTBN4Q9H254 2564 aa9.29□□□□□ -0.92
CCDC88A-201ENST00000263630 CDSNQ15517 529 aa9.27□□□□□ -0.92
CCDC88A-201ENST00000263630 HRES1P13985 223 aa9.27□□□□□ -0.93
CCDC88A-201ENST00000263630 KRTAP10-9P60411 292 aa9.27□□□□□ -0.93
CCDC88A-201ENST00000263630 DMAC1Q96GE9 116 aa9.26□□□□□ -0.93
CCDC88A-201ENST00000263630 LINC00528Q8N1L1 170 aa9.26□□□□□ -0.93
CCDC88A-201ENST00000263630 CHD8Q9HCK8 2581 aa9.25□□□□□ -0.93
CCDC88A-201ENST00000263630 NCOR2Q9Y618 2525 aa9.25□□□□□ -0.93
CCDC88A-201ENST00000263630 C15orf56Q8N910 161 aa9.25□□□□□ -0.93
CCDC88A-201ENST00000263630 Q8NAQ8 132 aa9.24□□□□□ -0.93
CCDC88A-201ENST00000263630 A0A1B0GU33 70 aa9.21□□□□□ -0.93
CCDC88A-201ENST00000263630 PLA2G2DQ9UNK4 145 aa9.21□□□□□ -0.94
CCDC88A-201ENST00000263630 Q8N1X5 172 aa9.21□□□□□ -0.94
CCDC88A-201ENST00000263630 H3BS24 57 aa9.2□□□□□ -0.94
CCDC88A-201ENST00000263630 Q8N377 158 aa9.2□□□□□ -0.94
CCDC88A-201ENST00000263630 C9orf163Q8N9P6 203 aa9.18□□□□□ -0.94
CCDC88A-201ENST00000263630 LITAFQ99732 161 aa9.17□□□□□ -0.94
CCDC88A-201ENST00000263630 Q6ZSA8 131 aa9.17□□□□□ -0.94
CCDC88A-201ENST00000263630 USP24Q9UPU5 2620 aa9.16□□□□□ -0.94
CCDC88A-201ENST00000263630 Q75L30 129 aa9.14□□□□□ -0.95
CCDC88A-201ENST00000263630 M0R2T5 61 aa9.14□□□□□ -0.95
CCDC88A-201ENST00000263630 TLX1NBP0CAT3 122 aa9.14□□□□□ -0.95
CCDC88A-201ENST00000263630 IGLV7-43P04211 117 aa9.13□□□□□ -0.95
CCDC88A-201ENST00000263630 USP9YO00507 2555 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-201ENST00000263630 ANKRD11Q6UB99 2663 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-201ENST00000263630 BPTFQ12830 3046 aa9.1□□□□□ -0.95
CCDC88A-201ENST00000263630 WIPF1O43516 503 aa9.09□□□□□ -0.95
CCDC88A-201ENST00000263630 SPRR4Q96PI1 79 aa9.07□□□□□ -0.96
CCDC88A-201ENST00000263630 SPINK7P58062 85 aa9.07□□□□□ -0.96
CCDC88A-201ENST00000263630 A0A1W2PPR1 153 aa9.06□□□□□ -0.96
CCDC88A-201ENST00000263630 A0A087WTM6 91 aa9.05□□□□□ -0.96
CCDC88A-201ENST00000263630 PRR26Q8N8Z3 221 aa9.05□□□□□ -0.96
CCDC88A-201ENST00000263630 PRR34Q9NV39 138 aa9.05□□□□□ -0.96
CCDC88A-201ENST00000263630 COL4A2P08572 1712 aa9.05□□□□□ -0.96
CCDC88A-201ENST00000263630 IGLV7-46A0A075B6I9 117 aa9.04□□□□□ -0.96
CCDC88A-201ENST00000263630 PSORS1C2Q9UIG4 136 aa9.03□□□□□ -0.96
CCDC88A-201ENST00000263630 S4R3F8 94 aa9.03□□□□□ -0.96
CCDC88A-201ENST00000263630 CSAG1Q6PB30 78 aa9.02□□□□□ -0.97
CCDC88A-201ENST00000263630 FASNP49327 2511 aaKnown RBP9□□□□□ -0.97
CCDC88A-201ENST00000263630 SMR3BP02814 79 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-201ENST00000263630 KRTAP24-1Q3LI83 254 aa8.98□□□□□ -0.97
CCDC88A-201ENST00000263630 EPG5Q9HCE0 2579 aa8.98□□□□□ -0.97
CCDC88A-201ENST00000263630 ANAPC11Q9NYG5 84 aa8.97□□□□□ -0.97
CCDC88A-201ENST00000263630 CNBPP62633 177 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-201ENST00000263630 TNP2Q05952 138 aa8.96□□□□□ -0.97
CCDC88A-201ENST00000263630 OCR1Q9BZK8 76 aa8.96□□□□□ -0.98
CCDC88A-201ENST00000263630 R4GN34 69 aa8.95□□□□□ -0.98
CCDC88A-201ENST00000263630 LINC01558Q9Y6Z2 57 aa8.94□□□□□ -0.98
CCDC88A-201ENST00000263630 A0A0G2JQZ4 141 aa8.93□□□□□ -0.98
CCDC88A-201ENST00000263630 A0A1W2PNN7 141 aa8.93□□□□□ -0.98
CCDC88A-201ENST00000263630 H1FX-AS1Q4G0G2 97 aa8.92□□□□□ -0.98
CCDC88A-201ENST00000263630 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-201ENST00000263630 A0A1W2PNM2 257 aa8.91□□□□□ -0.98
CCDC88A-201ENST00000263630 ROMO1P60602 79 aa8.9□□□□□ -0.98
CCDC88A-201ENST00000263630 Q8N9P0 234 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-201ENST00000263630 LINC00612Q8N6U2 182 aa8.86□□□□□ -0.99
CCDC88A-201ENST00000263630 FAM229BQ4G0N7 80 aa8.84□□□□□ -0.99
CCDC88A-201ENST00000263630 ZCCHC13Q8WW36 166 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-201ENST00000263630 KRTAP16-1A8MUX0 517 aa8.84□□□□□ -0.99
CCDC88A-201ENST00000263630 K7EIL1 84 aa8.84□□□□□ -0.99
CCDC88A-201ENST00000263630 KLK9Q2XQG4 91 aa8.84□□□□□ -0.99
CCDC88A-201ENST00000263630 PLAC4Q8WY50 150 aa8.83□□□□□ -1
CCDC88A-201ENST00000263630 C19orf73Q9NVV2 129 aa8.83□□□□□ -1
CCDC88A-201ENST00000263630 RPL37P61927 97 aaKnown RBP8.82□□□□□ -1
CCDC88A-201ENST00000263630 EIF4EBP3O60516 100 aaPredicted RBP8.8□□□□□ -1
CCDC88A-201ENST00000263630 PRAC1Q96KF2 57 aa8.8□□□□□ -1
CCDC88A-201ENST00000263630 KRTAP10-11P60412 298 aa8.8□□□□□ -1
CCDC88A-201ENST00000263630 ASB16-AS1Q495Z4 193 aa8.78□□□□□ -1
CCDC88A-201ENST00000263630 GIG44P09565 113 aaPredicted RBP8.78□□□□□ -1
CCDC88A-201ENST00000263630 PRRC2CQ9Y520 2896 aaKnown RBP8.77□□□□□ -1.01
CCDC88A-201ENST00000263630 SEC61BP60468 96 aaKnown RBP8.76□□□□□ -1.01
CCDC88A-201ENST00000263630 C10orf142B7Z368 130 aa8.74□□□□□ -1.01
CCDC88A-201ENST00000263630 Q5VV11 94 aa8.73□□□□□ -1.01
CCDC88A-201ENST00000263630 DMBT1Q9UGM3 2413 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-201ENST00000263630 M0QZ58 72 aa8.67□□□□□ -1.02
CCDC88A-201ENST00000263630 Q5XG85 94 aa8.66□□□□□ -1.02
CCDC88A-201ENST00000263630 Q5W150 140 aa8.66□□□□□ -1.02
CCDC88A-201ENST00000263630 MMP24-AS1A0A0U1RRL7 71 aa8.65□□□□□ -1.03
CCDC88A-201ENST00000263630 CEP295Q9C0D2 2601 aa8.61□□□□□ -1.03
CCDC88A-201ENST00000263630 MGAM2Q2M2H8 2515 aa8.61□□□□□ -1.03
CCDC88A-201ENST00000263630 CASC10Q5T4H9 136 aa8.6□□□□□ -1.03
CCDC88A-201ENST00000263630 FP248Q71RG6 208 aaPredicted RBP8.6□□□□□ -1.03
CCDC88A-201ENST00000263630 HECTD1Q9ULT8 2610 aa8.59□□□□□ -1.03
CCDC88A-201ENST00000263630 CFAP46Q8IYW2 2715 aa8.58□□□□□ -1.04
CCDC88A-201ENST00000263630 NBEAL1Q6ZS30 2694 aa8.56□□□□□ -1.04
CCDC88A-201ENST00000263630 CENPFP49454 3210 aa8.55□□□□□ -1.04
CCDC88A-201ENST00000263630 AKAP13Q12802 2813 aa8.55□□□□□ -1.04
CCDC88A-201ENST00000263630 C20orf166-AS1Q96NR2 134 aa8.55□□□□□ -1.04
CCDC88A-201ENST00000263630 CENPEQ02224 2701 aa8.53□□□□□ -1.04
CCDC88A-201ENST00000263630 PLAC8Q9NZF1 115 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms