RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CBLN2Q8IUK8 224 aa8.61□□□□□ -1.03
VPS28-215ENST00000531924 MUC2Q02817 5179 aa8.6□□□□□ -1.03
VPS28-215ENST00000531924 RETNLBQ9BQ08 111 aa8.6□□□□□ -1.03
VPS28-215ENST00000531924 CHTOPQ9Y3Y2 248 aaKnown RBP8.6□□□□□ -1.03
VPS28-215ENST00000531924 M0R378 163 aa8.59□□□□□ -1.03
VPS28-215ENST00000531924 URB1-AS1Q96HZ7 61 aa8.59□□□□□ -1.03
VPS28-215ENST00000531924 HIGD2AQ9BW72 106 aa8.59□□□□□ -1.03
VPS28-215ENST00000531924 NDUFA5Q16718 116 aa8.58□□□□□ -1.04
VPS28-215ENST00000531924 A0A0U1RRA0 63 aa8.57□□□□□ -1.04
VPS28-215ENST00000531924 PLEKHB2Q96CS7 222 aa8.57□□□□□ -1.04
VPS28-215ENST00000531924 CDIP1Q9H305 208 aa8.57□□□□□ -1.04
VPS28-215ENST00000531924 APOC3P02656 99 aa8.56□□□□□ -1.04
VPS28-215ENST00000531924 IGLV7-46A0A075B6I9 117 aa8.55□□□□□ -1.04
VPS28-215ENST00000531924 SNAPINO95295 136 aa8.55□□□□□ -1.04
VPS28-215ENST00000531924 Q8NDZ9 215 aa8.55□□□□□ -1.04
VPS28-215ENST00000531924 CTAG1AP78358 180 aa8.54□□□□□ -1.04
VPS28-215ENST00000531924 C4orf48Q5BLP8 95 aa8.54□□□□□ -1.04
VPS28-215ENST00000531924 MEIG1Q5JSS6 88 aa8.54□□□□□ -1.04
VPS28-215ENST00000531924 SVBPQ8N300 66 aa8.54□□□□□ -1.04
VPS28-215ENST00000531924 IFI27L1Q96BM0 104 aa8.54□□□□□ -1.04
VPS28-215ENST00000531924 ZNF706Q9Y5V0 76 aaPredicted RBP8.54□□□□□ -1.04
VPS28-215ENST00000531924 TMEM223A0PJW6 202 aa8.53□□□□□ -1.04
VPS28-215ENST00000531924 BOD1L2Q8IYS8 172 aa8.53□□□□□ -1.04
VPS28-215ENST00000531924 CHCHD1Q96BP2 118 aaKnown RBP8.53□□□□□ -1.04
VPS28-215ENST00000531924 TRAV12-1A0A0B4J245 112 aa8.52□□□□□ -1.05
VPS28-215ENST00000531924 SMIM13P0DJ93 91 aa8.52□□□□□ -1.05
VPS28-215ENST00000531924 SPAG11AQ6PDA7 123 aa8.52□□□□□ -1.05
VPS28-215ENST00000531924 C3orf22Q8N5N4 141 aa8.52□□□□□ -1.05
VPS28-215ENST00000531924 LINC00587B1AMM8 73 aa8.51□□□□□ -1.05
VPS28-215ENST00000531924 HERV-K104P63124 156 aa8.51□□□□□ -1.05
VPS28-215ENST00000531924 S100A12P80511 92 aa8.51□□□□□ -1.05
VPS28-215ENST00000531924 SPRR4Q96PI1 79 aa8.51□□□□□ -1.05
VPS28-215ENST00000531924 PRYO14603 147 aa8.5□□□□□ -1.05
VPS28-215ENST00000531924 NCR3O14931 201 aa8.5□□□□□ -1.05
VPS28-215ENST00000531924 TPRXLQ17RH7 258 aa8.5□□□□□ -1.05
VPS28-215ENST00000531924 MAP1LC3CQ9BXW4 147 aa8.5□□□□□ -1.05
VPS28-215ENST00000531924 ETDCA0A1B0GVM5 59 aa8.49□□□□□ -1.05
VPS28-215ENST00000531924 HSBP1O75506 76 aa8.49□□□□□ -1.05
VPS28-215ENST00000531924 MIR7-3HGQ8N6C7 128 aa8.49□□□□□ -1.05
VPS28-215ENST00000531924 MYMXA0A1B0GTQ4 84 aa8.48□□□□□ -1.05
VPS28-215ENST00000531924 H0Y8G0 127 aa8.48□□□□□ -1.05
VPS28-215ENST00000531924 PPDPFQ9H3Y8 114 aa8.48□□□□□ -1.05
VPS28-215ENST00000531924 NDUFA12Q9UI09 145 aa8.48□□□□□ -1.05
VPS28-215ENST00000531924 LINC00337Q8N6G1 96 aa8.47□□□□□ -1.05
VPS28-215ENST00000531924 SMCR5Q8TEV8 140 aa8.46□□□□□ -1.06
VPS28-215ENST00000531924 KCNQ1DNQ9H478 68 aa8.46□□□□□ -1.06
VPS28-215ENST00000531924 FAM19A2Q8N3H0 131 aa8.45□□□□□ -1.06
VPS28-215ENST00000531924 DAND5Q8N907 189 aa8.44□□□□□ -1.06
VPS28-215ENST00000531924 Q8NBF4 154 aa8.44□□□□□ -1.06
VPS28-215ENST00000531924 TRBV10-3A0A0K0K1G6 114 aa8.43□□□□□ -1.06
VPS28-215ENST00000531924 FP248Q71RG6 208 aaPredicted RBP8.43□□□□□ -1.06
VPS28-215ENST00000531924 SPRR1AP35321 89 aa8.42□□□□□ -1.06
VPS28-215ENST00000531924 MIEN1Q9BRT3 115 aa8.42□□□□□ -1.06
VPS28-215ENST00000531924 LEPROTL1O95214 131 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 SPINK1P00995 79 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 PLNP26678 52 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 HERVK_113P61574 105 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 GAGE2AQ6NT46 116 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 YPEL4Q96NS1 127 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 FAT4Q6V0I7 4981 aa8.41□□□□□ -1.06
VPS28-215ENST00000531924 LEPROTO15243 131 aa8.4□□□□□ -1.06
VPS28-215ENST00000531924 DDTP30046 118 aa8.4□□□□□ -1.06
VPS28-215ENST00000531924 S100A7L2Q5SY68 101 aa8.39□□□□□ -1.07
VPS28-215ENST00000531924 HSPB8Q9UJY1 196 aa8.39□□□□□ -1.07
VPS28-215ENST00000531924 IGLV9-49A0A0B4J1Y8 123 aa8.38□□□□□ -1.07
VPS28-215ENST00000531924 TRBV10-2A0A0K0K1G8 114 aa8.38□□□□□ -1.07
VPS28-215ENST00000531924 B5MCH6 92 aa8.38□□□□□ -1.07
VPS28-215ENST00000531924 KRTAP4-16G5E9R7 235 aaPredicted RBP8.38□□□□□ -1.07
VPS28-215ENST00000531924 J3QQQ9 107 aa8.38□□□□□ -1.07
VPS28-215ENST00000531924 LGALS3P17931 250 aaKnown RBP8.38□□□□□ -1.07
VPS28-215ENST00000531924 DPM2O94777 84 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 TRGC2P03986 189 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 TSPEAR-AS2P59090 65 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 MOBPQ13875 183 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 LINC00483Q53H64 154 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 SPANXB1Q9NS25 103 aaPredicted RBP8.37□□□□□ -1.07
VPS28-215ENST00000531924 MUC17Q685J3 4493 aa8.37□□□□□ -1.07
VPS28-215ENST00000531924 SERF1AO75920 110 aa8.36□□□□□ -1.07
VPS28-215ENST00000531924 FABP4P15090 132 aa8.36□□□□□ -1.07
VPS28-215ENST00000531924 NMUP48645 174 aa8.36□□□□□ -1.07
VPS28-215ENST00000531924 JOSD1Q15040 202 aaPredicted RBP8.35□□□□□ -1.07
VPS28-215ENST00000531924 LOC107984156A0A0G2JMH3 177 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 ERC2-IT1O76042 136 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 IGKCP01834 107 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 Q6ZRX8 168 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 SSBP3-AS1Q7Z2R9 100 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 ARL17AQ8IVW1 177 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 PMCHL2Q9BQD1 86 aa8.34□□□□□ -1.07
VPS28-215ENST00000531924 LCE2AQ5TA79 106 aaPredicted RBP8.33□□□□□ -1.08
VPS28-215ENST00000531924 KRTAP9-2Q9BYQ4 174 aa8.33□□□□□ -1.08
VPS28-215ENST00000531924 TRAV23DV6A0A075B6W5 121 aa8.32□□□□□ -1.08
VPS28-215ENST00000531924 NDUFC2O95298 119 aa8.32□□□□□ -1.08
VPS28-215ENST00000531924 KRTAP13-3Q3SY46 172 aa8.32□□□□□ -1.08
VPS28-215ENST00000531924 SLC25A20O43772 301 aa8.31□□□□□ -1.08
VPS28-215ENST00000531924 HINT1P49773 126 aaPredicted RBP8.31□□□□□ -1.08
VPS28-215ENST00000531924 C9orf153Q5TBE3 101 aa8.31□□□□□ -1.08
VPS28-215ENST00000531924 Q9BRP9 147 aa8.31□□□□□ -1.08
VPS28-215ENST00000531924 CBY1Q9Y3M2 126 aa8.31□□□□□ -1.08
VPS28-215ENST00000531924 IGLV6-57P01721 117 aa8.3□□□□□ -1.08
VPS28-215ENST00000531924 SEC61BP60468 96 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms