RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 C6orf99Q4VX62 202 aa9.05□□□□□ -0.96
CLN3-210ENST00000563874 USP17L23D6RBM5 183 aa9.05□□□□□ -0.96
CLN3-210ENST00000563874 KRTAP1-1Q07627 177 aa9.05□□□□□ -0.96
CLN3-210ENST00000563874 C16orf95Q9H693 158 aa9.05□□□□□ -0.96
CLN3-210ENST00000563874 ANK3Q12955 4377 aaKnown RBP9.04□□□□□ -0.96
CLN3-210ENST00000563874 PDZD2O15018 2839 aa9.04□□□□□ -0.96
CLN3-210ENST00000563874 CRYGAP11844 174 aa9.04□□□□□ -0.96
CLN3-210ENST00000563874 LINC00612Q8N6U2 182 aa9.04□□□□□ -0.96
CLN3-210ENST00000563874 NOTCH2Q04721 2471 aa9.04□□□□□ -0.96
CLN3-210ENST00000563874 CD164L2Q6UWJ8 174 aa9.03□□□□□ -0.96
CLN3-210ENST00000563874 REG3AQ06141 175 aa9.03□□□□□ -0.96
CLN3-210ENST00000563874 C6orf223Q8N319 242 aa9.03□□□□□ -0.96
CLN3-210ENST00000563874 SPATA3Q8NHX4 192 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 TMEM256-PLSCR3K7ERE1 68 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 KRTAP10-3P60369 221 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 DEFB135Q30KP9 77 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 S100A7L2Q5SY68 101 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 C10orf25Q5T742 122 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 LINC00167Q96N53 147 aa9.02□□□□□ -0.97
CLN3-210ENST00000563874 SERP2Q8N6R1 65 aa9.01□□□□□ -0.97
CLN3-210ENST00000563874 JMJD7-PLA2G4BH0Y9G9 81 aa9.01□□□□□ -0.97
CLN3-210ENST00000563874 FAM19A1Q7Z5A9 133 aa9.01□□□□□ -0.97
CLN3-210ENST00000563874 UNQ6190/PRO20217Q6UXQ8 127 aa9.01□□□□□ -0.97
CLN3-210ENST00000563874 TRAV23DV6A0A075B6W5 121 aa9□□□□□ -0.97
CLN3-210ENST00000563874 ENHOQ6UWT2 76 aa9□□□□□ -0.97
CLN3-210ENST00000563874 NDUFC2O95298 119 aa9□□□□□ -0.97
CLN3-210ENST00000563874 HTN3P15516 51 aa8.99□□□□□ -0.97
CLN3-210ENST00000563874 COX17Q14061 63 aa8.99□□□□□ -0.97
CLN3-210ENST00000563874 SMR3AQ99954 134 aa8.99□□□□□ -0.97
CLN3-210ENST00000563874 TENM1Q9UKZ4 2725 aa8.98□□□□□ -0.97
CLN3-210ENST00000563874 UPK3BQ9BT76 320 aa8.97□□□□□ -0.97
CLN3-210ENST00000563874 UNC79Q9P2D8 2635 aa8.97□□□□□ -0.97
CLN3-210ENST00000563874 SPAG11BQ08648 103 aa8.97□□□□□ -0.97
CLN3-210ENST00000563874 IGHV4-28A0A0C4DH34 117 aa8.96□□□□□ -0.97
CLN3-210ENST00000563874 M0R2N4 97 aa8.96□□□□□ -0.97
CLN3-210ENST00000563874 LINC00575Q6W349 94 aa8.96□□□□□ -0.97
CLN3-210ENST00000563874 LAMTOR3Q9UHA4 124 aa8.96□□□□□ -0.97
CLN3-210ENST00000563874 BRK1Q8WUW1 75 aa8.96□□□□□ -0.98
CLN3-210ENST00000563874 CELA1Q9UNI1 258 aa8.96□□□□□ -0.98
CLN3-210ENST00000563874 GHRHP01286 108 aa8.96□□□□□ -0.98
CLN3-210ENST00000563874 DAD1P61803 113 aa8.96□□□□□ -0.98
CLN3-210ENST00000563874 TMEM258P61165 79 aa8.95□□□□□ -0.98
CLN3-210ENST00000563874 UBL5Q9BZL1 73 aa8.95□□□□□ -0.98
CLN3-210ENST00000563874 LYRM9A8MSI8 78 aa8.94□□□□□ -0.98
CLN3-210ENST00000563874 KLK12Q9UKR0 248 aa8.94□□□□□ -0.98
CLN3-210ENST00000563874 RBM3P98179 157 aaKnown RBP8.94□□□□□ -0.98
CLN3-210ENST00000563874 XAGE1AQ9HD64 81 aa8.94□□□□□ -0.98
CLN3-210ENST00000563874 Q6ZQY7 126 aa8.93□□□□□ -0.98
CLN3-210ENST00000563874 ATRQ13535 2644 aa8.93□□□□□ -0.98
CLN3-210ENST00000563874 Q6ZQT0 140 aa8.92□□□□□ -0.98
CLN3-210ENST00000563874 TRRAPQ9Y4A5 3859 aa8.92□□□□□ -0.98
CLN3-210ENST00000563874 HIVEP1P15822 2718 aa8.92□□□□□ -0.98
CLN3-210ENST00000563874 ATP5EP2Q5VTU8 51 aa8.91□□□□□ -0.98
CLN3-210ENST00000563874 HAMPP81172 84 aa8.91□□□□□ -0.98
CLN3-210ENST00000563874 TRBV10-3A0A0K0K1G6 114 aa8.9□□□□□ -0.99
CLN3-210ENST00000563874 LYPD5Q6UWN5 251 aa8.9□□□□□ -0.99
CLN3-210ENST00000563874 IGLV6-57P01721 117 aa8.89□□□□□ -0.99
CLN3-210ENST00000563874 C20orf197Q8N268 126 aa8.89□□□□□ -0.99
CLN3-210ENST00000563874 TEP1Q99973 2627 aaKnown RBP8.88□□□□□ -0.99
CLN3-210ENST00000563874 A0A0J9YWU9 116 aa8.87□□□□□ -0.99
CLN3-210ENST00000563874 IGHV4-30-4P0DP06 118 aa8.87□□□□□ -0.99
CLN3-210ENST00000563874 C6orf48Q9UBA6 75 aa8.87□□□□□ -0.99
CLN3-210ENST00000563874 LINC01547P58512 204 aaPredicted RBP8.87□□□□□ -0.99
CLN3-210ENST00000563874 Q8NAQ8 132 aa8.87□□□□□ -0.99
CLN3-210ENST00000563874 LELP1Q5T871 98 aa8.86□□□□□ -0.99
CLN3-210ENST00000563874 OTOGQ6ZRI0 2925 aa8.86□□□□□ -0.99
CLN3-210ENST00000563874 HIGD2BQ4VC39 106 aa8.86□□□□□ -0.99
CLN3-210ENST00000563874 Q6ZVQ6 151 aa8.86□□□□□ -0.99
CLN3-210ENST00000563874 PKD1L1Q8TDX9 2849 aa8.86□□□□□ -0.99
CLN3-210ENST00000563874 LOC110117498A0A087WWA1 95 aa8.85□□□□□ -0.99
CLN3-210ENST00000563874 APOC4P55056 127 aa8.85□□□□□ -0.99
CLN3-210ENST00000563874 PMAIP1Q13794 54 aa8.85□□□□□ -0.99
CLN3-210ENST00000563874 SCXQ7RTU7 201 aa8.85□□□□□ -0.99
CLN3-210ENST00000563874 C9orf66Q5T8R8 295 aa8.85□□□□□ -0.99
CLN3-210ENST00000563874 PRR34Q9NV39 138 aa8.84□□□□□ -0.99
CLN3-210ENST00000563874 SPART-AS1P0CW21 52 aa8.84□□□□□ -0.99
CLN3-210ENST00000563874 DIRC1Q969H9 104 aa8.84□□□□□ -0.99
CLN3-210ENST00000563874 TRAV10A0A0B4J240 114 aa8.83□□□□□ -1
CLN3-210ENST00000563874 ZNF73O43830 326 aaPredicted RBP8.83□□□□□ -1
CLN3-210ENST00000563874 MUC7Q8TAX7 377 aa8.82□□□□□ -1
CLN3-210ENST00000563874 MIFP14174 115 aa8.81□□□□□ -1
CLN3-210ENST00000563874 NSD1Q96L73 2696 aaPredicted RBP8.81□□□□□ -1
CLN3-210ENST00000563874 COX7BP24311 80 aa8.81□□□□□ -1
CLN3-210ENST00000563874 WFDC10BQ8IUB3 73 aa8.8□□□□□ -1
CLN3-210ENST00000563874 CAMK2N2Q96S95 79 aa8.8□□□□□ -1
CLN3-210ENST00000563874 CD164Q04900 197 aa8.79□□□□□ -1
CLN3-210ENST00000563874 SNURFQ9Y675 71 aa8.79□□□□□ -1
CLN3-210ENST00000563874 GVQW2A0A096LPI5 108 aaPredicted RBP8.79□□□□□ -1
CLN3-210ENST00000563874 ELOF1P60002 83 aaKnown RBP8.77□□□□□ -1
CLN3-210ENST00000563874 VPREB1P12018 145 aa8.77□□□□□ -1.01
CLN3-210ENST00000563874 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.77□□□□□ -1.01
CLN3-210ENST00000563874 Q6ZRU5 148 aa8.77□□□□□ -1.01
CLN3-210ENST00000563874 TRAV7A0A075B6U4 112 aa8.77□□□□□ -1.01
CLN3-210ENST00000563874 TRBV7-4A0A0J9YYF1 115 aa8.76□□□□□ -1.01
CLN3-210ENST00000563874 INAFM1C9JVW0 142 aa8.76□□□□□ -1.01
CLN3-210ENST00000563874 PDE6GP18545 87 aa8.76□□□□□ -1.01
CLN3-210ENST00000563874 RMI2Q96E14 147 aa8.75□□□□□ -1.01
CLN3-210ENST00000563874 H7BZZ5 65 aa8.75□□□□□ -1.01
CLN3-210ENST00000563874 Q8N9L7 120 aa8.75□□□□□ -1.01
CLN3-210ENST00000563874 C11orf45Q8TAV5 145 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms