RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMEM258P61165 79 aa13.06□□□□□ -0.32
VPS28-213ENST00000530983 C6orf99Q4VX62 202 aa13.06□□□□□ -0.32
VPS28-213ENST00000530983 C5orf47Q569G3 176 aa13.06□□□□□ -0.32
VPS28-213ENST00000530983 DPH3Q96FX2 82 aa13.06□□□□□ -0.32
VPS28-213ENST00000530983 UNQ6190/PRO20217Q6UXQ8 127 aa13.06□□□□□ -0.32
VPS28-213ENST00000530983 TMEM256-PLSCR3K7ERE1 68 aa13.05□□□□□ -0.32
VPS28-213ENST00000530983 JMJD7-PLA2G4BH0Y9G9 81 aa13.05□□□□□ -0.32
VPS28-213ENST00000530983 MIFP14174 115 aa13.04□□□□□ -0.32
VPS28-213ENST00000530983 SPAG11BQ08648 103 aa13.04□□□□□ -0.32
VPS28-213ENST00000530983 LELP1Q5T871 98 aa13.04□□□□□ -0.32
VPS28-213ENST00000530983 OTOGQ6ZRI0 2925 aa13.03□□□□□ -0.32
VPS28-213ENST00000530983 HTN3P15516 51 aa13.03□□□□□ -0.32
VPS28-213ENST00000530983 INAFM1C9JVW0 142 aa13.02□□□□□ -0.32
VPS28-213ENST00000530983 S100A7L2Q5SY68 101 aa13.02□□□□□ -0.32
VPS28-213ENST00000530983 NOTCH2Q04721 2471 aa13.02□□□□□ -0.32
VPS28-213ENST00000530983 OXTP01178 125 aa13.02□□□□□ -0.33
VPS28-213ENST00000530983 DSCR8Q96T75 97 aa13.02□□□□□ -0.33
VPS28-213ENST00000530983 NSD1Q96L73 2696 aaPredicted RBP13.01□□□□□ -0.33
VPS28-213ENST00000530983 CYSRT1A8MQ03 144 aa13.01□□□□□ -0.33
VPS28-213ENST00000530983 PRR34Q9NV39 138 aa13.01□□□□□ -0.33
VPS28-213ENST00000530983 A0A0J9YWU9 116 aa13.01□□□□□ -0.33
VPS28-213ENST00000530983 SPART-AS1P0CW21 52 aa13.01□□□□□ -0.33
VPS28-213ENST00000530983 IGHV4-30-4P0DP06 118 aa13.01□□□□□ -0.33
VPS28-213ENST00000530983 TRRAPQ9Y4A5 3859 aa13□□□□□ -0.33
VPS28-213ENST00000530983 ATP5EP2Q5VTU8 51 aa13□□□□□ -0.33
VPS28-213ENST00000530983 LINC00575Q6W349 94 aa13□□□□□ -0.33
VPS28-213ENST00000530983 KLK12Q9UKR0 248 aa13□□□□□ -0.33
VPS28-213ENST00000530983 WFDC9Q8NEX5 89 aa13□□□□□ -0.33
VPS28-213ENST00000530983 HIVEP1P15822 2718 aa12.99□□□□□ -0.33
VPS28-213ENST00000530983 MUC7Q8TAX7 377 aa12.99□□□□□ -0.33
VPS28-213ENST00000530983 ENHOQ6UWT2 76 aa12.98□□□□□ -0.33
VPS28-213ENST00000530983 HECTD1Q9ULT8 2610 aa12.97□□□□□ -0.33
VPS28-213ENST00000530983 IGLV6-57P01721 117 aa12.96□□□□□ -0.33
VPS28-213ENST00000530983 LYPD5Q6UWN5 251 aa12.95□□□□□ -0.34
VPS28-213ENST00000530983 FAM19A1Q7Z5A9 133 aa12.95□□□□□ -0.34
VPS28-213ENST00000530983 ATRQ13535 2644 aa12.95□□□□□ -0.34
VPS28-213ENST00000530983 TRAV23DV6A0A075B6W5 121 aa12.94□□□□□ -0.34
VPS28-213ENST00000530983 GHRHP01286 108 aa12.94□□□□□ -0.34
VPS28-213ENST00000530983 GVQW2A0A096LPI5 108 aaPredicted RBP12.93□□□□□ -0.34
VPS28-213ENST00000530983 TEP1Q99973 2627 aaKnown RBP12.93□□□□□ -0.34
VPS28-213ENST00000530983 C6orf48Q9UBA6 75 aa12.93□□□□□ -0.34
VPS28-213ENST00000530983 TRBV10-3A0A0K0K1G6 114 aa12.92□□□□□ -0.34
VPS28-213ENST00000530983 NDUFC2-KCTD14E9PQ53 114 aa12.91□□□□□ -0.34
VPS28-213ENST00000530983 ZNF561-AS1K7EIQ3 104 aa12.9□□□□□ -0.34
VPS28-213ENST00000530983 RBM3P98179 157 aaKnown RBP12.89□□□□□ -0.35
VPS28-213ENST00000530983 Q6ZQT0 140 aa12.89□□□□□ -0.35
VPS28-213ENST00000530983 XAGE1AQ9HD64 81 aa12.89□□□□□ -0.35
VPS28-213ENST00000530983 C4orf26Q17RF5 130 aa12.89□□□□□ -0.35
VPS28-213ENST00000530983 Q5XG85 94 aa12.88□□□□□ -0.35
VPS28-213ENST00000530983 Q6ZQY7 126 aa12.87□□□□□ -0.35
VPS28-213ENST00000530983 LOC110117498A0A087WWA1 95 aa12.87□□□□□ -0.35
VPS28-213ENST00000530983 WIPF1O43516 503 aa12.87□□□□□ -0.35
VPS28-213ENST00000530983 UBL5Q9BZL1 73 aa12.87□□□□□ -0.35
VPS28-213ENST00000530983 LAMTOR3Q9UHA4 124 aa12.87□□□□□ -0.35
VPS28-213ENST00000530983 BCE1O60756 84 aa12.85□□□□□ -0.35
VPS28-213ENST00000530983 WFDC10BQ8IUB3 73 aa12.85□□□□□ -0.35
VPS28-213ENST00000530983 C20orf197Q8N268 126 aa12.85□□□□□ -0.35
VPS28-213ENST00000530983 M0R2N4 97 aa12.84□□□□□ -0.35
VPS28-213ENST00000530983 HIGD2BQ4VC39 106 aa12.83□□□□□ -0.36
VPS28-213ENST00000530983 DIRC1Q969H9 104 aa12.83□□□□□ -0.36
VPS28-213ENST00000530983 KRTAP26-1Q6PEX3 210 aa12.82□□□□□ -0.36
VPS28-213ENST00000530983 HRCT1Q6UXD1 115 aa12.82□□□□□ -0.36
VPS28-213ENST00000530983 ZNF73O43830 326 aaPredicted RBP12.81□□□□□ -0.36
VPS28-213ENST00000530983 KPRPQ5T749 579 aaPredicted RBP12.8□□□□□ -0.36
VPS28-213ENST00000530983 CAMK2N2Q96S95 79 aa12.8□□□□□ -0.36
VPS28-213ENST00000530983 PKD1L1Q8TDX9 2849 aa12.8□□□□□ -0.36
VPS28-213ENST00000530983 RETNQ9HD89 108 aa12.8□□□□□ -0.36
VPS28-213ENST00000530983 VPREB1P12018 145 aa12.79□□□□□ -0.36
VPS28-213ENST00000530983 H3BNG1 76 aa12.78□□□□□ -0.36
VPS28-213ENST00000530983 H3BQ85 93 aa12.78□□□□□ -0.36
VPS28-213ENST00000530983 ELOF1P60002 83 aaKnown RBP12.78□□□□□ -0.36
VPS28-213ENST00000530983 COX7BP24311 80 aa12.77□□□□□ -0.36
VPS28-213ENST00000530983 Q6ZRU5 148 aa12.77□□□□□ -0.36
VPS28-213ENST00000530983 EGFEM1PQ0D2K5 195 aa12.77□□□□□ -0.37
VPS28-213ENST00000530983 C15orf56Q8N910 161 aa12.77□□□□□ -0.37
VPS28-213ENST00000530983 FAM236DA0A1B0GTK5 79 aa12.76□□□□□ -0.37
VPS28-213ENST00000530983 FAM236CP0DP71 79 aa12.76□□□□□ -0.37
VPS28-213ENST00000530983 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.76□□□□□ -0.37
VPS28-213ENST00000530983 Q6ZTC4 211 aa12.76□□□□□ -0.37
VPS28-213ENST00000530983 Q6ZVQ6 151 aa12.75□□□□□ -0.37
VPS28-213ENST00000530983 H7BZZ5 65 aa12.74□□□□□ -0.37
VPS28-213ENST00000530983 PDE6GP18545 87 aa12.74□□□□□ -0.37
VPS28-213ENST00000530983 LINC01547P58512 204 aaPredicted RBP12.74□□□□□ -0.37
VPS28-213ENST00000530983 ANK2Q01484 3957 aa12.74□□□□□ -0.37
VPS28-213ENST00000530983 TRAV7A0A075B6U4 112 aa12.74□□□□□ -0.37
VPS28-213ENST00000530983 TRBV7-6A0A0J9YX20 115 aa12.74□□□□□ -0.37
VPS28-213ENST00000530983 EPM2AB3EWF7 344 aa12.73□□□□□ -0.37
VPS28-213ENST00000530983 OXLD1Q5BKU9 147 aa12.73□□□□□ -0.37
VPS28-213ENST00000530983 TRAV10A0A0B4J240 114 aa12.72□□□□□ -0.37
VPS28-213ENST00000530983 TRBV7-4A0A0J9YYF1 115 aa12.72□□□□□ -0.37
VPS28-213ENST00000530983 M0R378 163 aa12.72□□□□□ -0.37
VPS28-213ENST00000530983 ESRGQ1W209 222 aa12.72□□□□□ -0.37
VPS28-213ENST00000530983 KRTAP10-11P60412 298 aa12.72□□□□□ -0.37
VPS28-213ENST00000530983 HAMPP81172 84 aa12.71□□□□□ -0.37
VPS28-213ENST00000530983 TENM3Q9P273 2699 aa12.69□□□□□ -0.38
VPS28-213ENST00000530983 Q6ZRP5 223 aa12.68□□□□□ -0.38
VPS28-213ENST00000530983 LINC00528Q8N1L1 170 aa12.68□□□□□ -0.38
VPS28-213ENST00000530983 SERP1Q9Y6X1 66 aa12.68□□□□□ -0.38
VPS28-213ENST00000530983 KLKP1Q107X0 134 aa12.67□□□□□ -0.38
VPS28-213ENST00000530983 C1orf43Q9BWL3 253 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms