RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 RPL24P83731 157 aaKnown RBP13.45□□□□□ -0.26
NEK3-202ENST00000550841 TIMM17BO60830 172 aa13.44□□□□□ -0.26
NEK3-202ENST00000550841 LBHQ53QV2 105 aaPredicted RBP13.44□□□□□ -0.26
NEK3-202ENST00000550841 M0QXV9 152 aa13.43□□□□□ -0.26
NEK3-202ENST00000550841 SERTAD4-AS1Q5TG53 156 aa13.43□□□□□ -0.26
NEK3-202ENST00000550841 TTTY13Q9BZ97 58 aa13.43□□□□□ -0.26
NEK3-202ENST00000550841 TP73-AS1Q9UF72 201 aa13.43□□□□□ -0.26
NEK3-202ENST00000550841 C22orf24Q9Y442 160 aa13.43□□□□□ -0.26
NEK3-202ENST00000550841 Q5VSD8 79 aa13.42□□□□□ -0.26
NEK3-202ENST00000550841 SCGB1D4Q6XE38 83 aa13.42□□□□□ -0.26
NEK3-202ENST00000550841 PHF5AQ7RTV0 110 aaKnown RBP13.42□□□□□ -0.26
NEK3-202ENST00000550841 KRTAP7-1Q8IUC3 87 aa13.42□□□□□ -0.26
NEK3-202ENST00000550841 IGLV5-37A0A075B6J1 123 aa13.41□□□□□ -0.26
NEK3-202ENST00000550841 NKAPP1Q8N9T2 125 aa13.41□□□□□ -0.26
NEK3-202ENST00000550841 RPL37AP61513 92 aaKnown RBP13.4□□□□□ -0.26
NEK3-202ENST00000550841 PCP2Q8IVA1 136 aa13.4□□□□□ -0.26
NEK3-202ENST00000550841 LOC107984156A0A0G2JMH3 177 aa13.39□□□□□ -0.27
NEK3-202ENST00000550841 INAFM2P0DMQ5 153 aa13.39□□□□□ -0.27
NEK3-202ENST00000550841 ARL17AQ8IVW1 177 aa13.39□□□□□ -0.27
NEK3-202ENST00000550841 MIEN1Q9BRT3 115 aa13.39□□□□□ -0.27
NEK3-202ENST00000550841 UBE2BP63146 152 aa13.38□□□□□ -0.27
NEK3-202ENST00000550841 MRPL55Q7Z7F7 128 aaKnown RBP13.38□□□□□ -0.27
NEK3-202ENST00000550841 DAND5Q8N907 189 aa13.38□□□□□ -0.27
NEK3-202ENST00000550841 VAMP8Q9BV40 100 aa13.38□□□□□ -0.27
NEK3-202ENST00000550841 VPREB1P12018 145 aa13.37□□□□□ -0.27
NEK3-202ENST00000550841 ADAMTSL4-AS1Q5T5F5 129 aa13.37□□□□□ -0.27
NEK3-202ENST00000550841 BOD1L2Q8IYS8 172 aa13.37□□□□□ -0.27
NEK3-202ENST00000550841 TMEM238C9JI98 176 aa13.36□□□□□ -0.27
NEK3-202ENST00000550841 PYY3Q5JQD4 70 aa13.35□□□□□ -0.27
NEK3-202ENST00000550841 LITAFQ99732 161 aa13.35□□□□□ -0.27
NEK3-202ENST00000550841 COPS9Q8WXC6 57 aa13.34□□□□□ -0.27
NEK3-202ENST00000550841 PAM16Q9Y3D7 125 aa13.34□□□□□ -0.27
NEK3-202ENST00000550841 COX8AP10176 69 aa13.33□□□□□ -0.28
NEK3-202ENST00000550841 SPATA45Q537H7 98 aa13.33□□□□□ -0.28
NEK3-202ENST00000550841 Q6ZVH6 145 aa13.33□□□□□ -0.28
NEK3-202ENST00000550841 LINC00167Q96N53 147 aa13.33□□□□□ -0.28
NEK3-202ENST00000550841 SPANXDQ9BXN6 97 aa13.32□□□□□ -0.28
NEK3-202ENST00000550841 SPANXCQ9NY87 97 aa13.32□□□□□ -0.28
NEK3-202ENST00000550841 M0R378 163 aa13.31□□□□□ -0.28
NEK3-202ENST00000550841 LINC00308Q8TCZ7 52 aa13.31□□□□□ -0.28
NEK3-202ENST00000550841 DLEU1O43261 78 aa13.3□□□□□ -0.28
NEK3-202ENST00000550841 NDUFC2O95298 119 aa13.3□□□□□ -0.28
NEK3-202ENST00000550841 PRR3P79522 188 aaKnown RBP13.3□□□□□ -0.28
NEK3-202ENST00000550841 PSORS1C2Q9UIG4 136 aa13.3□□□□□ -0.28
NEK3-202ENST00000550841 GAGE10A6NGK3 116 aa13.29□□□□□ -0.28
NEK3-202ENST00000550841 IFITM1P13164 125 aa13.29□□□□□ -0.28
NEK3-202ENST00000550841 NPC2P61916 151 aa13.29□□□□□ -0.28
NEK3-202ENST00000550841 Q8NDZ9 215 aa13.29□□□□□ -0.28
NEK3-202ENST00000550841 FAT1Q14517 4588 aa13.29□□□□□ -0.28
NEK3-202ENST00000550841 RPL37AP8A6NKH3 93 aa13.27□□□□□ -0.29
NEK3-202ENST00000550841 KRTAP10-4P60372 401 aaPredicted RBP13.27□□□□□ -0.29
NEK3-202ENST00000550841 SOSTDC1Q6X4U4 206 aa13.27□□□□□ -0.29
NEK3-202ENST00000550841 TRBV10-2A0A0K0K1G8 114 aa13.26□□□□□ -0.29
NEK3-202ENST00000550841 S100A12P80511 92 aa13.26□□□□□ -0.29
NEK3-202ENST00000550841 SRSF9Q13242 221 aaKnown RBP eCLIP13.26□□□□□ -0.29
NEK3-202ENST00000550841 C1orf137Q5JT78 98 aa13.26□□□□□ -0.29
NEK3-202ENST00000550841 C14orf144Q96I85 54 aa13.26□□□□□ -0.29
NEK3-202ENST00000550841 PPDPFQ9H3Y8 114 aa13.26□□□□□ -0.29
NEK3-202ENST00000550841 SPANXB1Q9NS25 103 aaPredicted RBP13.26□□□□□ -0.29
NEK3-202ENST00000550841 IGLV1-50A0A075B6I6 118 aa13.25□□□□□ -0.29
NEK3-202ENST00000550841 KRTAP11-1Q8IUC1 163 aa13.25□□□□□ -0.29
NEK3-202ENST00000550841 NCR3O14931 201 aa13.24□□□□□ -0.29
NEK3-202ENST00000550841 SLC25A34Q6PIV7 304 aa13.24□□□□□ -0.29
NEK3-202ENST00000550841 IGKV2-28A0A075B6P5 120 aa13.22□□□□□ -0.29
NEK3-202ENST00000550841 EIF4EBP3O60516 100 aaPredicted RBP13.22□□□□□ -0.29
NEK3-202ENST00000550841 IGKV2D-28P01615 120 aa13.22□□□□□ -0.29
NEK3-202ENST00000550841 MUSTN1Q8IVN3 82 aa13.21□□□□□ -0.29
NEK3-202ENST00000550841 LINC00518Q8N0U6 118 aa13.21□□□□□ -0.29
NEK3-202ENST00000550841 VPS13BQ7Z7G8 4022 aa13.21□□□□□ -0.3
NEK3-202ENST00000550841 IGLV7-43P04211 117 aa13.19□□□□□ -0.3
NEK3-202ENST00000550841 S100A7L2Q5SY68 101 aa13.19□□□□□ -0.3
NEK3-202ENST00000550841 BCE1O60756 84 aa13.18□□□□□ -0.3
NEK3-202ENST00000550841 REG3GQ6UW15 175 aa13.18□□□□□ -0.3
NEK3-202ENST00000550841 HIGD1BQ9P298 99 aa13.18□□□□□ -0.3
NEK3-202ENST00000550841 CBY1Q9Y3M2 126 aa13.18□□□□□ -0.3
NEK3-202ENST00000550841 HERC1Q15751 4861 aa13.18□□□□□ -0.3
NEK3-202ENST00000550841 DDTP30046 118 aa13.17□□□□□ -0.3
NEK3-202ENST00000550841 SPINK6Q6UWN8 80 aa13.17□□□□□ -0.3
NEK3-202ENST00000550841 HIST1H4GQ99525 98 aa13.17□□□□□ -0.3
NEK3-202ENST00000550841 TRBV10-3A0A0K0K1G6 114 aa13.16□□□□□ -0.3
NEK3-202ENST00000550841 KCNQ1DNQ9H478 68 aa13.16□□□□□ -0.3
NEK3-202ENST00000550841 PRYO14603 147 aa13.15□□□□□ -0.3
NEK3-202ENST00000550841 SMIM6P0DI80 62 aa13.15□□□□□ -0.3
NEK3-202ENST00000550841 LOC105371267A0A1B0GV96 52 aa13.14□□□□□ -0.31
NEK3-202ENST00000550841 IGLV6-57P01721 117 aa13.14□□□□□ -0.31
NEK3-202ENST00000550841 TMEM126AQ9H061 195 aa13.14□□□□□ -0.31
NEK3-202ENST00000550841 OR13C6PQ8NH95 151 aa13.13□□□□□ -0.31
NEK3-202ENST00000550841 ZNF861PO60384 105 aa13.12□□□□□ -0.31
NEK3-202ENST00000550841 RPL28P46779 137 aaKnown RBP13.12□□□□□ -0.31
NEK3-202ENST00000550841 HNRNPA3P51991 378 aaKnown RBP13.12□□□□□ -0.31
NEK3-202ENST00000550841 J3QL48 77 aa13.11□□□□□ -0.31
NEK3-202ENST00000550841 UBE2AP49459 152 aa13.11□□□□□ -0.31
NEK3-202ENST00000550841 UQCR10Q9UDW1 63 aa13.11□□□□□ -0.31
NEK3-202ENST00000550841 SRRM2Q9UQ35 2752 aaKnown RBP13.11□□□□□ -0.31
NEK3-202ENST00000550841 TAL2Q16559 108 aa13.1□□□□□ -0.31
NEK3-202ENST00000550841 DIRC1Q969H9 104 aa13.1□□□□□ -0.31
NEK3-202ENST00000550841 C2orf91Q6ZV80 131 aa13.09□□□□□ -0.31
NEK3-202ENST00000550841 FAM19A1Q7Z5A9 133 aa13.09□□□□□ -0.31
NEK3-202ENST00000550841 DMBT1Q9UGM3 2413 aaPredicted RBP13.09□□□□□ -0.31
NEK3-202ENST00000550841 TRAV13-2A0A0B4J235 113 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms