RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 J3KT08 172 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 GYPEP15421 78 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 HILS1P60008 231 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 RPS28P62857 69 aaKnown RBP3.72□□□□□ -1.81
LIMA1-212ENST00000552491 C9orf116Q5BN46 136 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-212ENST00000552491 Q8N814 137 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 WFDC9Q8NEX5 89 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 UPK3BQ9BT76 320 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 USP17L23D6RBM5 183 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 TMEM256-PLSCR3K7ERE1 68 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 NDUFC2O95298 119 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 KIAA0087Q14695 138 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 S100A7L2Q5SY68 101 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 KIR2DL5BQ8NHK3 375 aa3.72□□□□□ -1.81
LIMA1-212ENST00000552491 COX17Q14061 63 aa3.71□□□□□ -1.82
LIMA1-212ENST00000552491 IGLV10-54A0A075B6I4 117 aa3.71□□□□□ -1.82
LIMA1-212ENST00000552491 LINC00612Q8N6U2 182 aa3.71□□□□□ -1.82
LIMA1-212ENST00000552491 TMEM258P61165 79 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 ATP5EP2Q5VTU8 51 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 LYPD5Q6UWN5 251 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 FAM19A1Q7Z5A9 133 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 SPATA3Q8NHX4 192 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 KRTAP9-8Q9BYQ0 159 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 PDZD2O15018 2839 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 ITPR2Q14571 2701 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 HIVEP2P31629 2446 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 IGHV4-28A0A0C4DH34 117 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 LINC00269Q8N2A0 174 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 C16orf95Q9H693 158 aa3.7□□□□□ -1.82
LIMA1-212ENST00000552491 M0R2N4 97 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 OXTP01178 125 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 KRTAP1-1Q07627 177 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 CD164L2Q6UWJ8 174 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 FAM19A5Q7Z5A7 132 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-212ENST00000552491 PRO0255Q9UI72 69 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 X6R8D5 127 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 TRRAPQ9Y4A5 3859 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 TRBV10-3A0A0K0K1G6 114 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 RNASE1P07998 156 aaKnown RBP3.69□□□□□ -1.82
LIMA1-212ENST00000552491 C6orf99Q4VX62 202 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 C10orf25Q5T742 122 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 DPH3Q96FX2 82 aa3.69□□□□□ -1.82
LIMA1-212ENST00000552491 TRAV23DV6A0A075B6W5 121 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 DEFB4AO15263 64 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 ENHOQ6UWT2 76 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 C6orf223Q8N319 242 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 CHCHD10Q8WYQ3 142 aaPredicted RBP3.68□□□□□ -1.82
LIMA1-212ENST00000552491 UBL5Q9BZL1 73 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 UNC79Q9P2D8 2635 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 KRTAP10-3P60369 221 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 LINC00575Q6W349 94 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 DSCR8Q96T75 97 aa3.68□□□□□ -1.82
LIMA1-212ENST00000552491 UNQ6190/PRO20217Q6UXQ8 127 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 SMIM9A6NGZ8 99 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 ANGP03950 147 aaKnown RBP3.67□□□□□ -1.82
LIMA1-212ENST00000552491 RBM3P98179 157 aaKnown RBP3.67□□□□□ -1.82
LIMA1-212ENST00000552491 REG3AQ06141 175 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 LINC00482Q8N8I6 264 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 MUC7Q8TAX7 377 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 LOC110117498A0A087WWA1 95 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 ZNF561-AS1K7EIQ3 104 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 Q6ZQT0 140 aa3.67□□□□□ -1.82
LIMA1-212ENST00000552491 NOTCH2Q04721 2471 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 MAST4O15021 2626 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 LYRM9A8MSI8 78 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 NDUFC2-KCTD14E9PQ53 114 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 KRTAP19-4Q3LI73 84 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 C5orf47Q569G3 176 aa3.66□□□□□ -1.82
LIMA1-212ENST00000552491 TENM1Q9UKZ4 2725 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 A0A0J9YWU9 116 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 H3BQ85 93 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 BCE1O60756 84 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 IGLV6-57P01721 117 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 IGHV4-30-4P0DP06 118 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 LAMTOR3Q9UHA4 124 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 CELA1Q9UNI1 258 aa3.65□□□□□ -1.82
LIMA1-212ENST00000552491 CYSRT1A8MQ03 144 aa3.65□□□□□ -1.83
LIMA1-212ENST00000552491 HIVEP1P15822 2718 aa3.65□□□□□ -1.83
LIMA1-212ENST00000552491 PDE6GP18545 87 aa3.65□□□□□ -1.83
LIMA1-212ENST00000552491 DEFB135Q30KP9 77 aa3.65□□□□□ -1.83
LIMA1-212ENST00000552491 SPAG11BQ08648 103 aa3.64□□□□□ -1.83
LIMA1-212ENST00000552491 Q6ZQY7 126 aa3.64□□□□□ -1.83
LIMA1-212ENST00000552491 C20orf197Q8N268 126 aa3.64□□□□□ -1.83
LIMA1-212ENST00000552491 TRAV10A0A0B4J240 114 aa3.64□□□□□ -1.83
LIMA1-212ENST00000552491 LINC01547P58512 204 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-212ENST00000552491 C9orf66Q5T8R8 295 aa3.64□□□□□ -1.83
LIMA1-212ENST00000552491 PKD1L1Q8TDX9 2849 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 TRAV7A0A075B6U4 112 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 Q6ZVQ6 151 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 SMR3AQ99954 134 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 XAGE1AQ9HD64 81 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 GVQW2A0A096LPI5 108 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-212ENST00000552491 CXCL6P80162 114 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 HAMPP81172 84 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 C4orf26Q17RF5 130 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 Q5XG85 94 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 C6orf48Q9UBA6 75 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 KLK12Q9UKR0 248 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 ANK2Q01484 3957 aa3.63□□□□□ -1.83
LIMA1-212ENST00000552491 DAD1P61803 113 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms