RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 Q1T7F1 81 aa9.9□□□□□ -0.82
PTPRA-201ENST00000216877 REG3AQ06141 175 aa9.9□□□□□ -0.83
PTPRA-201ENST00000216877 INAFM1C9JVW0 142 aa9.89□□□□□ -0.83
PTPRA-201ENST00000216877 COX17Q14061 63 aa9.89□□□□□ -0.83
PTPRA-201ENST00000216877 C16orf74Q96GX8 76 aa9.89□□□□□ -0.83
PTPRA-201ENST00000216877 WFDC13Q8IUB5 93 aa9.87□□□□□ -0.83
PTPRA-201ENST00000216877 LINC00612Q8N6U2 182 aa9.87□□□□□ -0.83
PTPRA-201ENST00000216877 HCG22E2RYF7 251 aa9.87□□□□□ -0.83
PTPRA-201ENST00000216877 DEFB4AO15263 64 aa9.87□□□□□ -0.83
PTPRA-201ENST00000216877 KIAA0087Q14695 138 aa9.87□□□□□ -0.83
PTPRA-201ENST00000216877 UBE2AP49459 152 aa9.86□□□□□ -0.83
PTPRA-201ENST00000216877 ST20-AS1Q8NBB2 130 aa9.85□□□□□ -0.83
PTPRA-201ENST00000216877 Q6YL49 198 aa9.85□□□□□ -0.83
PTPRA-201ENST00000216877 KTN1-AS1Q86SY8 53 aa9.85□□□□□ -0.83
PTPRA-201ENST00000216877 LINC00208Q96KT6 92 aa9.85□□□□□ -0.83
PTPRA-201ENST00000216877 NF1P21359 2839 aa9.85□□□□□ -0.83
PTPRA-201ENST00000216877 ETDCA0A1B0GVM5 59 aa9.84□□□□□ -0.83
PTPRA-201ENST00000216877 PSCAO43653 123 aa9.84□□□□□ -0.83
PTPRA-201ENST00000216877 H3BQ85 93 aa9.84□□□□□ -0.83
PTPRA-201ENST00000216877 NIPBLQ6KC79 2804 aaeCLIP9.84□□□□□ -0.83
PTPRA-201ENST00000216877 SETXQ7Z333 2677 aaKnown RBP9.84□□□□□ -0.83
PTPRA-201ENST00000216877 WFDC10BQ8IUB3 73 aa9.84□□□□□ -0.83
PTPRA-201ENST00000216877 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.83□□□□□ -0.84
PTPRA-201ENST00000216877 A0A0J9YWU9 116 aa9.82□□□□□ -0.84
PTPRA-201ENST00000216877 IGLV6-57P01721 117 aa9.82□□□□□ -0.84
PTPRA-201ENST00000216877 C4orf48Q5BLP8 95 aa9.82□□□□□ -0.84
PTPRA-201ENST00000216877 MP68P56378 58 aa9.82□□□□□ -0.84
PTPRA-201ENST00000216877 C11orf45Q8TAV5 145 aa9.81□□□□□ -0.84
PTPRA-201ENST00000216877 ZNF702PQ9H963 129 aa9.81□□□□□ -0.84
PTPRA-201ENST00000216877 PDZD2O15018 2839 aa9.8□□□□□ -0.84
PTPRA-201ENST00000216877 C16orf90A8MZG2 172 aa9.8□□□□□ -0.84
PTPRA-201ENST00000216877 STAB1Q9NY15 2570 aa9.8□□□□□ -0.84
PTPRA-201ENST00000216877 NBEAL1Q6ZS30 2694 aa9.79□□□□□ -0.84
PTPRA-201ENST00000216877 Q5VV11 94 aa9.79□□□□□ -0.84
PTPRA-201ENST00000216877 B9D2Q9BPU9 175 aa9.79□□□□□ -0.84
PTPRA-201ENST00000216877 LYRM9A8MSI8 78 aa9.79□□□□□ -0.84
PTPRA-201ENST00000216877 M0R378 163 aa9.78□□□□□ -0.84
PTPRA-201ENST00000216877 APOC4P55056 127 aa9.78□□□□□ -0.84
PTPRA-201ENST00000216877 CAMK2N2Q96S95 79 aa9.78□□□□□ -0.84
PTPRA-201ENST00000216877 NOTCH1P46531 2555 aa9.78□□□□□ -0.84
PTPRA-201ENST00000216877 COL6A5A8TX70 2615 aa9.78□□□□□ -0.84
PTPRA-201ENST00000216877 LINC00588Q9Y4M8 146 aa9.77□□□□□ -0.85
PTPRA-201ENST00000216877 K7EQZ3 153 aa9.77□□□□□ -0.85
PTPRA-201ENST00000216877 ELOF1P60002 83 aaKnown RBP9.76□□□□□ -0.85
PTPRA-201ENST00000216877 KPRPQ5T749 579 aaPredicted RBP9.76□□□□□ -0.85
PTPRA-201ENST00000216877 A0A1B0GUV1 79 aa9.76□□□□□ -0.85
PTPRA-201ENST00000216877 PRO0255Q9UI72 69 aa9.75□□□□□ -0.85
PTPRA-201ENST00000216877 FSHBP01225 129 aa9.75□□□□□ -0.85
PTPRA-201ENST00000216877 C4orf3Q8WVX3 66 aa9.73□□□□□ -0.85
PTPRA-201ENST00000216877 MXRA5Q9NR99 2828 aa9.73□□□□□ -0.85
PTPRA-201ENST00000216877 C6orf48Q9UBA6 75 aa9.73□□□□□ -0.85
PTPRA-201ENST00000216877 ANK2Q01484 3957 aa9.73□□□□□ -0.85
PTPRA-201ENST00000216877 C1orf137Q5JT78 98 aa9.72□□□□□ -0.85
PTPRA-201ENST00000216877 NDUFB1O75438 58 aa9.72□□□□□ -0.85
PTPRA-201ENST00000216877 A0A0G2JQZ4 141 aa9.72□□□□□ -0.85
PTPRA-201ENST00000216877 A0A1W2PNN7 141 aa9.72□□□□□ -0.85
PTPRA-201ENST00000216877 NKAPP1Q8N9T2 125 aa9.72□□□□□ -0.85
PTPRA-201ENST00000216877 GIG44P09565 113 aaPredicted RBP9.71□□□□□ -0.85
PTPRA-201ENST00000216877 LIMD2Q9BT23 127 aa9.7□□□□□ -0.86
PTPRA-201ENST00000216877 DNAH3Q8TD57 4116 aa9.7□□□□□ -0.86
PTPRA-201ENST00000216877 RPL37AP8A6NKH3 93 aa9.69□□□□□ -0.86
PTPRA-201ENST00000216877 NDUFS5O43920 106 aa9.69□□□□□ -0.86
PTPRA-201ENST00000216877 DEFB135Q30KP9 77 aa9.69□□□□□ -0.86
PTPRA-201ENST00000216877 Q8N9P0 234 aaPredicted RBP9.67□□□□□ -0.86
PTPRA-201ENST00000216877 ATP11AUNQ6ZP68 121 aa9.67□□□□□ -0.86
PTPRA-201ENST00000216877 LCA10Q71F78 164 aa9.67□□□□□ -0.86
PTPRA-201ENST00000216877 LINC00528Q8N1L1 170 aa9.67□□□□□ -0.86
PTPRA-201ENST00000216877 A0A1W2PNM2 257 aa9.66□□□□□ -0.86
PTPRA-201ENST00000216877 SPAG11AQ6PDA7 123 aa9.66□□□□□ -0.86
PTPRA-201ENST00000216877 Q8N377 158 aa9.65□□□□□ -0.86
PTPRA-201ENST00000216877 IGHV4-30-4P0DP06 118 aa9.65□□□□□ -0.87
PTPRA-201ENST00000216877 PCOTHQ58A44 107 aa9.64□□□□□ -0.87
PTPRA-201ENST00000216877 H0Y9P7 68 aa9.64□□□□□ -0.87
PTPRA-201ENST00000216877 RPL37AP61513 92 aaKnown RBP9.64□□□□□ -0.87
PTPRA-201ENST00000216877 CYP4F30PQ9H0H9 118 aa9.64□□□□□ -0.87
PTPRA-201ENST00000216877 H3BS24 57 aa9.63□□□□□ -0.87
PTPRA-201ENST00000216877 VPREB1P12018 145 aa9.63□□□□□ -0.87
PTPRA-201ENST00000216877 DSCR10P59022 87 aa9.63□□□□□ -0.87
PTPRA-201ENST00000216877 BAHCC1Q9P281 2608 aa9.62□□□□□ -0.87
PTPRA-201ENST00000216877 ZCCHC13Q8WW36 166 aaKnown RBP9.61□□□□□ -0.87
PTPRA-201ENST00000216877 C7orf65Q6ZTY9 151 aa9.6□□□□□ -0.87
PTPRA-201ENST00000216877 PRAC1Q96KF2 57 aa9.6□□□□□ -0.87
PTPRA-201ENST00000216877 OXLD1Q5BKU9 147 aa9.59□□□□□ -0.87
PTPRA-201ENST00000216877 Q8NBF4 154 aa9.59□□□□□ -0.87
PTPRA-201ENST00000216877 CMC4P56277 68 aaPredicted RBP9.57□□□□□ -0.88
PTPRA-201ENST00000216877 CSNK1G2-AS1Q8NCQ2 148 aa9.57□□□□□ -0.88
PTPRA-201ENST00000216877 MDFIQ99750 246 aa9.57□□□□□ -0.88
PTPRA-201ENST00000216877 A0A087WSZ3 146 aa9.56□□□□□ -0.88
PTPRA-201ENST00000216877 COA5Q86WW8 74 aa9.56□□□□□ -0.88
PTPRA-201ENST00000216877 C8orf87E5RJ46 101 aa9.56□□□□□ -0.88
PTPRA-201ENST00000216877 C7orf33Q8WU49 177 aa9.56□□□□□ -0.88
PTPRA-201ENST00000216877 IGKV2D-24A0A075B6R9 120 aa9.55□□□□□ -0.88
PTPRA-201ENST00000216877 A0A096LNI7 61 aa9.54□□□□□ -0.88
PTPRA-201ENST00000216877 LOC101927531A0A1B0GV80 90 aa9.54□□□□□ -0.88
PTPRA-201ENST00000216877 HIVEP1P15822 2718 aa9.53□□□□□ -0.88
PTPRA-201ENST00000216877 A6NN06 94 aa9.53□□□□□ -0.88
PTPRA-201ENST00000216877 CASC2Q6XLA1 102 aa9.53□□□□□ -0.88
PTPRA-201ENST00000216877 MOBPQ13875 183 aa9.52□□□□□ -0.89
PTPRA-201ENST00000216877 EGFEM1PQ0D2K5 195 aa9.52□□□□□ -0.89
PTPRA-201ENST00000216877 H0Y9J4 135 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms