RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PDE6GP18545 87 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 RPL18AQ02543 176 aaKnown RBP2.79□□□□□ -1.96
SCN1A-214ENST00000637038 C11orf68Q9H3H3 251 aaKnown RBP2.79□□□□□ -1.96
SCN1A-214ENST00000637038 APOC4P55056 127 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 FHL2Q14192 279 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 C14orf132Q9NPU4 83 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 hADV29S1A0JD25 119 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 LINC00337Q8N6G1 96 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 MAP1AP78559 2803 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-214ENST00000637038 CD164L2Q6UWJ8 174 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 HIST1H4AP62805 103 aaKnown RBP2.78□□□□□ -1.96
SCN1A-214ENST00000637038 LINC01006Q8NI28 216 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 LOC100131303A0A0U1RQF7 123 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 CCKP06307 115 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 DAD1P61803 113 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 SERP2Q8N6R1 65 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 IGLV4-60A0A075B6I1 120 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 A0A087WYN8 130 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 IGKV3D-7A0A0C4DH55 119 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 TMEM258P61165 79 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 C11orf45Q8TAV5 145 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 FAM218AQ96MZ4 157 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 LAMTOR3Q9UHA4 124 aa2.78□□□□□ -1.96
SCN1A-214ENST00000637038 ANGP03950 147 aaKnown RBP2.77□□□□□ -1.97
SCN1A-214ENST00000637038 APCP25054 2843 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 IGKV2-28A0A075B6P5 120 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 IGKV2D-28P01615 120 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 DPH3Q96FX2 82 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 DSCR8Q96T75 97 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 NF1P21359 2839 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 TRBV10-3A0A0K0K1G6 114 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 CRYGAP11844 174 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 CHCHD10Q8WYQ3 142 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-214ENST00000637038 C22orf24Q9Y442 160 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 TEX15Q9BXT5 2789 aa2.77□□□□□ -1.97
SCN1A-214ENST00000637038 NCR3O14931 201 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 RBM3P98179 157 aaKnown RBP2.76□□□□□ -1.97
SCN1A-214ENST00000637038 Q8N814 137 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 USP17L23D6RBM5 183 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 REG3AQ06141 175 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 SPAG11BQ08648 103 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 SMCR5Q8TEV8 140 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 OBSCN-AS1Q96MR7 158 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 PLAC8L1A1L4L8 177 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 BCE1O60756 84 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 CD164Q04900 197 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 CLPSL2Q6UWE3 100 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 NDUFC2-KCTD14E9PQ53 114 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 CDK2AP2O75956 126 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00269Q8N2A0 174 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00612Q8N6U2 182 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 CSNK1G2-AS1Q8NCQ2 148 aa2.76□□□□□ -1.97
SCN1A-214ENST00000637038 DNAH7Q8WXX0 4024 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 DYNC2H1Q8NCM8 4307 aaKnown RBP2.75□□□□□ -1.97
SCN1A-214ENST00000637038 LY6G6CO95867 125 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 GIG44P09565 113 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-214ENST00000637038 SPART-AS1P0CW21 52 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 DIRC1Q969H9 104 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00167Q96N53 147 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 WFDC10AQ9H1F0 79 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00846Q9NV44 126 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 DNAH9Q9NYC9 4486 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 SLPIP03973 132 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 MIFP14174 115 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 EPM2AB3EWF7 344 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 K7EIL1 84 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 C6orf99Q4VX62 202 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 LELP1Q5T871 98 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 CYSTM1Q9H1C7 97 aa2.75□□□□□ -1.97
SCN1A-214ENST00000637038 IGHV4-28A0A0C4DH34 117 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 HTN3P15516 51 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 C19orf73Q9NVV2 129 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 VWFP04275 2813 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 SORL1Q92673 2214 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 A0A096LPF7 62 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00476Q8WZB0 136 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 UPK3BQ9BT76 320 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 ESM1Q9NQ30 184 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 ACANP16112 2415 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-214ENST00000637038 LINC00575Q6W349 94 aa2.74□□□□□ -1.97
SCN1A-214ENST00000637038 IGLV10-54A0A075B6I4 117 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 COX7BP24311 80 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 HIVEP1P15822 2718 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 LOC110117498A0A087WWA1 95 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 HAMPP81172 84 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 CENPEQ02224 2701 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 STAB1Q9NY15 2570 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 TRAV23DV6A0A075B6W5 121 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 TRBV7-6A0A0J9YX20 115 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 DEFB135Q30KP9 77 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 ENHOQ6UWT2 76 aa2.73□□□□□ -1.97
SCN1A-214ENST00000637038 TRAV7A0A075B6U4 112 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 PLA2G1BP04054 148 aaKnown RBP2.72□□□□□ -1.97
SCN1A-214ENST00000637038 UBE2DNLQ8IWF7 75 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 X6R8D5 127 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 GVQW2A0A096LPI5 108 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-214ENST00000637038 A0A0J9YWU9 116 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 NDUFC1O43677 76 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 IGHV4-30-4P0DP06 118 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms