RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

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Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 A0A0J9YWU9 116 aa11.89□□□□□ -0.51
SYNE3-202ENST00000553340 IGHV4-30-4P0DP06 118 aa11.89□□□□□ -0.51
SYNE3-202ENST00000553340 GCN1Q92616 2671 aaKnown RBP11.89□□□□□ -0.51
SYNE3-202ENST00000553340 CYSRT1A8MQ03 144 aa11.89□□□□□ -0.51
SYNE3-202ENST00000553340 NDUFC2-KCTD14E9PQ53 114 aa11.88□□□□□ -0.51
SYNE3-202ENST00000553340 DAD1P61803 113 aa11.88□□□□□ -0.51
SYNE3-202ENST00000553340 H3BQ85 93 aa11.87□□□□□ -0.51
SYNE3-202ENST00000553340 DEFB135Q30KP9 77 aa11.87□□□□□ -0.51
SYNE3-202ENST00000553340 Q6ZQY7 126 aa11.87□□□□□ -0.51
SYNE3-202ENST00000553340 C5orf47Q569G3 176 aa11.87□□□□□ -0.51
SYNE3-202ENST00000553340 MTORP42345 2549 aa11.87□□□□□ -0.51
SYNE3-202ENST00000553340 PDE6GP18545 87 aa11.86□□□□□ -0.51
SYNE3-202ENST00000553340 LINC01547P58512 204 aaPredicted RBP11.86□□□□□ -0.51
SYNE3-202ENST00000553340 C20orf197Q8N268 126 aa11.86□□□□□ -0.51
SYNE3-202ENST00000553340 NBEAL2Q6ZNJ1 2754 aa11.86□□□□□ -0.51
SYNE3-202ENST00000553340 M0R2N4 97 aa11.85□□□□□ -0.51
SYNE3-202ENST00000553340 BCE1O60756 84 aa11.85□□□□□ -0.51
SYNE3-202ENST00000553340 HAMPP81172 84 aa11.85□□□□□ -0.51
SYNE3-202ENST00000553340 KRTAP10-3P60369 221 aa11.85□□□□□ -0.51
SYNE3-202ENST00000553340 Q6ZVQ6 151 aa11.85□□□□□ -0.51
SYNE3-202ENST00000553340 ACANP16112 2415 aa11.84□□□□□ -0.51
SYNE3-202ENST00000553340 OXTP01178 125 aa11.84□□□□□ -0.51
SYNE3-202ENST00000553340 LELP1Q5T871 98 aa11.84□□□□□ -0.51
SYNE3-202ENST00000553340 C9orf66Q5T8R8 295 aa11.83□□□□□ -0.52
SYNE3-202ENST00000553340 TRAV7A0A075B6U4 112 aa11.82□□□□□ -0.52
SYNE3-202ENST00000553340 DIRC1Q969H9 104 aa11.82□□□□□ -0.52
SYNE3-202ENST00000553340 KLK12Q9UKR0 248 aa11.82□□□□□ -0.52
SYNE3-202ENST00000553340 GVQW2A0A096LPI5 108 aaPredicted RBP11.82□□□□□ -0.52
SYNE3-202ENST00000553340 PRR34Q9NV39 138 aa11.82□□□□□ -0.52
SYNE3-202ENST00000553340 APOC4P55056 127 aa11.81□□□□□ -0.52
SYNE3-202ENST00000553340 CELA1Q9UNI1 258 aa11.8□□□□□ -0.52
SYNE3-202ENST00000553340 CXCL6P80162 114 aa11.8□□□□□ -0.52
SYNE3-202ENST00000553340 SPATA3Q8NHX4 192 aa11.79□□□□□ -0.52
SYNE3-202ENST00000553340 HTN3P15516 51 aa11.79□□□□□ -0.52
SYNE3-202ENST00000553340 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.79□□□□□ -0.52
SYNE3-202ENST00000553340 XAGE1AQ9HD64 81 aa11.79□□□□□ -0.52
SYNE3-202ENST00000553340 C6orf48Q9UBA6 75 aa11.78□□□□□ -0.52
SYNE3-202ENST00000553340 ZNF73O43830 326 aaPredicted RBP11.78□□□□□ -0.52
SYNE3-202ENST00000553340 COX7BP24311 80 aa11.77□□□□□ -0.53
SYNE3-202ENST00000553340 FAM236DA0A1B0GTK5 79 aa11.76□□□□□ -0.53
SYNE3-202ENST00000553340 SPART-AS1P0CW21 52 aa11.76□□□□□ -0.53
SYNE3-202ENST00000553340 FAM236CP0DP71 79 aa11.76□□□□□ -0.53
SYNE3-202ENST00000553340 MIFP14174 115 aa11.76□□□□□ -0.53
SYNE3-202ENST00000553340 Q8NAQ8 132 aa11.76□□□□□ -0.53
SYNE3-202ENST00000553340 TRAV10A0A0B4J240 114 aa11.75□□□□□ -0.53
SYNE3-202ENST00000553340 TRBV7-4A0A0J9YYF1 115 aa11.75□□□□□ -0.53
SYNE3-202ENST00000553340 KMT2BQ9UMN6 2715 aaPredicted RBP11.75□□□□□ -0.53
SYNE3-202ENST00000553340 ANK3Q12955 4377 aaKnown RBP11.74□□□□□ -0.53
SYNE3-202ENST00000553340 H7BZZ5 65 aa11.74□□□□□ -0.53
SYNE3-202ENST00000553340 ELOF1P60002 83 aaKnown RBP11.74□□□□□ -0.53
SYNE3-202ENST00000553340 TRBV7-6A0A0J9YX20 115 aa11.73□□□□□ -0.53
SYNE3-202ENST00000553340 KLKP1Q107X0 134 aa11.73□□□□□ -0.53
SYNE3-202ENST00000553340 Q5XG85 94 aa11.72□□□□□ -0.53
SYNE3-202ENST00000553340 PDZD2O15018 2839 aa11.71□□□□□ -0.53
SYNE3-202ENST00000553340 C4orf26Q17RF5 130 aa11.71□□□□□ -0.54
SYNE3-202ENST00000553340 VPREB1P12018 145 aa11.7□□□□□ -0.54
SYNE3-202ENST00000553340 CAMK2N2Q96S95 79 aa11.7□□□□□ -0.54
SYNE3-202ENST00000553340 SCXQ7RTU7 201 aa11.69□□□□□ -0.54
SYNE3-202ENST00000553340 M0R378 163 aa11.68□□□□□ -0.54
SYNE3-202ENST00000553340 HIGD2BQ4VC39 106 aa11.68□□□□□ -0.54
SYNE3-202ENST00000553340 SNURFQ9Y675 71 aa11.68□□□□□ -0.54
SYNE3-202ENST00000553340 SERP1Q9Y6X1 66 aa11.68□□□□□ -0.54
SYNE3-202ENST00000553340 HIVEP2P31629 2446 aa11.67□□□□□ -0.54
SYNE3-202ENST00000553340 EGFEM1PQ0D2K5 195 aa11.67□□□□□ -0.54
SYNE3-202ENST00000553340 SMR3AQ99954 134 aa11.67□□□□□ -0.54
SYNE3-202ENST00000553340 RMI2Q96E14 147 aa11.66□□□□□ -0.54
SYNE3-202ENST00000553340 HRCT1Q6UXD1 115 aa11.66□□□□□ -0.54
SYNE3-202ENST00000553340 EPM2AB3EWF7 344 aa11.64□□□□□ -0.55
SYNE3-202ENST00000553340 VWFP04275 2813 aa11.64□□□□□ -0.55
SYNE3-202ENST00000553340 LINC00528Q8N1L1 170 aa11.64□□□□□ -0.55
SYNE3-202ENST00000553340 TM2D3Q9BRN9 247 aa11.64□□□□□ -0.55
SYNE3-202ENST00000553340 F8WEM9 126 aa11.63□□□□□ -0.55
SYNE3-202ENST00000553340 Q6ZRU5 148 aa11.62□□□□□ -0.55
SYNE3-202ENST00000553340 WIPF1O43516 503 aa11.61□□□□□ -0.55
SYNE3-202ENST00000553340 NDUFC1O43677 76 aa11.61□□□□□ -0.55
SYNE3-202ENST00000553340 WFDC10BQ8IUB3 73 aa11.61□□□□□ -0.55
SYNE3-202ENST00000553340 KRTAP26-1Q6PEX3 210 aa11.6□□□□□ -0.55
SYNE3-202ENST00000553340 ITPR2Q14571 2701 aa11.59□□□□□ -0.55
SYNE3-202ENST00000553340 NREPQ16612 68 aa11.59□□□□□ -0.55
SYNE3-202ENST00000553340 BPY2O14599 106 aa11.59□□□□□ -0.55
SYNE3-202ENST00000553340 TENM4Q6N022 2769 aa11.59□□□□□ -0.55
SYNE3-202ENST00000553340 C15orf56Q8N910 161 aa11.58□□□□□ -0.56
SYNE3-202ENST00000553340 KPRPQ5T749 579 aaPredicted RBP11.56□□□□□ -0.56
SYNE3-202ENST00000553340 H3BNG1 76 aa11.55□□□□□ -0.56
SYNE3-202ENST00000553340 Q6ZRP5 223 aa11.55□□□□□ -0.56
SYNE3-202ENST00000553340 ERC2-IT1O76042 136 aa11.54□□□□□ -0.56
SYNE3-202ENST00000553340 Q8N9L7 120 aa11.54□□□□□ -0.56
SYNE3-202ENST00000553340 TMEM254Q8TBM7 123 aa11.54□□□□□ -0.56
SYNE3-202ENST00000553340 IGKV4-1P06312 121 aa11.54□□□□□ -0.56
SYNE3-202ENST00000553340 ATP5EP56381 51 aaPredicted RBP11.54□□□□□ -0.56
SYNE3-202ENST00000553340 C1orf43Q9BWL3 253 aa11.53□□□□□ -0.56
SYNE3-202ENST00000553340 SMIM26A0A096LP01 95 aa11.52□□□□□ -0.57
SYNE3-202ENST00000553340 F8WDY8 70 aa11.5□□□□□ -0.57
SYNE3-202ENST00000553340 NKAPP1Q8N9T2 125 aa11.5□□□□□ -0.57
SYNE3-202ENST00000553340 KCNQ1DNQ9H478 68 aa11.5□□□□□ -0.57
SYNE3-202ENST00000553340 C3orf84H3BNL1 204 aa11.5□□□□□ -0.57
SYNE3-202ENST00000553340 SYCNQ0VAF6 134 aa11.49□□□□□ -0.57
SYNE3-202ENST00000553340 DEFB105AQ8NG35 78 aa11.49□□□□□ -0.57
SYNE3-202ENST00000553340 NOTCH2Q04721 2471 aa11.48□□□□□ -0.57
SYNE3-202ENST00000553340 IGKV2D-24A0A075B6R9 120 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms