RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440		A0A096LNJ9	63 aa		4.68	□□□□□ -1.66
SNHG1-223	ENST00000545440	HBD	P02042	147 aa		4.68	□□□□□ -1.66
SNHG1-223	ENST00000545440	IGLV7-43	P04211	117 aa		4.68	□□□□□ -1.66
SNHG1-223	ENST00000545440	COX7B2	Q8TF08	81 aa		4.68	□□□□□ -1.66
SNHG1-223	ENST00000545440		H3BRM9	83 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	LINC00614	P0C842	121 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	IGLC3	P0DOY3	106 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	RAB5B	P61020	215 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	UBE2B	P63146	152 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	KRTAP11-1	Q8IUC1	163 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	DIRC1	Q969H9	104 aa		4.67	□□□□□ -1.66
SNHG1-223	ENST00000545440	HMCN2	Q8NDA2	5059 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440		H0Y9J4	135 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	ATP5L	O75964	103 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	SPINK8	P0C7L1	97 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	KRTAP10-8	P60410	259 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	YPEL4	Q96NS1	127 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	XAGE1A	Q9HD64	81 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	TP73-AS1	Q9UF72	201 aa		4.66	□□□□□ -1.66
SNHG1-223	ENST00000545440	LBH	Q53QV2	105 aa	Predicted RBP	4.65	□□□□□ -1.67
SNHG1-223	ENST00000545440	NUPR1	O60356	82 aa		4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	ZNF22	P17026	224 aa	Predicted RBP	4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	NDUFA6	P56556	154 aa		4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	PMCHL1	Q16048	86 aa		4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	SFTA2	Q6UW10	78 aa		4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	MRPL55	Q7Z7F7	128 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	CHCHD1	Q96BP2	118 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	C22orf24	Q9Y442	160 aa		4.64	□□□□□ -1.67
SNHG1-223	ENST00000545440	SMIM29	Q86T20	159 aa		4.63	□□□□□ -1.67
SNHG1-223	ENST00000545440	IGLV1-50	A0A075B6I6	118 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	C11orf86	A6NJI1	115 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	ZNF861P	O60384	105 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	KRTAP1-4	P0C5Y4	121 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	COX17	Q14061	63 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	BAGE3	Q86Y29	109 aa		4.62	□□□□□ -1.67
SNHG1-223	ENST00000545440	TRAV12-1	A0A0B4J245	112 aa		4.61	□□□□□ -1.67
SNHG1-223	ENST00000545440	LINC01547	P58512	204 aa	Predicted RBP	4.61	□□□□□ -1.67
SNHG1-223	ENST00000545440	TMEM170B	Q5T4T1	132 aa		4.61	□□□□□ -1.67
SNHG1-223	ENST00000545440	CBLN2	Q8IUK8	224 aa		4.61	□□□□□ -1.67
SNHG1-223	ENST00000545440	ERG28	Q9UKR5	140 aa		4.61	□□□□□ -1.67
SNHG1-223	ENST00000545440	C5orf52	A6NGY3	159 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	BCE1	O60756	84 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	HSBP1	O75506	76 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	RPL13A	P40429	203 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	RPL28	P46779	137 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	NKAPP1	Q8N9T2	125 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	IFI27L1	Q96BM0	104 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	LINC00167	Q96N53	147 aa		4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.6	□□□□□ -1.67
SNHG1-223	ENST00000545440	PFN2	P35080	140 aa		4.59	□□□□□ -1.67
SNHG1-223	ENST00000545440	ZNF625	Q96I27	306 aa	Predicted RBP	4.59	□□□□□ -1.67
SNHG1-223	ENST00000545440	SND1-IT1	Q9HBX3	110 aa		4.59	□□□□□ -1.67
SNHG1-223	ENST00000545440	TMEM223	A0PJW6	202 aa		4.58	□□□□□ -1.68
SNHG1-223	ENST00000545440	RPL37AP8	A6NKH3	93 aa		4.58	□□□□□ -1.68
SNHG1-223	ENST00000545440	TRGC2	P03986	189 aa		4.57	□□□□□ -1.68
SNHG1-223	ENST00000545440	KRTAP13-1	Q8IUC0	172 aa		4.57	□□□□□ -1.68
SNHG1-223	ENST00000545440	FAM19A2	Q8N3H0	131 aa		4.57	□□□□□ -1.68
SNHG1-223	ENST00000545440	LRP2	P98164	4655 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	UBR4	Q5T4S7	5183 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	IGKV2-28	A0A075B6P5	120 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	SERF1A	O75920	110 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	LEPROTL1	O95214	131 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	IGKV2D-28	P01615	120 aa		4.56	□□□□□ -1.68
SNHG1-223	ENST00000545440	SCO1	O75880	301 aa		4.55	□□□□□ -1.68
SNHG1-223	ENST00000545440	UBE2A	P49459	152 aa		4.55	□□□□□ -1.68
SNHG1-223	ENST00000545440	HERV-K104	P63124	156 aa		4.55	□□□□□ -1.68
SNHG1-223	ENST00000545440	SLC7A5P1	Q8MH63	180 aa		4.55	□□□□□ -1.68
SNHG1-223	ENST00000545440		A4D1N5	150 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	COLCA2	A8K830	154 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	LINC00587	B1AMM8	73 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	PLN	P26678	52 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	LINC00158	P58513	81 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440		Q8NDZ9	215 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	TMEM126A	Q9H061	195 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440	HSPB8	Q9UJY1	196 aa		4.54	□□□□□ -1.68
SNHG1-223	ENST00000545440		A0A087X002	238 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	TMEM238	C9JI98	176 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440		H0Y8G0	127 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440		M0R378	163 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	CRYGA	P11844	174 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	PRLH	P81277	87 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	FAM229B	Q4G0N7	80 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	MEIG1	Q5JSS6	88 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	NDUFA12	Q9UI09	145 aa		4.53	□□□□□ -1.68
SNHG1-223	ENST00000545440	IGKV2D-26	A0A0A0MRZ7	120 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440		A0A0U1RRA0	63 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	MYMX	A0A1B0GTQ4	84 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	ATP6V1G1	O75348	118 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	DPM2	O94777	84 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	SMIM13	P0DJ93	91 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	MT3	P25713	68 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	FAM19A1	Q7Z5A9	133 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	MIR7-3HG	Q8N6C7	128 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	PLEKHB2	Q96CS7	222 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	MAP1LC3C	Q9BXW4	147 aa		4.52	□□□□□ -1.69
SNHG1-223	ENST00000545440	LEPROT	O15243	131 aa		4.51	□□□□□ -1.69
SNHG1-223	ENST00000545440	NMU	P48645	174 aa		4.51	□□□□□ -1.69
SNHG1-223	ENST00000545440	TSPEAR-AS2	P59090	65 aa		4.51	□□□□□ -1.69
SNHG1-223	ENST00000545440	HERVK_113	P61574	105 aa		4.51	□□□□□ -1.69
SNHG1-223	ENST00000545440	LCE1A	Q5T7P2	110 aa		4.51	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms