RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 ATXN8Q156A1 80 aa11.68□□□□□ -0.54
SHKBP1-224ENST00000600718 C10orf25Q5T742 122 aa11.68□□□□□ -0.54
SHKBP1-224ENST00000600718 RPL13AP40429 203 aaKnown RBP11.67□□□□□ -0.54
SHKBP1-224ENST00000600718 Q6Q795 121 aa11.67□□□□□ -0.54
SHKBP1-224ENST00000600718 SOSTDC1Q6X4U4 206 aa11.67□□□□□ -0.54
SHKBP1-224ENST00000600718 CAMK2N2Q96S95 79 aa11.66□□□□□ -0.54
SHKBP1-224ENST00000600718 SNCGO76070 127 aa11.65□□□□□ -0.54
SHKBP1-224ENST00000600718 LINC01620Q4KN68 170 aa11.65□□□□□ -0.54
SHKBP1-224ENST00000600718 CASC10Q5T4H9 136 aa11.65□□□□□ -0.54
SHKBP1-224ENST00000600718 DNAH7Q8WXX0 4024 aa11.65□□□□□ -0.54
SHKBP1-224ENST00000600718 TRBV30A0A0K0K1B3 111 aa11.65□□□□□ -0.55
SHKBP1-224ENST00000600718 USP17L23D6RBM5 183 aa11.65□□□□□ -0.55
SHKBP1-224ENST00000600718 GAGE2BQ13066 116 aa11.65□□□□□ -0.55
SHKBP1-224ENST00000600718 GAGE2EQ4V326 116 aa11.65□□□□□ -0.55
SHKBP1-224ENST00000600718 GAGE2DQ9UEU5 116 aa11.65□□□□□ -0.55
SHKBP1-224ENST00000600718 C9orf116Q5BN46 136 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-224ENST00000600718 CSMD3Q7Z407 3707 aa11.63□□□□□ -0.55
SHKBP1-224ENST00000600718 TRBV10-2A0A0K0K1G8 114 aa11.63□□□□□ -0.55
SHKBP1-224ENST00000600718 C6orf48Q9UBA6 75 aa11.63□□□□□ -0.55
SHKBP1-224ENST00000600718 Q1RN00 199 aa11.62□□□□□ -0.55
SHKBP1-224ENST00000600718 PSCAO43653 123 aa11.61□□□□□ -0.55
SHKBP1-224ENST00000600718 NDUFV3P56181 108 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-224ENST00000600718 Q6ZRU5 148 aa11.61□□□□□ -0.55
SHKBP1-224ENST00000600718 C3orf84H3BNL1 204 aa11.61□□□□□ -0.55
SHKBP1-224ENST00000600718 SYCNQ0VAF6 134 aa11.61□□□□□ -0.55
SHKBP1-224ENST00000600718 H7C2G1 150 aa11.6□□□□□ -0.55
SHKBP1-224ENST00000600718 SND1-IT1Q9HBX3 110 aa11.59□□□□□ -0.55
SHKBP1-224ENST00000600718 SS18L2Q9UHA2 77 aa11.59□□□□□ -0.55
SHKBP1-224ENST00000600718 TRIAP1O43715 76 aa11.58□□□□□ -0.56
SHKBP1-224ENST00000600718 H3BT86 120 aa11.58□□□□□ -0.56
SHKBP1-224ENST00000600718 LECT2O14960 151 aa11.57□□□□□ -0.56
SHKBP1-224ENST00000600718 B5MCH6 92 aa11.56□□□□□ -0.56
SHKBP1-224ENST00000600718 PLECQ15149 4684 aaKnown RBP11.56□□□□□ -0.56
SHKBP1-224ENST00000600718 TEX49A0A1B0GTD5 131 aa11.56□□□□□ -0.56
SHKBP1-224ENST00000600718 M0R2N4 97 aa11.56□□□□□ -0.56
SHKBP1-224ENST00000600718 COX6CP09669 75 aa11.56□□□□□ -0.56
SHKBP1-224ENST00000600718 STARD9Q9P2P6 4700 aa11.55□□□□□ -0.56
SHKBP1-224ENST00000600718 FAM240AA0A1B0GVK7 77 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 SLPIP03973 132 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 C14orf177Q52M58 125 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 Q6ZR54 194 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 DNAH1Q9P2D7 4330 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 NDUFC2-KCTD14E9PQ53 114 aa11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 Q6ZRN7 208 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-224ENST00000600718 TRAV13-2A0A0B4J235 113 aa11.53□□□□□ -0.56
SHKBP1-224ENST00000600718 NDUFC2O95298 119 aa11.53□□□□□ -0.56
SHKBP1-224ENST00000600718 LY6G6CO95867 125 aa11.53□□□□□ -0.56
SHKBP1-224ENST00000600718 IGKV2-28A0A075B6P5 120 aa11.52□□□□□ -0.57
SHKBP1-224ENST00000600718 IGKV2D-28P01615 120 aa11.52□□□□□ -0.57
SHKBP1-224ENST00000600718 LINC00476Q8WZB0 136 aa11.52□□□□□ -0.57
SHKBP1-224ENST00000600718 LST1O00453 97 aa11.5□□□□□ -0.57
SHKBP1-224ENST00000600718 TLX1NBP0CAT3 122 aa11.5□□□□□ -0.57
SHKBP1-224ENST00000600718 CCDC179H3BU77 68 aa11.5□□□□□ -0.57
SHKBP1-224ENST00000600718 LYSTQ99698 3801 aa11.5□□□□□ -0.57
SHKBP1-224ENST00000600718 TENM2Q9NT68 2774 aa11.49□□□□□ -0.57
SHKBP1-224ENST00000600718 LRCOL1A6NCL2 159 aa11.49□□□□□ -0.57
SHKBP1-224ENST00000600718 CNBPP62633 177 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-224ENST00000600718 LINC00337Q8N6G1 96 aa11.48□□□□□ -0.57
SHKBP1-224ENST00000600718 Q6ZRP5 223 aa11.48□□□□□ -0.57
SHKBP1-224ENST00000600718 XAGE1AQ9HD64 81 aa11.48□□□□□ -0.57
SHKBP1-224ENST00000600718 VPS13DQ5THJ4 4388 aa11.47□□□□□ -0.57
SHKBP1-224ENST00000600718 TRBV7-7A0A0K0K1E9 115 aa11.46□□□□□ -0.58
SHKBP1-224ENST00000600718 PRR3P79522 188 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-224ENST00000600718 Q8NDZ9 215 aa11.45□□□□□ -0.58
SHKBP1-224ENST00000600718 TGP01266 2768 aa11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 LOC107984640A0A0U1RRK4 108 aa11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 RPL18AQ02543 176 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 C1orf134Q5TEV5 83 aa11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 OR13C6PQ8NH95 151 aa11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 CLEC2BQ92478 149 aa11.44□□□□□ -0.58
SHKBP1-224ENST00000600718 ACYP1P07311 99 aa11.43□□□□□ -0.58
SHKBP1-224ENST00000600718 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 NCR3O14931 201 aa11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 IMUPQ9GZP8 106 aa11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 TMEM126AQ9H061 195 aa11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 RPL28P46779 137 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 C9orf129Q5T035 196 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-224ENST00000600718 A0A087WTM6 91 aa11.4□□□□□ -0.58
SHKBP1-224ENST00000600718 VPREB1P12018 145 aa11.4□□□□□ -0.58
SHKBP1-224ENST00000600718 Q8N814 137 aa11.39□□□□□ -0.59
SHKBP1-224ENST00000600718 S100A7L2Q5SY68 101 aa11.39□□□□□ -0.59
SHKBP1-224ENST00000600718 SMIM20Q8N5G0 67 aa11.39□□□□□ -0.59
SHKBP1-224ENST00000600718 SMIM11BQ8TCY0 68 aa11.39□□□□□ -0.59
SHKBP1-224ENST00000600718 PLA2G2DQ9UNK4 145 aa11.39□□□□□ -0.59
SHKBP1-224ENST00000600718 M0R378 163 aa11.37□□□□□ -0.59
SHKBP1-224ENST00000600718 C9orf163Q8N9P6 203 aa11.37□□□□□ -0.59
SHKBP1-224ENST00000600718 PKIGQ9Y2B9 76 aa11.37□□□□□ -0.59
SHKBP1-224ENST00000600718 IGLV6-57P01721 117 aa11.36□□□□□ -0.59
SHKBP1-224ENST00000600718 C16orf90A8MZG2 172 aa11.34□□□□□ -0.59
SHKBP1-224ENST00000600718 IGLV5-37A0A075B6J1 123 aa11.32□□□□□ -0.6
SHKBP1-224ENST00000600718 TRACP01848 142 aa11.32□□□□□ -0.6
SHKBP1-224ENST00000600718 SERTAD4-AS1Q5TG53 156 aa11.32□□□□□ -0.6
SHKBP1-224ENST00000600718 LINC00643Q86TS7 51 aa11.32□□□□□ -0.6
SHKBP1-224ENST00000600718 NKAPP1Q8N9T2 125 aa11.32□□□□□ -0.6
SHKBP1-224ENST00000600718 DNAH10Q8IVF4 4471 aa11.31□□□□□ -0.6
SHKBP1-224ENST00000600718 A0A096LNI7 61 aa11.31□□□□□ -0.6
SHKBP1-224ENST00000600718 TRBV10-3A0A0K0K1G6 114 aa11.31□□□□□ -0.6
SHKBP1-224ENST00000600718 H0YGX0 51 aa11.31□□□□□ -0.6
SHKBP1-224ENST00000600718 SDIM1Q6ZPB5 146 aa11.31□□□□□ -0.6
SHKBP1-224ENST00000600718 FAM236AA0A1B0GUQ0 79 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms