RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 APLNQ9ULZ1 77 aa3.89□□□□□ -1.79
SCN1A-209ENST00000635750 LINC00167Q96N53 147 aa3.88□□□□□ -1.79
SCN1A-209ENST00000635750 H3BNG1 76 aa3.88□□□□□ -1.79
SCN1A-209ENST00000635750 COL4A3Q01955 1670 aa3.88□□□□□ -1.79
SCN1A-209ENST00000635750 NBDYA0A0U1RRE5 68 aa3.88□□□□□ -1.79
SCN1A-209ENST00000635750 PHF5AQ7RTV0 110 aaKnown RBP3.88□□□□□ -1.79
SCN1A-209ENST00000635750 ADAMTSL4-AS1Q5T5F5 129 aa3.87□□□□□ -1.79
SCN1A-209ENST00000635750 EPM2AB3EWF7 344 aa3.87□□□□□ -1.79
SCN1A-209ENST00000635750 LINC00315P59091 139 aa3.87□□□□□ -1.79
SCN1A-209ENST00000635750 NAV2Q8IVL1 2488 aa3.86□□□□□ -1.79
SCN1A-209ENST00000635750 GAS8-AS1O95177 125 aa3.86□□□□□ -1.79
SCN1A-209ENST00000635750 BCE1O60756 84 aa3.86□□□□□ -1.79
SCN1A-209ENST00000635750 ZNF295-AS1Q8N0V1 137 aa3.86□□□□□ -1.79
SCN1A-209ENST00000635750 LOC101927531A0A1B0GV80 90 aa3.86□□□□□ -1.79
SCN1A-209ENST00000635750 Q6ZSN1 163 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 SPATA3Q8NHX4 192 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 MUC22E2RYF6 1773 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-209ENST00000635750 CDSNQ15517 529 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 C11orf72Q8NBR9 251 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 LINC00476Q8WZB0 136 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 LINC00846Q9NV44 126 aa3.85□□□□□ -1.79
SCN1A-209ENST00000635750 Q6ZPA2 131 aa3.84□□□□□ -1.79
SCN1A-209ENST00000635750 PCSK5Q92824 1860 aa3.84□□□□□ -1.79
SCN1A-209ENST00000635750 LINC00304Q8N9R0 145 aa3.84□□□□□ -1.79
SCN1A-209ENST00000635750 TSPEAR-AS2P59090 65 aa3.84□□□□□ -1.79
SCN1A-209ENST00000635750 FAM19A4Q96LR4 140 aa3.84□□□□□ -1.8
SCN1A-209ENST00000635750 Q6ZRX8 168 aa3.84□□□□□ -1.8
SCN1A-209ENST00000635750 LINC01600Q96MT4 127 aa3.84□□□□□ -1.8
SCN1A-209ENST00000635750 TLN1Q9Y490 2541 aaKnown RBP3.83□□□□□ -1.8
SCN1A-209ENST00000635750 IGLV5-37A0A075B6J1 123 aa3.83□□□□□ -1.8
SCN1A-209ENST00000635750 ELOF1P60002 83 aaKnown RBP3.83□□□□□ -1.8
SCN1A-209ENST00000635750 UQCR11O14957 56 aa3.82□□□□□ -1.8
SCN1A-209ENST00000635750 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
SCN1A-209ENST00000635750 ST20-AS1Q8NBB2 130 aa3.82□□□□□ -1.8
SCN1A-209ENST00000635750 PIEZO2Q9H5I5 2752 aa3.82□□□□□ -1.8
SCN1A-209ENST00000635750 TLN2Q9Y4G6 2542 aa3.82□□□□□ -1.8
SCN1A-209ENST00000635750 PRO0628Q9UI54 55 aa3.81□□□□□ -1.8
SCN1A-209ENST00000635750 A8MWP4 228 aa3.81□□□□□ -1.8
SCN1A-209ENST00000635750 MRPL34Q9BQ48 92 aaKnown RBP3.81□□□□□ -1.8
SCN1A-209ENST00000635750 ANKRD17O75179 2603 aaKnown RBP3.81□□□□□ -1.8
SCN1A-209ENST00000635750 C9orf129Q5T035 196 aaKnown RBP3.81□□□□□ -1.8
SCN1A-209ENST00000635750 ABCA12Q86UK0 2595 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 COX8CQ7Z4L0 72 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 PRO3102Q9H379 93 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 C9orf92A6NGG3 77 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 CRIP3Q6Q6R5 217 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 LINC00588Q9Y4M8 146 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 GVQW2A0A096LPI5 108 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-209ENST00000635750 TRBV7-4A0A0J9YYF1 115 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 LINC01554Q52M75 96 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 JMJD1CQ15652 2540 aa3.8□□□□□ -1.8
SCN1A-209ENST00000635750 IGHV3OR16-9A0A0B4J2B5 98 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 IGLV6-57P01721 117 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 LOC110117498A0A087WWA1 95 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 Q6ZQT0 140 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 LINC00336Q6ZUF6 198 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 OBSCN-AS1Q96MR7 158 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 PIEZO1Q92508 2521 aa3.79□□□□□ -1.8
SCN1A-209ENST00000635750 IGLV5-39A0A0G2JS06 123 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 DNAH10OSP0CZ25 163 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 LINC00483Q53H64 154 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 KRTAP24-1Q3LI83 254 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 M0R2T5 61 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 MIR22HGQ0VDD5 57 aa3.78□□□□□ -1.8
SCN1A-209ENST00000635750 FLG2Q5D862 2391 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-209ENST00000635750 CYP4F30PQ9H0H9 118 aa3.77□□□□□ -1.81
SCN1A-209ENST00000635750 DSCR10P59022 87 aa3.76□□□□□ -1.81
SCN1A-209ENST00000635750 CDC42SE1Q9NRR8 79 aa3.76□□□□□ -1.81
SCN1A-209ENST00000635750 USP9XQ93008 2570 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-209ENST00000635750 COA5Q86WW8 74 aa3.76□□□□□ -1.81
SCN1A-209ENST00000635750 K7EQZ3 153 aa3.76□□□□□ -1.81
SCN1A-209ENST00000635750 ZNF861PO60384 105 aa3.76□□□□□ -1.81
SCN1A-209ENST00000635750 CSNK1G2-AS1Q8NCQ2 148 aa3.75□□□□□ -1.81
SCN1A-209ENST00000635750 Q8NAQ8 132 aa3.75□□□□□ -1.81
SCN1A-209ENST00000635750 SMR3BP02814 79 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-209ENST00000635750 IGF2RP11717 2491 aa3.74□□□□□ -1.81
SCN1A-209ENST00000635750 A0A1W2PPR1 153 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 RPS28P62857 69 aaKnown RBP3.73□□□□□ -1.81
SCN1A-209ENST00000635750 FAM168BA1KXE4 195 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 URB1-AS1Q96HZ7 61 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 A0A0D9SG42 100 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 A0A1B0GVX0 72 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 Q6ZSA8 131 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 C9orf163Q8N9P6 203 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 IGLV5-45A0A087WSX0 123 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 CAMK2N1Q7Z7J9 78 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 TM2D3Q9BRN9 247 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 LINC01546A6NGU7 62 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 C4orf26Q17RF5 130 aa3.73□□□□□ -1.81
SCN1A-209ENST00000635750 C8orf17Q9NRJ1 99 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 ERC2-IT1O76042 136 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 COL4A2P08572 1712 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 WDR87Q6ZQQ6 2873 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 CR1P17927 2039 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 ZNF462Q96JM2 2506 aa3.72□□□□□ -1.81
SCN1A-209ENST00000635750 ZNF575Q86XF7 245 aa3.71□□□□□ -1.81
SCN1A-209ENST00000635750 IGLV5-48A0A075B6I7 105 aa3.71□□□□□ -1.82
SCN1A-209ENST00000635750 HRES1P13985 223 aa3.71□□□□□ -1.82
SCN1A-209ENST00000635750 IGLV1-50A0A075B6I6 118 aa3.71□□□□□ -1.82
SCN1A-209ENST00000635750 PRR15Q8IV56 129 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms