RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 Q6ZN92 141 aa9.88□□□□□ -0.83
CLK3-227ENST00000570296 C18orf32Q8TCD1 76 aa9.86□□□□□ -0.83
CLK3-227ENST00000570296 RPS29P62273 56 aaKnown RBP9.85□□□□□ -0.83
CLK3-227ENST00000570296 Q8N377 158 aa9.85□□□□□ -0.83
CLK3-227ENST00000570296 CYSLTR1Q9Y271 337 aa9.85□□□□□ -0.83
CLK3-227ENST00000570296 LINC01549A6NIU2 74 aa9.84□□□□□ -0.83
CLK3-227ENST00000570296 LINC00614P0C842 121 aa9.84□□□□□ -0.83
CLK3-227ENST00000570296 SPRR4Q96PI1 79 aa9.84□□□□□ -0.83
CLK3-227ENST00000570296 TMEM126AQ9H061 195 aa9.84□□□□□ -0.83
CLK3-227ENST00000570296 C2orf66Q6UXQ4 117 aa9.83□□□□□ -0.84
CLK3-227ENST00000570296 COX6B2Q6YFQ2 88 aa9.83□□□□□ -0.84
CLK3-227ENST00000570296 BAGE3Q86Y29 109 aa9.83□□□□□ -0.84
CLK3-227ENST00000570296 LINC01546A6NGU7 62 aa9.82□□□□□ -0.84
CLK3-227ENST00000570296 SLC25A20O43772 301 aa9.82□□□□□ -0.84
CLK3-227ENST00000570296 PYGO1Q9Y3Y4 419 aa9.82□□□□□ -0.84
CLK3-227ENST00000570296 IGLV4-3A0A075B6K6 122 aa9.81□□□□□ -0.84
CLK3-227ENST00000570296 TMEM141Q96I45 108 aa9.81□□□□□ -0.84
CLK3-227ENST00000570296 TMEM238C9JI98 176 aa9.8□□□□□ -0.84
CLK3-227ENST00000570296 CXCL5P42830 114 aa9.8□□□□□ -0.84
CLK3-227ENST00000570296 PAPPA-AS1Q5QFB9 102 aa9.8□□□□□ -0.84
CLK3-227ENST00000570296 CHCHD1Q96BP2 118 aaKnown RBP9.8□□□□□ -0.84
CLK3-227ENST00000570296 HIGD2AQ9BW72 106 aa9.8□□□□□ -0.84
CLK3-227ENST00000570296 ZNF706Q9Y5V0 76 aaPredicted RBP9.8□□□□□ -0.84
CLK3-227ENST00000570296 CFC1P0CG37 223 aa9.79□□□□□ -0.84
CLK3-227ENST00000570296 TEX43Q6ZNM6 134 aa9.79□□□□□ -0.84
CLK3-227ENST00000570296 TOMM6Q96B49 74 aa9.79□□□□□ -0.84
CLK3-227ENST00000570296 SCGB3A1Q96QR1 104 aa9.79□□□□□ -0.84
CLK3-227ENST00000570296 KRTAP4-16G5E9R7 235 aaPredicted RBP9.78□□□□□ -0.84
CLK3-227ENST00000570296 M0R378 163 aa9.78□□□□□ -0.84
CLK3-227ENST00000570296 NPSP0C0P6 89 aa9.78□□□□□ -0.84
CLK3-227ENST00000570296 C2orf88Q9BSF0 95 aa9.78□□□□□ -0.84
CLK3-227ENST00000570296 HSBP1O75506 76 aa9.77□□□□□ -0.85
CLK3-227ENST00000570296 HBDP02042 147 aa9.77□□□□□ -0.85
CLK3-227ENST00000570296 TIMM17AQ99595 171 aa9.77□□□□□ -0.85
CLK3-227ENST00000570296 ERASQ7Z444 233 aa9.76□□□□□ -0.85
CLK3-227ENST00000570296 URB1-AS1Q96HZ7 61 aa9.76□□□□□ -0.85
CLK3-227ENST00000570296 VCX2Q9H322 139 aa9.76□□□□□ -0.85
CLK3-227ENST00000570296 GEMIN7Q9H840 131 aaKnown RBP9.76□□□□□ -0.85
CLK3-227ENST00000570296 IGIPA6NJ69 53 aa9.74□□□□□ -0.85
CLK3-227ENST00000570296 PMCHL1Q16048 86 aa9.74□□□□□ -0.85
CLK3-227ENST00000570296 KRTAP19-1Q8IUB9 90 aa9.74□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BKO60814 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 SERF1AO75920 110 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 ATP5LO75964 103 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BJP06899 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BOP23527 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BBP33778 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BDP58876 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BCP62807 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST2H2BEQ16778 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.73□□□□□ -0.85
CLK3-227ENST00000570296 FAM19A3Q7Z5A8 133 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BHQ93079 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BNQ99877 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 HIST1H2BMQ99879 126 aa9.73□□□□□ -0.85
CLK3-227ENST00000570296 AMELXQ99217 191 aa9.71□□□□□ -0.86
CLK3-227ENST00000570296 A0A096LNJ9 63 aa9.7□□□□□ -0.86
CLK3-227ENST00000570296 NDUFA6P56556 154 aa9.7□□□□□ -0.86
CLK3-227ENST00000570296 SEC11AP67812 179 aa9.7□□□□□ -0.86
CLK3-227ENST00000570296 PDZD11Q5EBL8 140 aa9.7□□□□□ -0.86
CLK3-227ENST00000570296 CDKN2A-AS1Q9UH64 79 aa9.7□□□□□ -0.86
CLK3-227ENST00000570296 HERVK_113P63121 156 aa9.69□□□□□ -0.86
CLK3-227ENST00000570296 PMVKQ15126 192 aa9.69□□□□□ -0.86
CLK3-227ENST00000570296 ZC2HC1BQ5TFG8 222 aa9.69□□□□□ -0.86
CLK3-227ENST00000570296 VPREB1P12018 145 aa9.68□□□□□ -0.86
CLK3-227ENST00000570296 LEPROTL1O95214 131 aa9.67□□□□□ -0.86
CLK3-227ENST00000570296 SSBP3-AS1Q7Z2R9 100 aa9.67□□□□□ -0.86
CLK3-227ENST00000570296 IFI27L1Q96BM0 104 aa9.67□□□□□ -0.86
CLK3-227ENST00000570296 HSPB8Q9UJY1 196 aa9.67□□□□□ -0.86
CLK3-227ENST00000570296 LINC00310P59036 64 aa9.66□□□□□ -0.86
CLK3-227ENST00000570296 LINC00483Q53H64 154 aa9.66□□□□□ -0.86
CLK3-227ENST00000570296 CST9LQ9H4G1 147 aa9.66□□□□□ -0.86
CLK3-227ENST00000570296 MOBPQ13875 183 aa9.65□□□□□ -0.86
CLK3-227ENST00000570296 COX7B2Q8TF08 81 aa9.65□□□□□ -0.86
CLK3-227ENST00000570296 S100A6P06703 90 aa9.64□□□□□ -0.87
CLK3-227ENST00000570296 FABP4P15090 132 aa9.64□□□□□ -0.87
CLK3-227ENST00000570296 RPL24P83731 157 aaKnown RBP9.64□□□□□ -0.87
CLK3-227ENST00000570296 SMIM1B2RUZ4 78 aa9.63□□□□□ -0.87
CLK3-227ENST00000570296 COA6Q5JTJ3 125 aaKnown RBP9.63□□□□□ -0.87
CLK3-227ENST00000570296 TINCRA0A1B0GVN0 87 aa9.62□□□□□ -0.87
CLK3-227ENST00000570296 KRTAP9-8Q9BYQ0 159 aa9.62□□□□□ -0.87
CLK3-227ENST00000570296 C9orf92A6NGG3 77 aa9.61□□□□□ -0.87
CLK3-227ENST00000570296 MAP1LC3CQ9BXW4 147 aa9.61□□□□□ -0.87
CLK3-227ENST00000570296 CHTOPQ9Y3Y2 248 aaKnown RBP9.61□□□□□ -0.87
CLK3-227ENST00000570296 IGLV9-49A0A0B4J1Y8 123 aa9.6□□□□□ -0.87
CLK3-227ENST00000570296 TRAV12-1A0A0B4J245 112 aa9.6□□□□□ -0.87
CLK3-227ENST00000570296 H0Y8G0 127 aa9.6□□□□□ -0.87
CLK3-227ENST00000570296 H3BRM9 83 aa9.59□□□□□ -0.87
CLK3-227ENST00000570296 IGLC3P0DOY3 106 aa9.58□□□□□ -0.88
CLK3-227ENST00000570296 S100A2P29034 98 aa9.58□□□□□ -0.88
CLK3-227ENST00000570296 SMCR5Q8TEV8 140 aa9.58□□□□□ -0.88
CLK3-227ENST00000570296 SND1-IT1Q9HBX3 110 aa9.58□□□□□ -0.88
CLK3-227ENST00000570296 GAGE2AQ6NT46 116 aa9.56□□□□□ -0.88
CLK3-227ENST00000570296 PFN2P35080 140 aa9.55□□□□□ -0.88
CLK3-227ENST00000570296 TMEM170BQ5T4T1 132 aa9.55□□□□□ -0.88
CLK3-227ENST00000570296 Q8NDZ9 215 aa9.55□□□□□ -0.88
CLK3-227ENST00000570296 IGLV5-45A0A087WSX0 123 aa9.54□□□□□ -0.88
CLK3-227ENST00000570296 C11orf86A6NJI1 115 aa9.53□□□□□ -0.88
CLK3-227ENST00000570296 ZNF22P17026 224 aaPredicted RBP9.53□□□□□ -0.88
CLK3-227ENST00000570296 PLNP26678 52 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms