RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 IGKV2-28A0A075B6P5 120 aa10.14□□□□□ -0.79
TSPAN3-208ENST00000560514 IGKV2D-28P01615 120 aa10.14□□□□□ -0.79
TSPAN3-208ENST00000560514 PRLHP81277 87 aa10.14□□□□□ -0.79
TSPAN3-208ENST00000560514 SFTA2Q6UW10 78 aa10.14□□□□□ -0.79
TSPAN3-208ENST00000560514 FAM19A1Q7Z5A9 133 aa10.14□□□□□ -0.79
TSPAN3-208ENST00000560514 A0A096LNJ9 63 aa10.13□□□□□ -0.79
TSPAN3-208ENST00000560514 HBDP02042 147 aa10.13□□□□□ -0.79
TSPAN3-208ENST00000560514 C3orf22Q8N5N4 141 aa10.13□□□□□ -0.79
TSPAN3-208ENST00000560514 C18orf32Q8TCD1 76 aa10.13□□□□□ -0.79
TSPAN3-208ENST00000560514 NDUFA6P56556 154 aa10.12□□□□□ -0.79
TSPAN3-208ENST00000560514 KRTAP13-3Q3SY46 172 aa10.12□□□□□ -0.79
TSPAN3-208ENST00000560514 URB1-AS1Q96HZ7 61 aa10.12□□□□□ -0.79
TSPAN3-208ENST00000560514 ZNF22P17026 224 aaPredicted RBP10.11□□□□□ -0.79
TSPAN3-208ENST00000560514 RPL24P83731 157 aaKnown RBP10.1□□□□□ -0.79
TSPAN3-208ENST00000560514 PFN2P35080 140 aa10.09□□□□□ -0.79
TSPAN3-208ENST00000560514 BAGE3Q86Y29 109 aa10.09□□□□□ -0.79
TSPAN3-208ENST00000560514 KRTAP4-1Q9BYQ7 146 aa10.09□□□□□ -0.79
TSPAN3-208ENST00000560514 ERG28Q9UKR5 140 aa10.09□□□□□ -0.79
TSPAN3-208ENST00000560514 CBLN2Q8IUK8 224 aa10.08□□□□□ -0.8
TSPAN3-208ENST00000560514 PLEKHB2Q96CS7 222 aa10.08□□□□□ -0.8
TSPAN3-208ENST00000560514 SND1-IT1Q9HBX3 110 aa10.08□□□□□ -0.8
TSPAN3-208ENST00000560514 SCO1O75880 301 aa10.07□□□□□ -0.8
TSPAN3-208ENST00000560514 SNAPINO95295 136 aa10.07□□□□□ -0.8
TSPAN3-208ENST00000560514 TMEM126AQ9H061 195 aa10.07□□□□□ -0.8
TSPAN3-208ENST00000560514 VPREB1P12018 145 aa10.06□□□□□ -0.8
TSPAN3-208ENST00000560514 SVBPQ8N300 66 aa10.06□□□□□ -0.8
TSPAN3-208ENST00000560514 C11orf86A6NJI1 115 aa10.05□□□□□ -0.8
TSPAN3-208ENST00000560514 NDUFA5Q16718 116 aa10.05□□□□□ -0.8
TSPAN3-208ENST00000560514 TMEM170BQ5T4T1 132 aa10.05□□□□□ -0.8
TSPAN3-208ENST00000560514 HIGD2AQ9BW72 106 aa10.05□□□□□ -0.8
TSPAN3-208ENST00000560514 NDUFA12Q9UI09 145 aa10.05□□□□□ -0.8
TSPAN3-208ENST00000560514 TMEM238C9JI98 176 aa10.04□□□□□ -0.8
TSPAN3-208ENST00000560514 APOC3P02656 99 aa10.04□□□□□ -0.8
TSPAN3-208ENST00000560514 PMCHL1Q16048 86 aa10.04□□□□□ -0.8
TSPAN3-208ENST00000560514 ZNF625Q96I27 306 aaPredicted RBP10.04□□□□□ -0.8
TSPAN3-208ENST00000560514 TRAV12-1A0A0B4J245 112 aa10.03□□□□□ -0.8
TSPAN3-208ENST00000560514 DAND5Q8N907 189 aa10.03□□□□□ -0.8
TSPAN3-208ENST00000560514 CHCHD1Q96BP2 118 aaKnown RBP10.03□□□□□ -0.8
TSPAN3-208ENST00000560514 CHTOPQ9Y3Y2 248 aaKnown RBP10.03□□□□□ -0.8
TSPAN3-208ENST00000560514 Q8NBF4 154 aa10.01□□□□□ -0.81
TSPAN3-208ENST00000560514 ZNF706Q9Y5V0 76 aaPredicted RBP10.01□□□□□ -0.81
TSPAN3-208ENST00000560514 M0R378 163 aa10□□□□□ -0.81
TSPAN3-208ENST00000560514 SPINK1P00995 79 aa10□□□□□ -0.81
TSPAN3-208ENST00000560514 TMEM223A0PJW6 202 aa9.99□□□□□ -0.81
TSPAN3-208ENST00000560514 CFC1BP0CG36 223 aa9.99□□□□□ -0.81
TSPAN3-208ENST00000560514 IFI27L1Q96BM0 104 aa9.99□□□□□ -0.81
TSPAN3-208ENST00000560514 SPRR4Q96PI1 79 aa9.99□□□□□ -0.81
TSPAN3-208ENST00000560514 LINC00587B1AMM8 73 aa9.98□□□□□ -0.81
TSPAN3-208ENST00000560514 LINC00158P58513 81 aa9.98□□□□□ -0.81
TSPAN3-208ENST00000560514 YPEL4Q96NS1 127 aa9.98□□□□□ -0.81
TSPAN3-208ENST00000560514 FAM19A2Q8N3H0 131 aa9.96□□□□□ -0.82
TSPAN3-208ENST00000560514 HERV-K104P63124 156 aa9.95□□□□□ -0.82
TSPAN3-208ENST00000560514 Q8NDZ9 215 aa9.95□□□□□ -0.82
TSPAN3-208ENST00000560514 ATP6V1G1O75348 118 aa9.94□□□□□ -0.82
TSPAN3-208ENST00000560514 LCE2CQ5TA81 110 aa9.93□□□□□ -0.82
TSPAN3-208ENST00000560514 HSBP1O75506 76 aa9.91□□□□□ -0.82
TSPAN3-208ENST00000560514 MT1HP80294 61 aa9.91□□□□□ -0.82
TSPAN3-208ENST00000560514 XP32Q5T750 250 aa9.91□□□□□ -0.82
TSPAN3-208ENST00000560514 SMIM13P0DJ93 91 aa9.9□□□□□ -0.82
TSPAN3-208ENST00000560514 MAP1LC3CQ9BXW4 147 aa9.9□□□□□ -0.82
TSPAN3-208ENST00000560514 KCNQ1DNQ9H478 68 aa9.9□□□□□ -0.82
TSPAN3-208ENST00000560514 A0A0U1RRA0 63 aa9.89□□□□□ -0.83
TSPAN3-208ENST00000560514 MYMXA0A1B0GTQ4 84 aa9.89□□□□□ -0.83
TSPAN3-208ENST00000560514 BOD1L2Q8IYS8 172 aa9.89□□□□□ -0.83
TSPAN3-208ENST00000560514 LOC107984156A0A0G2JMH3 177 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 PRYO14603 147 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 SLC25A20O43772 301 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 SPRR1AP35321 89 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 MEIG1Q5JSS6 88 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 ARL17AQ8IVW1 177 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 MIR7-3HGQ8N6C7 128 aa9.88□□□□□ -0.83
TSPAN3-208ENST00000560514 RPS29P62273 56 aaKnown RBP9.87□□□□□ -0.83
TSPAN3-208ENST00000560514 Q8N377 158 aa9.86□□□□□ -0.83
TSPAN3-208ENST00000560514 LEPROTL1O95214 131 aa9.85□□□□□ -0.83
TSPAN3-208ENST00000560514 S100A12P80511 92 aa9.85□□□□□ -0.83
TSPAN3-208ENST00000560514 KRTAP4-16G5E9R7 235 aaPredicted RBP9.84□□□□□ -0.83
TSPAN3-208ENST00000560514 TRGC2P03986 189 aa9.84□□□□□ -0.83
TSPAN3-208ENST00000560514 PLNP26678 52 aa9.84□□□□□ -0.83
TSPAN3-208ENST00000560514 SMCR5Q8TEV8 140 aa9.84□□□□□ -0.83
TSPAN3-208ENST00000560514 IGLV9-49A0A0B4J1Y8 123 aa9.83□□□□□ -0.84
TSPAN3-208ENST00000560514 LEPROTO15243 131 aa9.83□□□□□ -0.84
TSPAN3-208ENST00000560514 MOBPQ13875 183 aa9.83□□□□□ -0.84
TSPAN3-208ENST00000560514 HSPB8Q9UJY1 196 aa9.83□□□□□ -0.84
TSPAN3-208ENST00000560514 TRBV10-2A0A0K0K1G8 114 aa9.82□□□□□ -0.84
TSPAN3-208ENST00000560514 KRTAP19-2Q3LHN2 52 aa9.82□□□□□ -0.84
TSPAN3-208ENST00000560514 GAGE2AQ6NT46 116 aa9.82□□□□□ -0.84
TSPAN3-208ENST00000560514 IGLV8-61A0A075B6I0 122 aa9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 ETDCA0A1B0GVM5 59 aa9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 M0R2T5 61 aa9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 LORP23490 312 aaPredicted RBP9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 NMUP48645 174 aa9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 KRTAP10-6P60371 365 aaPredicted RBP9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 SSBP3-AS1Q7Z2R9 100 aa9.81□□□□□ -0.84
TSPAN3-208ENST00000560514 TRBV10-3A0A0K0K1G6 114 aa9.8□□□□□ -0.84
TSPAN3-208ENST00000560514 NCR3O14931 201 aa9.8□□□□□ -0.84
TSPAN3-208ENST00000560514 SERF1AO75920 110 aa9.8□□□□□ -0.84
TSPAN3-208ENST00000560514 LINC00483Q53H64 154 aa9.8□□□□□ -0.84
TSPAN3-208ENST00000560514 HERVK_113P61574 105 aa9.79□□□□□ -0.84
TSPAN3-208ENST00000560514 PCOTHQ58A44 107 aa9.79□□□□□ -0.84
TSPAN3-208ENST00000560514 H0Y8G0 127 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 367.5 ms