RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 C6orf223Q8N319 242 aa7.99□□□□□ -1.13
CLN3-238ENST00000569430 HELZ2Q9BYK8 2649 aaKnown RBP7.98□□□□□ -1.13
CLN3-238ENST00000569430 LINC01006Q8NI28 216 aa7.98□□□□□ -1.13
CLN3-238ENST00000569430 TRAV7A0A075B6U4 112 aa7.98□□□□□ -1.13
CLN3-238ENST00000569430 CYSRT1A8MQ03 144 aa7.98□□□□□ -1.13
CLN3-238ENST00000569430 KRTAP10-9P60411 292 aa7.98□□□□□ -1.13
CLN3-238ENST00000569430 APCP25054 2843 aa7.97□□□□□ -1.13
CLN3-238ENST00000569430 FUSP35637 526 aaKnown RBP eCLIP7.97□□□□□ -1.13
CLN3-238ENST00000569430 APOC4P55056 127 aa7.97□□□□□ -1.13
CLN3-238ENST00000569430 SPART-AS1P0CW21 52 aa7.96□□□□□ -1.13
CLN3-238ENST00000569430 Q6ZVQ6 151 aa7.96□□□□□ -1.14
CLN3-238ENST00000569430 TRBV10-3A0A0K0K1G6 114 aa7.96□□□□□ -1.14
CLN3-238ENST00000569430 RPS28P62857 69 aaKnown RBP7.95□□□□□ -1.14
CLN3-238ENST00000569430 ZNF469Q96JG9 3925 aaPredicted RBP7.95□□□□□ -1.14
CLN3-238ENST00000569430 NBPF19A0A087WUL8 3843 aa7.95□□□□□ -1.14
CLN3-238ENST00000569430 LINC01547P58512 204 aaPredicted RBP7.95□□□□□ -1.14
CLN3-238ENST00000569430 LRCOL1A6NCL2 159 aa7.95□□□□□ -1.14
CLN3-238ENST00000569430 Q8N9L7 120 aa7.94□□□□□ -1.14
CLN3-238ENST00000569430 NDUFC2-KCTD14E9PQ53 114 aa7.94□□□□□ -1.14
CLN3-238ENST00000569430 PRR4Q16378 134 aa7.94□□□□□ -1.14
CLN3-238ENST00000569430 MIFP14174 115 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 LINC00575Q6W349 94 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 CELA1Q9UNI1 258 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 ZNF73O43830 326 aaPredicted RBP7.93□□□□□ -1.14
CLN3-238ENST00000569430 UBE2BP63146 152 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 SERP1Q9Y6X1 66 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 SMIM26A0A096LP01 95 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 ETDCA0A1B0GVM5 59 aa7.93□□□□□ -1.14
CLN3-238ENST00000569430 COX17Q14061 63 aa7.92□□□□□ -1.14
CLN3-238ENST00000569430 LINC01600Q96MT4 127 aa7.92□□□□□ -1.14
CLN3-238ENST00000569430 H3BQ85 93 aa7.91□□□□□ -1.14
CLN3-238ENST00000569430 TRAV10A0A0B4J240 114 aa7.9□□□□□ -1.14
CLN3-238ENST00000569430 J3QKU1 62 aa7.9□□□□□ -1.14
CLN3-238ENST00000569430 C2orf48Q96LS8 159 aa7.9□□□□□ -1.14
CLN3-238ENST00000569430 SETXQ7Z333 2677 aaKnown RBP7.9□□□□□ -1.15
CLN3-238ENST00000569430 FAM19A3Q7Z5A8 133 aa7.89□□□□□ -1.15
CLN3-238ENST00000569430 C10orf25Q5T742 122 aa7.89□□□□□ -1.15
CLN3-238ENST00000569430 MUC7Q8TAX7 377 aa7.89□□□□□ -1.15
CLN3-238ENST00000569430 CYSTM1Q9H1C7 97 aa7.89□□□□□ -1.15
CLN3-238ENST00000569430 IGLV1-51P01701 117 aa7.89□□□□□ -1.15
CLN3-238ENST00000569430 LYRM9A8MSI8 78 aa7.88□□□□□ -1.15
CLN3-238ENST00000569430 ATRQ13535 2644 aa7.88□□□□□ -1.15
CLN3-238ENST00000569430 UBR5O95071 2799 aaPredicted RBP7.88□□□□□ -1.15
CLN3-238ENST00000569430 A0A1B0GUV1 79 aa7.88□□□□□ -1.15
CLN3-238ENST00000569430 NDUFC1O43677 76 aa7.88□□□□□ -1.15
CLN3-238ENST00000569430 FAM30AQ9NZY2 134 aa7.87□□□□□ -1.15
CLN3-238ENST00000569430 C9orf66Q5T8R8 295 aa7.87□□□□□ -1.15
CLN3-238ENST00000569430 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.87□□□□□ -1.15
CLN3-238ENST00000569430 SPATA3Q8NHX4 192 aa7.86□□□□□ -1.15
CLN3-238ENST00000569430 TMEM254Q8TBM7 123 aa7.86□□□□□ -1.15
CLN3-238ENST00000569430 UNC79Q9P2D8 2635 aa7.86□□□□□ -1.15
CLN3-238ENST00000569430 TRBV7-6A0A0J9YX20 115 aa7.85□□□□□ -1.15
CLN3-238ENST00000569430 TM2D3Q9BRN9 247 aa7.85□□□□□ -1.15
CLN3-238ENST00000569430 Q6ZQT0 140 aa7.85□□□□□ -1.15
CLN3-238ENST00000569430 TENM4Q6N022 2769 aa7.85□□□□□ -1.15
CLN3-238ENST00000569430 RPL37AP8A6NKH3 93 aa7.84□□□□□ -1.15
CLN3-238ENST00000569430 AKAP9Q99996 3911 aa7.83□□□□□ -1.16
CLN3-238ENST00000569430 M0R378 163 aa7.83□□□□□ -1.16
CLN3-238ENST00000569430 LELP1Q5T871 98 aa7.83□□□□□ -1.16
CLN3-238ENST00000569430 NANOS2P60321 138 aaKnown RBP7.82□□□□□ -1.16
CLN3-238ENST00000569430 MP68P56378 58 aa7.81□□□□□ -1.16
CLN3-238ENST00000569430 PSCAO43653 123 aa7.81□□□□□ -1.16
CLN3-238ENST00000569430 VWFP04275 2813 aa7.81□□□□□ -1.16
CLN3-238ENST00000569430 M0R2N4 97 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 PRYO14603 147 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 SYCNQ0VAF6 134 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 C1orf195Q5TG92 126 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 A0A096LNI7 61 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 WFDC13Q8IUB5 93 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 PRO0628Q9UI54 55 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 C22orf24Q9Y442 160 aa7.8□□□□□ -1.16
CLN3-238ENST00000569430 ATP5EP56381 51 aaPredicted RBP7.8□□□□□ -1.16
CLN3-238ENST00000569430 CXCL6P80162 114 aa7.79□□□□□ -1.16
CLN3-238ENST00000569430 WFDC10BQ8IUB3 73 aa7.79□□□□□ -1.16
CLN3-238ENST00000569430 HIGD2AQ9BW72 106 aa7.79□□□□□ -1.16
CLN3-238ENST00000569430 LINC00474Q9P2X8 69 aa7.79□□□□□ -1.16
CLN3-238ENST00000569430 LY6G6DO95868 133 aa7.79□□□□□ -1.16
CLN3-238ENST00000569430 GIG44P09565 113 aaPredicted RBP7.79□□□□□ -1.16
CLN3-238ENST00000569430 KPRPQ5T749 579 aaPredicted RBP7.78□□□□□ -1.16
CLN3-238ENST00000569430 V9GYY9 64 aa7.78□□□□□ -1.16
CLN3-238ENST00000569430 TEP1Q99973 2627 aaKnown RBP7.78□□□□□ -1.16
CLN3-238ENST00000569430 CR1P17927 2039 aa7.78□□□□□ -1.16
CLN3-238ENST00000569430 IGKV2-24A0A0C4DH68 120 aa7.78□□□□□ -1.16
CLN3-238ENST00000569430 LINC00336Q6ZUF6 198 aa7.78□□□□□ -1.16
CLN3-238ENST00000569430 SMR3AQ99954 134 aa7.77□□□□□ -1.17
CLN3-238ENST00000569430 PLAC8L1A1L4L8 177 aa7.77□□□□□ -1.17
CLN3-238ENST00000569430 H7BZZ5 65 aa7.77□□□□□ -1.17
CLN3-238ENST00000569430 PSPHP1O15172 72 aa7.77□□□□□ -1.17
CLN3-238ENST00000569430 SPTSSBQ8NFR3 76 aa7.77□□□□□ -1.17
CLN3-238ENST00000569430 C6orf48Q9UBA6 75 aa7.76□□□□□ -1.17
CLN3-238ENST00000569430 Q6ZRU5 148 aa7.76□□□□□ -1.17
CLN3-238ENST00000569430 DEFB116Q30KQ4 102 aa7.76□□□□□ -1.17
CLN3-238ENST00000569430 KIAA0087Q14695 138 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 IL17DQ8TAD2 202 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 LOC110117498A0A087WWA1 95 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 EGFEM1PQ0D2K5 195 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 OBSCN-AS1Q96MR7 158 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 C1orf137Q5JT78 98 aa7.75□□□□□ -1.17
CLN3-238ENST00000569430 A0A096LNT2 108 aa7.74□□□□□ -1.17
CLN3-238ENST00000569430 A0A0J9YWU9 116 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms