RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DAZ4Q86SG3 579 aaKnown RBP2.93□□□□□ -1.94
LIG3-211ENST00000588713 LINC00308Q8TCZ7 52 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 FAM104AQ969W3 186 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 OPRPNQ99935 248 aaPredicted RBP2.93□□□□□ -1.94
LIG3-211ENST00000588713 JPT2Q9H910 190 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 DAZ3Q9NR90 486 aaKnown RBP2.93□□□□□ -1.94
LIG3-211ENST00000588713 PKHD1L1Q86WI1 4243 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 TRAV13-2A0A0B4J235 113 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 TRAV12-3A0A0B4J271 114 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 TRAV25A0A0B4J276 109 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 A8MTW9 85 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 CRPP02741 224 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 PRSS2P07478 247 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 RPL28P46779 137 aaKnown RBP2.92□□□□□ -1.94
LIG3-211ENST00000588713 S100A7L2Q5SY68 101 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 LELP1Q5T871 98 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 FAM19A5Q7Z5A7 132 aaPredicted RBP2.92□□□□□ -1.94
LIG3-211ENST00000588713 SERP2Q8N6R1 65 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 CHCHD7Q9BUK0 85 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 RHPN1-AS1Q9BWJ2 59 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 APLNQ9ULZ1 77 aa2.92□□□□□ -1.94
LIG3-211ENST00000588713 K7EQG2 157 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 TRBV12-3P01733 135 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 IGHG2P01859 326 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 MALP21145 153 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 DEFB1P60022 68 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 NANOS2P60321 138 aaKnown RBP2.91□□□□□ -1.94
LIG3-211ENST00000588713 NPC2P61916 151 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 SNRPD3P62318 126 aaKnown RBP2.91□□□□□ -1.94
LIG3-211ENST00000588713 CFHR3Q02985 330 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 C4orf3Q8WVX3 66 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 ZNF625Q96I27 306 aaPredicted RBP2.91□□□□□ -1.94
LIG3-211ENST00000588713 OBSCN-AS1Q96MR7 158 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 LINC00467Q9BRT7 94 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 UPK3BQ9BT76 320 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 KRTAP3-1Q9BYR8 98 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 C22orf24Q9Y442 160 aa2.91□□□□□ -1.94
LIG3-211ENST00000588713 NACAE9PAV3 2078 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 SMIM1B2RUZ4 78 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 NDUFC2O95298 119 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 IGHV3-53P01767 116 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 BAALC-AS2P0C853 105 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 SOSTDC1Q6X4U4 206 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 WFDC10AQ9H1F0 79 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 Q9H8V8 135 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 CDKN2A-AS1Q9UH64 79 aa2.9□□□□□ -1.95
LIG3-211ENST00000588713 LRP1Q07954 4544 aaKnown RBP2.89□□□□□ -1.95
LIG3-211ENST00000588713 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.89□□□□□ -1.95
LIG3-211ENST00000588713 TRBV10-3A0A0K0K1G6 114 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 LOC107984640A0A0U1RRK4 108 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 hADV29S1A0JD25 119 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 IGKV2-29A2NJV5 120 aaPredicted RBP2.89□□□□□ -1.95
LIG3-211ENST00000588713 USP17L23D6RBM5 183 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 H0YGX0 51 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 BCE1O60756 84 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 SYNJ2BPP57105 145 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 SPINK13Q1W4C9 94 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 DPH3Q96FX2 82 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 FAM218AQ96MZ4 157 aa2.89□□□□□ -1.95
LIG3-211ENST00000588713 IGKV3-7A0A075B6H7 116 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 TRAV12-2A0A075B6T6 113 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 IGHV3OR16-12A0A075B7B8 117 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 TRBV10-1A0A0K0K1A3 114 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 FAM236DA0A1B0GTK5 79 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 F5H768 121 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 RS1O15537 224 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 IGLV1-51P01701 117 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 IGHV3-11P01762 117 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 SLPIP03973 132 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 FAM236CP0DP71 79 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 ATP5EP56381 51 aaPredicted RBP2.88□□□□□ -1.95
LIG3-211ENST00000588713 HAMPP81172 84 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 RNASE13Q5GAN3 156 aaKnown RBP2.88□□□□□ -1.95
LIG3-211ENST00000588713 LINC00242Q5T6M2 205 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 Q6ZR54 194 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 UBE2DNLQ8IWF7 75 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 KIR2DL5BQ8NHK3 375 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 DEFB104AQ8WTQ1 72 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 LINC00167Q96N53 147 aa2.88□□□□□ -1.95
LIG3-211ENST00000588713 TRAV13-1A0A0B4J241 112 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 JMJD7-PLA2G4BH0Y9G9 81 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 OXTP01178 125 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 INSP01308 110 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 PSMB8P28062 276 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 DEFB135Q30KP9 77 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 Q5XG85 94 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 DGAT2L7PQ6IED9 249 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 C11orf45Q8TAV5 145 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 CYSTM1Q9H1C7 97 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 C14orf132Q9NPU4 83 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 LINC00846Q9NV44 126 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 SERP1Q9Y6X1 66 aa2.87□□□□□ -1.95
LIG3-211ENST00000588713 IGKV2-28A0A075B6P5 120 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 A0A087WYN8 130 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 IGKV3D-7A0A0C4DH55 119 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 IBA57-AS1B1ANH7 110 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 K7EQD1 137 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 IGKV2D-28P01615 120 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 IGKV3-20P01619 116 aa2.86□□□□□ -1.95
LIG3-211ENST00000588713 CCKP06307 115 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms