RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DEFB105AQ8NG35 78 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 PDZD2O15018 2839 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 IGHV4-28A0A0C4DH34 117 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 SPAG11BQ08648 103 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 BAHCC1Q9P281 2608 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 HIGD2BQ4VC39 106 aa7.8□□□□□ -1.16
LDLR-208ENST00000558518 NANOS2P60321 138 aaKnown RBP7.8□□□□□ -1.16
LDLR-208ENST00000558518 F8WEM9 126 aa7.8□□□□□ -1.16
LDLR-208ENST00000558518 C1orf43Q9BWL3 253 aa7.79□□□□□ -1.16
LDLR-208ENST00000558518 PKIGQ9Y2B9 76 aa7.79□□□□□ -1.16
LDLR-208ENST00000558518 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.79□□□□□ -1.16
LDLR-208ENST00000558518 FAM19A3Q7Z5A8 133 aa7.79□□□□□ -1.16
LDLR-208ENST00000558518 IL17DQ8TAD2 202 aa7.79□□□□□ -1.16
LDLR-208ENST00000558518 MPLKIPQ8TAP9 179 aa7.79□□□□□ -1.16
LDLR-208ENST00000558518 Q8IZM0 81 aa7.78□□□□□ -1.16
LDLR-208ENST00000558518 LINC01547P58512 204 aaPredicted RBP7.78□□□□□ -1.16
LDLR-208ENST00000558518 DEFB113Q30KQ7 82 aa7.78□□□□□ -1.16
LDLR-208ENST00000558518 A0A0U1RQV1 116 aa7.77□□□□□ -1.17
LDLR-208ENST00000558518 Q6ZVQ6 151 aa7.77□□□□□ -1.17
LDLR-208ENST00000558518 PRO0255Q9UI72 69 aa7.77□□□□□ -1.17
LDLR-208ENST00000558518 CYSRT1A8MQ03 144 aa7.77□□□□□ -1.17
LDLR-208ENST00000558518 TRBV10-3A0A0K0K1G6 114 aa7.76□□□□□ -1.17
LDLR-208ENST00000558518 C3orf84H3BNL1 204 aa7.76□□□□□ -1.17
LDLR-208ENST00000558518 HELZ2Q9BYK8 2649 aaKnown RBP7.76□□□□□ -1.17
LDLR-208ENST00000558518 OBSCN-AS1Q96MR7 158 aa7.76□□□□□ -1.17
LDLR-208ENST00000558518 LINC00575Q6W349 94 aa7.75□□□□□ -1.17
LDLR-208ENST00000558518 TM2D3Q9BRN9 247 aa7.75□□□□□ -1.17
LDLR-208ENST00000558518 LRCOL1A6NCL2 159 aa7.75□□□□□ -1.17
LDLR-208ENST00000558518 RPS28P62857 69 aaKnown RBP7.74□□□□□ -1.17
LDLR-208ENST00000558518 CD164L2Q6UWJ8 174 aa7.74□□□□□ -1.17
LDLR-208ENST00000558518 PKD1L1Q8TDX9 2849 aa7.74□□□□□ -1.17
LDLR-208ENST00000558518 MRAPQ8TCY5 172 aa7.74□□□□□ -1.17
LDLR-208ENST00000558518 LINC00474Q9P2X8 69 aa7.74□□□□□ -1.17
LDLR-208ENST00000558518 NDUFC2O95298 119 aa7.73□□□□□ -1.17
LDLR-208ENST00000558518 Q6ZQT0 140 aa7.73□□□□□ -1.17
LDLR-208ENST00000558518 ZNF561-AS1K7EIQ3 104 aa7.73□□□□□ -1.17
LDLR-208ENST00000558518 LY6G6DO95868 133 aa7.73□□□□□ -1.17
LDLR-208ENST00000558518 BRK1Q8WUW1 75 aa7.73□□□□□ -1.17
LDLR-208ENST00000558518 Q5XG85 94 aa7.72□□□□□ -1.17
LDLR-208ENST00000558518 CSNK1G2-AS1Q8NCQ2 148 aa7.72□□□□□ -1.17
LDLR-208ENST00000558518 IGLV1-51P01701 117 aa7.72□□□□□ -1.17
LDLR-208ENST00000558518 KIAA0087Q14695 138 aa7.72□□□□□ -1.17
LDLR-208ENST00000558518 DIRC1Q969H9 104 aa7.72□□□□□ -1.17
LDLR-208ENST00000558518 FSHBP01225 129 aa7.71□□□□□ -1.17
LDLR-208ENST00000558518 ATP5EP2Q5VTU8 51 aa7.71□□□□□ -1.17
LDLR-208ENST00000558518 SMR3AQ99954 134 aa7.71□□□□□ -1.18
LDLR-208ENST00000558518 CELA1Q9UNI1 258 aa7.71□□□□□ -1.18
LDLR-208ENST00000558518 LINC00336Q6ZUF6 198 aa7.71□□□□□ -1.18
LDLR-208ENST00000558518 TRAV7A0A075B6U4 112 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 BPY2O14599 106 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 NOTCH1P46531 2555 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 H7BZZ5 65 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 CAMK2N2Q96S95 79 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 C19orf73Q9NVV2 129 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 TENM1Q9UKZ4 2725 aa7.7□□□□□ -1.18
LDLR-208ENST00000558518 MUC7Q8TAX7 377 aa7.69□□□□□ -1.18
LDLR-208ENST00000558518 PRR4Q16378 134 aa7.69□□□□□ -1.18
LDLR-208ENST00000558518 CMC4P56277 68 aaPredicted RBP7.69□□□□□ -1.18
LDLR-208ENST00000558518 COX7BP24311 80 aa7.68□□□□□ -1.18
LDLR-208ENST00000558518 ZNF73O43830 326 aaPredicted RBP7.67□□□□□ -1.18
LDLR-208ENST00000558518 A0A1B0GUV1 79 aa7.67□□□□□ -1.18
LDLR-208ENST00000558518 NREPQ16612 68 aa7.67□□□□□ -1.18
LDLR-208ENST00000558518 NBEAL1Q6ZS30 2694 aa7.67□□□□□ -1.18
LDLR-208ENST00000558518 MIFP14174 115 aa7.65□□□□□ -1.18
LDLR-208ENST00000558518 X6R8D5 127 aa7.65□□□□□ -1.18
LDLR-208ENST00000558518 COX17Q14061 63 aa7.65□□□□□ -1.18
LDLR-208ENST00000558518 LYPD5Q6UWN5 251 aa7.65□□□□□ -1.19
LDLR-208ENST00000558518 FAM30AQ9NZY2 134 aa7.65□□□□□ -1.19
LDLR-208ENST00000558518 SERP1Q9Y6X1 66 aa7.65□□□□□ -1.19
LDLR-208ENST00000558518 TRBV7-6A0A0J9YX20 115 aa7.64□□□□□ -1.19
LDLR-208ENST00000558518 C6orf48Q9UBA6 75 aa7.64□□□□□ -1.19
LDLR-208ENST00000558518 MAST4O15021 2626 aa7.63□□□□□ -1.19
LDLR-208ENST00000558518 FLNBO75369 2602 aaKnown RBP7.63□□□□□ -1.19
LDLR-208ENST00000558518 COL6A5A8TX70 2615 aa7.63□□□□□ -1.19
LDLR-208ENST00000558518 LINC00167Q96N53 147 aa7.63□□□□□ -1.19
LDLR-208ENST00000558518 RPL37AP8A6NKH3 93 aa7.63□□□□□ -1.19
LDLR-208ENST00000558518 IGKV2D-24A0A075B6R9 120 aa7.62□□□□□ -1.19
LDLR-208ENST00000558518 TMEM254Q8TBM7 123 aa7.62□□□□□ -1.19
LDLR-208ENST00000558518 HIGD2AQ9BW72 106 aa7.62□□□□□ -1.19
LDLR-208ENST00000558518 WFDC10BQ8IUB3 73 aa7.61□□□□□ -1.19
LDLR-208ENST00000558518 NDUFC2-KCTD14E9PQ53 114 aa7.6□□□□□ -1.19
LDLR-208ENST00000558518 Q6ZRU5 148 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 DEFB116Q30KQ4 102 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 NKAPP1Q8N9T2 125 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 RETNQ9HD89 108 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 SMIM26A0A096LP01 95 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 IGLV6-57P01721 117 aa7.59□□□□□ -1.19
LDLR-208ENST00000558518 FP248Q71RG6 208 aaPredicted RBP7.59□□□□□ -1.19
LDLR-208ENST00000558518 LOC110117498A0A087WWA1 95 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 A0A0G2JQZ4 141 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 A0A1W2PNN7 141 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 FAM229BQ4G0N7 80 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 TRRAPQ9Y4A5 3859 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 SPART-AS1P0CW21 52 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 STAB1Q9NY15 2570 aa7.58□□□□□ -1.2
LDLR-208ENST00000558518 FUSP35637 526 aaKnown RBP eCLIP7.57□□□□□ -1.2
LDLR-208ENST00000558518 PDE6GP18545 87 aa7.56□□□□□ -1.2
LDLR-208ENST00000558518 KLKP1Q107X0 134 aa7.56□□□□□ -1.2
LDLR-208ENST00000558518 LYRM9A8MSI8 78 aa7.56□□□□□ -1.2
LDLR-208ENST00000558518 KRTAP10-3P60369 221 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms