RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 C22orf24Q9Y442 160 aa10.1□□□□□ -0.79
CHMP1A-209ENST00000550872 FAT1Q14517 4588 aa10.1□□□□□ -0.79
CHMP1A-209ENST00000550872 PLA2G2DQ9UNK4 145 aa10.09□□□□□ -0.79
CHMP1A-209ENST00000550872 IGKV2D-26A0A0A0MRZ7 120 aa10.08□□□□□ -0.8
CHMP1A-209ENST00000550872 UBE2BP63146 152 aa10.08□□□□□ -0.8
CHMP1A-209ENST00000550872 LBHQ53QV2 105 aaPredicted RBP10.08□□□□□ -0.8
CHMP1A-209ENST00000550872 MIR7-3HGQ8N6C7 128 aa10.08□□□□□ -0.8
CHMP1A-209ENST00000550872 PRR3P79522 188 aaKnown RBP10.07□□□□□ -0.8
CHMP1A-209ENST00000550872 NKAPP1Q8N9T2 125 aa10.07□□□□□ -0.8
CHMP1A-209ENST00000550872 FLG2Q5D862 2391 aaPredicted RBP10.06□□□□□ -0.8
CHMP1A-209ENST00000550872 ANKRD39Q53RE8 183 aa10.06□□□□□ -0.8
CHMP1A-209ENST00000550872 MRPL55Q7Z7F7 128 aaKnown RBP10.06□□□□□ -0.8
CHMP1A-209ENST00000550872 TP73-AS1Q9UF72 201 aa10.06□□□□□ -0.8
CHMP1A-209ENST00000550872 PSORS1C2Q9UIG4 136 aa10.06□□□□□ -0.8
CHMP1A-209ENST00000550872 IGLV5-37A0A075B6J1 123 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 A0A0J9YXY3 114 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 ZNF815PA8K554 130 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 SCGB1D1O95968 90 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 RPL24P83731 157 aaKnown RBP10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 KRTAP11-1Q8IUC1 163 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 TTTY13Q9BZ97 58 aa10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 TMA7Q9Y2S6 64 aaKnown RBP10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 SRRM2Q9UQ35 2752 aaKnown RBP10.05□□□□□ -0.8
CHMP1A-209ENST00000550872 VPREB1P12018 145 aa10.04□□□□□ -0.8
CHMP1A-209ENST00000550872 DAND5Q8N907 189 aa10.04□□□□□ -0.8
CHMP1A-209ENST00000550872 GAGE10A6NGK3 116 aa10.03□□□□□ -0.8
CHMP1A-209ENST00000550872 HNRNPA3P51991 378 aaKnown RBP10.03□□□□□ -0.8
CHMP1A-209ENST00000550872 C1orf137Q5JT78 98 aa10.03□□□□□ -0.8
CHMP1A-209ENST00000550872 LINC00167Q96N53 147 aa10.03□□□□□ -0.8
CHMP1A-209ENST00000550872 MYCBP2O75592 4640 aa10.03□□□□□ -0.8
CHMP1A-209ENST00000550872 HSBP1L1C9JCN9 74 aa10.02□□□□□ -0.81
CHMP1A-209ENST00000550872 BOD1L2Q8IYS8 172 aa10.02□□□□□ -0.81
CHMP1A-209ENST00000550872 Q8NDZ9 215 aa10.01□□□□□ -0.81
CHMP1A-209ENST00000550872 VPS13BQ7Z7G8 4022 aa10.01□□□□□ -0.81
CHMP1A-209ENST00000550872 RPL37AP8A6NKH3 93 aa10□□□□□ -0.81
CHMP1A-209ENST00000550872 ADAMTSL4-AS1Q5T5F5 129 aa10□□□□□ -0.81
CHMP1A-209ENST00000550872 MIEN1Q9BRT3 115 aa9.99□□□□□ -0.81
CHMP1A-209ENST00000550872 LOC107984156A0A0G2JMH3 177 aa9.98□□□□□ -0.81
CHMP1A-209ENST00000550872 TIMM17BO60830 172 aa9.98□□□□□ -0.81
CHMP1A-209ENST00000550872 SCGB1D4Q6XE38 83 aa9.98□□□□□ -0.81
CHMP1A-209ENST00000550872 PCP2Q8IVA1 136 aa9.98□□□□□ -0.81
CHMP1A-209ENST00000550872 ARL17AQ8IVW1 177 aa9.98□□□□□ -0.81
CHMP1A-209ENST00000550872 M0R378 163 aa9.97□□□□□ -0.81
CHMP1A-209ENST00000550872 NPC2P61916 151 aa9.97□□□□□ -0.81
CHMP1A-209ENST00000550872 LITAFQ99732 161 aa9.97□□□□□ -0.81
CHMP1A-209ENST00000550872 IGKV2-28A0A075B6P5 120 aa9.96□□□□□ -0.82
CHMP1A-209ENST00000550872 IGKV2D-28P01615 120 aa9.96□□□□□ -0.82
CHMP1A-209ENST00000550872 IGLV7-43P04211 117 aa9.96□□□□□ -0.82
CHMP1A-209ENST00000550872 NCR3O14931 201 aa9.95□□□□□ -0.82
CHMP1A-209ENST00000550872 SRSF9Q13242 221 aaKnown RBP eCLIP9.95□□□□□ -0.82
CHMP1A-209ENST00000550872 IGLV1-50A0A075B6I6 118 aa9.94□□□□□ -0.82
CHMP1A-209ENST00000550872 JOSD1Q15040 202 aaPredicted RBP9.94□□□□□ -0.82
CHMP1A-209ENST00000550872 SPINK6Q6UWN8 80 aa9.94□□□□□ -0.82
CHMP1A-209ENST00000550872 SOSTDC1Q6X4U4 206 aa9.94□□□□□ -0.82
CHMP1A-209ENST00000550872 EIF4EBP3O60516 100 aaPredicted RBP9.93□□□□□ -0.82
CHMP1A-209ENST00000550872 LINC00308Q8TCZ7 52 aa9.93□□□□□ -0.82
CHMP1A-209ENST00000550872 TMEM238C9JI98 176 aa9.92□□□□□ -0.82
CHMP1A-209ENST00000550872 BCE1O60756 84 aa9.91□□□□□ -0.82
CHMP1A-209ENST00000550872 NDUFC2O95298 119 aa9.91□□□□□ -0.82
CHMP1A-209ENST00000550872 REG3GQ6UW15 175 aa9.9□□□□□ -0.82
CHMP1A-209ENST00000550872 SPANXDQ9BXN6 97 aa9.9□□□□□ -0.82
CHMP1A-209ENST00000550872 SPANXB1Q9NS25 103 aaPredicted RBP9.9□□□□□ -0.82
CHMP1A-209ENST00000550872 SPANXCQ9NY87 97 aa9.9□□□□□ -0.82
CHMP1A-209ENST00000550872 TRBV10-2A0A0K0K1G8 114 aa9.89□□□□□ -0.83
CHMP1A-209ENST00000550872 DIRC1Q969H9 104 aa9.89□□□□□ -0.83
CHMP1A-209ENST00000550872 TRBV10-3A0A0K0K1G6 114 aa9.88□□□□□ -0.83
CHMP1A-209ENST00000550872 ZNF861PO60384 105 aa9.88□□□□□ -0.83
CHMP1A-209ENST00000550872 VAMP8Q9BV40 100 aa9.88□□□□□ -0.83
CHMP1A-209ENST00000550872 TMEM126AQ9H061 195 aa9.88□□□□□ -0.83
CHMP1A-209ENST00000550872 PAM16Q9Y3D7 125 aa9.88□□□□□ -0.83
CHMP1A-209ENST00000550872 KRTAP29-1A8MX34 341 aaPredicted RBP9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 OXTP01178 125 aa9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 IFITM1P13164 125 aa9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 RPL28P46779 137 aaKnown RBP9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 SPATA45Q537H7 98 aa9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 Q6ZVH6 145 aa9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 COPS9Q8WXC6 57 aa9.87□□□□□ -0.83
CHMP1A-209ENST00000550872 COX8AP10176 69 aa9.86□□□□□ -0.83
CHMP1A-209ENST00000550872 DDTP30046 118 aa9.86□□□□□ -0.83
CHMP1A-209ENST00000550872 UBE2AP49459 152 aa9.86□□□□□ -0.83
CHMP1A-209ENST00000550872 PYY3Q5JQD4 70 aa9.86□□□□□ -0.83
CHMP1A-209ENST00000550872 S100A7L2Q5SY68 101 aa9.86□□□□□ -0.83
CHMP1A-209ENST00000550872 H0Y9J4 135 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 J3QL48 77 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 PRYO14603 147 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 S100A12P80511 92 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 FAM19A1Q7Z5A9 133 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 MUSTN1Q8IVN3 82 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 KCNQ1DNQ9H478 68 aa9.85□□□□□ -0.83
CHMP1A-209ENST00000550872 C14orf144Q96I85 54 aa9.84□□□□□ -0.83
CHMP1A-209ENST00000550872 DLEU1O43261 78 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 IGLV6-57P01721 117 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 PRLHP81277 87 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 LINC00518Q8N0U6 118 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 OR13C6PQ8NH95 151 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 PPDPFQ9H3Y8 114 aa9.82□□□□□ -0.84
CHMP1A-209ENST00000550872 KRTAP13-1Q8IUC0 172 aa9.81□□□□□ -0.84
CHMP1A-209ENST00000550872 PKHD1L1Q86WI1 4243 aa9.8□□□□□ -0.84
CHMP1A-209ENST00000550872 ETDCA0A1B0GVM5 59 aa9.79□□□□□ -0.84
CHMP1A-209ENST00000550872 SPRR1AP35321 89 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms