RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 NMUP48645 174 aa6.45□□□□□ -1.38
LIG1-213ENST00000596672 KIAA0087Q14695 138 aa6.45□□□□□ -1.38
LIG1-213ENST00000596672 C7orf33Q8WU49 177 aa6.45□□□□□ -1.38
LIG1-213ENST00000596672 C2orf48Q96LS8 159 aa6.45□□□□□ -1.38
LIG1-213ENST00000596672 IGKV2D-26A0A0A0MRZ7 120 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 TINCRA0A1B0GVN0 87 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 FAM168BA1KXE4 195 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 SMIM13P0DJ93 91 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 ZNF22P17026 224 aaPredicted RBP6.44□□□□□ -1.38
LIG1-213ENST00000596672 SPAG11BQ08648 103 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 C9orf116Q5BN46 136 aaPredicted RBP6.44□□□□□ -1.38
LIG1-213ENST00000596672 UNQ6190/PRO20217Q6UXQ8 127 aa6.44□□□□□ -1.38
LIG1-213ENST00000596672 GEMIN7Q9H840 131 aaKnown RBP6.44□□□□□ -1.38
LIG1-213ENST00000596672 LOC107984640A0A0U1RRK4 108 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 APOMO95445 188 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 MALP21145 153 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 HERVK_113P61574 105 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 LINC00242Q5T6M2 205 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 PHF5AQ7RTV0 110 aaKnown RBP6.43□□□□□ -1.38
LIG1-213ENST00000596672 CAMK2N2Q96S95 79 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 C6orf48Q9UBA6 75 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 TP73-AS1Q9UF72 201 aa6.43□□□□□ -1.38
LIG1-213ENST00000596672 TMEM223A0PJW6 202 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 K7EP34 96 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 FABP2P12104 132 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 OCIAD2Q56VL3 154 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 Q6ZRP5 223 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 Q6ZVH6 145 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 PCP2Q8IVA1 136 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 TTTY13Q9BZ97 58 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 PSORS1C2Q9UIG4 136 aa6.42□□□□□ -1.38
LIG1-213ENST00000596672 E9PLD3 99 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 SPINK8P0C7L1 97 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 HERVK_113P63121 156 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 FAM19A3Q7Z5A8 133 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 LINC00474Q9P2X8 69 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 CDKN2A-AS1Q9UH64 79 aa6.41□□□□□ -1.38
LIG1-213ENST00000596672 A0A1W2PPM0 123 aa6.4□□□□□ -1.38
LIG1-213ENST00000596672 LEPROTO15243 131 aa6.4□□□□□ -1.38
LIG1-213ENST00000596672 PCP4P48539 62 aa6.4□□□□□ -1.38
LIG1-213ENST00000596672 RNF151Q2KHN1 245 aa6.4□□□□□ -1.38
LIG1-213ENST00000596672 C2orf82Q6UX34 121 aa6.4□□□□□ -1.38
LIG1-213ENST00000596672 A0A087WZ39 114 aa6.39□□□□□ -1.39
LIG1-213ENST00000596672 H3BUT2 72 aa6.39□□□□□ -1.39
LIG1-213ENST00000596672 TSPEAR-AS2P59090 65 aa6.39□□□□□ -1.39
LIG1-213ENST00000596672 RPL18AQ02543 176 aaKnown RBP6.39□□□□□ -1.39
LIG1-213ENST00000596672 SPINK6Q6UWN8 80 aa6.39□□□□□ -1.39
LIG1-213ENST00000596672 CEND1Q8N111 149 aa6.39□□□□□ -1.39
LIG1-213ENST00000596672 IGLV5-45A0A087WSX0 123 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 J3QQQ9 107 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 TLX1NBP0CAT3 122 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 PLEKHB2Q96CS7 222 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 VPS25Q9BRG1 176 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 SPCS1Q9Y6A9 102 aa6.38□□□□□ -1.39
LIG1-213ENST00000596672 MYMXA0A1B0GTQ4 84 aa6.37□□□□□ -1.39
LIG1-213ENST00000596672 TMEM238LA0A1B0GVL6 79 aa6.37□□□□□ -1.39
LIG1-213ENST00000596672 A6NJY4 79 aa6.37□□□□□ -1.39
LIG1-213ENST00000596672 ZNF815PA8K554 130 aa6.37□□□□□ -1.39
LIG1-213ENST00000596672 LGALS3P17931 250 aaKnown RBP6.37□□□□□ -1.39
LIG1-213ENST00000596672 C9orf129Q5T035 196 aaKnown RBP6.37□□□□□ -1.39
LIG1-213ENST00000596672 J3QR89 54 aa6.36□□□□□ -1.39
LIG1-213ENST00000596672 NDUFA1O15239 70 aa6.36□□□□□ -1.39
LIG1-213ENST00000596672 GAGE2EQ4V326 116 aa6.36□□□□□ -1.39
LIG1-213ENST00000596672 GAGE2DQ9UEU5 116 aa6.36□□□□□ -1.39
LIG1-213ENST00000596672 SMIM1B2RUZ4 78 aa6.35□□□□□ -1.39
LIG1-213ENST00000596672 LYRM7Q5U5X0 104 aa6.35□□□□□ -1.39
LIG1-213ENST00000596672 RAB37Q96AX2 223 aa6.35□□□□□ -1.39
LIG1-213ENST00000596672 HIST1H4GQ99525 98 aa6.35□□□□□ -1.39
LIG1-213ENST00000596672 IGLV5-39A0A0G2JS06 123 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 F8W1H4 67 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 KRTAP1-4P0C5Y4 121 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 FXYD2P54710 66 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 C1orf137Q5JT78 98 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 FAM19A5Q7Z5A7 132 aaPredicted RBP6.34□□□□□ -1.39
LIG1-213ENST00000596672 PKIGQ9Y2B9 76 aa6.34□□□□□ -1.39
LIG1-213ENST00000596672 A0A1B0GWB2 263 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 F8WDY8 70 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 IGLV7-43P04211 117 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 SCGB1D4Q6XE38 83 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 NHP2Q9NX24 153 aaKnown RBP6.33□□□□□ -1.4
LIG1-213ENST00000596672 TOMM7Q9P0U1 55 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 NDUFA12Q9UI09 145 aa6.33□□□□□ -1.4
LIG1-213ENST00000596672 REG3GQ6UW15 175 aa6.32□□□□□ -1.4
LIG1-213ENST00000596672 LINC01561Q8N1V8 128 aa6.32□□□□□ -1.4
LIG1-213ENST00000596672 PRR26Q8N8Z3 221 aa6.32□□□□□ -1.4
LIG1-213ENST00000596672 COX7B2Q8TF08 81 aa6.32□□□□□ -1.4
LIG1-213ENST00000596672 TRBV30A0A0K0K1B3 111 aa6.31□□□□□ -1.4
LIG1-213ENST00000596672 NDUFC2-KCTD14E9PQ53 114 aa6.31□□□□□ -1.4
LIG1-213ENST00000596672 LCE2DQ5TA82 110 aaPredicted RBP6.31□□□□□ -1.4
LIG1-213ENST00000596672 A0A0J9YXY3 114 aa6.3□□□□□ -1.4
LIG1-213ENST00000596672 C6orf226Q5I0X4 101 aa6.3□□□□□ -1.4
LIG1-213ENST00000596672 ZNF625Q96I27 306 aaPredicted RBP6.3□□□□□ -1.4
LIG1-213ENST00000596672 XAGE1AQ9HD64 81 aa6.3□□□□□ -1.4
LIG1-213ENST00000596672 SPANXB1Q9NS25 103 aaPredicted RBP6.3□□□□□ -1.4
LIG1-213ENST00000596672 H0Y9J4 135 aa6.29□□□□□ -1.4
LIG1-213ENST00000596672 M0QXV9 152 aa6.29□□□□□ -1.4
LIG1-213ENST00000596672 PRSS2P07478 247 aa6.29□□□□□ -1.4
LIG1-213ENST00000596672 RPL24P83731 157 aaKnown RBP6.28□□□□□ -1.4
LIG1-213ENST00000596672 Q8IZM0 81 aa6.28□□□□□ -1.4
LIG1-213ENST00000596672 NAA38Q9BRA0 125 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms