RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 ATP6V1G1O75348 118 aa9.3□□□□□ -0.92
CAPN1-213ENST00000527897 LRP2P98164 4655 aa9.3□□□□□ -0.92
CAPN1-213ENST00000527897 COLCA2A8K830 154 aa9.29□□□□□ -0.92
CAPN1-213ENST00000527897 LINC00310P59036 64 aa9.29□□□□□ -0.92
CAPN1-213ENST00000527897 MEIG1Q5JSS6 88 aa9.29□□□□□ -0.92
CAPN1-213ENST00000527897 SMIM13P0DJ93 91 aa9.28□□□□□ -0.92
CAPN1-213ENST00000527897 RPL13AP40429 203 aaKnown RBP9.28□□□□□ -0.92
CAPN1-213ENST00000527897 Q8NDZ9 215 aa9.28□□□□□ -0.92
CAPN1-213ENST00000527897 TMEM238C9JI98 176 aa9.27□□□□□ -0.93
CAPN1-213ENST00000527897 HSPB8Q9UJY1 196 aa9.27□□□□□ -0.93
CAPN1-213ENST00000527897 PRLHP81277 87 aa9.26□□□□□ -0.93
CAPN1-213ENST00000527897 FAM19A1Q7Z5A9 133 aa9.26□□□□□ -0.93
CAPN1-213ENST00000527897 PMCHL2Q9BQD1 86 aa9.26□□□□□ -0.93
CAPN1-213ENST00000527897 NDUFA12Q9UI09 145 aa9.26□□□□□ -0.93
CAPN1-213ENST00000527897 TMEM126AQ9H061 195 aa9.25□□□□□ -0.93
CAPN1-213ENST00000527897 ANAPC11Q9NYG5 84 aa9.25□□□□□ -0.93
CAPN1-213ENST00000527897 MYMXA0A1B0GTQ4 84 aa9.24□□□□□ -0.93
CAPN1-213ENST00000527897 PLNP26678 52 aa9.24□□□□□ -0.93
CAPN1-213ENST00000527897 HERV-K104P63124 156 aa9.24□□□□□ -0.93
CAPN1-213ENST00000527897 MIR7-3HGQ8N6C7 128 aa9.24□□□□□ -0.93
CAPN1-213ENST00000527897 A0A087X002 238 aa9.23□□□□□ -0.93
CAPN1-213ENST00000527897 DPM2O94777 84 aa9.23□□□□□ -0.93
CAPN1-213ENST00000527897 NCR3O14931 201 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 LEPROTO15243 131 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 CRYGAP11844 174 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 TSPEAR-AS2P59090 65 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 KRTAP13-1Q8IUC0 172 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 BOD1L2Q8IYS8 172 aa9.22□□□□□ -0.93
CAPN1-213ENST00000527897 M0R378 163 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 IGKCP01834 107 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 HERVK_113P61574 105 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 TYMSOSQ8TAI1 123 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 PLEKHB2Q96CS7 222 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 MAP1LC3CQ9BXW4 147 aa9.21□□□□□ -0.94
CAPN1-213ENST00000527897 LINC00587B1AMM8 73 aa9.2□□□□□ -0.94
CAPN1-213ENST00000527897 TSPAN13O95857 204 aa9.2□□□□□ -0.94
CAPN1-213ENST00000527897 J3QQQ9 107 aa9.19□□□□□ -0.94
CAPN1-213ENST00000527897 DAND5Q8N907 189 aa9.19□□□□□ -0.94
CAPN1-213ENST00000527897 LGALS3P17931 250 aaKnown RBP9.18□□□□□ -0.94
CAPN1-213ENST00000527897 HIGD2AQ9BW72 106 aa9.18□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BKO60814 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BJP06899 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BOP23527 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BBP33778 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BDP58876 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BCP62807 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 PRR4Q16378 134 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST2H2BEQ16778 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BHQ93079 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BNQ99877 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 HIST1H2BMQ99879 126 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 LPAP08519 4548 aa9.17□□□□□ -0.94
CAPN1-213ENST00000527897 RNF213Q63HN8 5207 aa9.16□□□□□ -0.94
CAPN1-213ENST00000527897 NMUP48645 174 aa9.14□□□□□ -0.95
CAPN1-213ENST00000527897 KRTAP13-2Q52LG2 175 aa9.14□□□□□ -0.95
CAPN1-213ENST00000527897 MIEN1Q9BRT3 115 aa9.14□□□□□ -0.95
CAPN1-213ENST00000527897 IGKV2D-26A0A0A0MRZ7 120 aa9.13□□□□□ -0.95
CAPN1-213ENST00000527897 PRYO14603 147 aa9.13□□□□□ -0.95
CAPN1-213ENST00000527897 FAM229BQ4G0N7 80 aa9.13□□□□□ -0.95
CAPN1-213ENST00000527897 TRBV10-3A0A0K0K1G6 114 aa9.12□□□□□ -0.95
CAPN1-213ENST00000527897 ETDCA0A1B0GVM5 59 aa9.12□□□□□ -0.95
CAPN1-213ENST00000527897 SYS1-DBNDD2H3BUS1 97 aa9.12□□□□□ -0.95
CAPN1-213ENST00000527897 NPC2P61916 151 aa9.12□□□□□ -0.95
CAPN1-213ENST00000527897 S100A12P80511 92 aa9.11□□□□□ -0.95
CAPN1-213ENST00000527897 E9PLD3 99 aa9.1□□□□□ -0.95
CAPN1-213ENST00000527897 LINC00304Q8N9R0 145 aa9.09□□□□□ -0.95
CAPN1-213ENST00000527897 KCNQ1DNQ9H478 68 aa9.09□□□□□ -0.95
CAPN1-213ENST00000527897 A0A0J9YXY3 114 aa9.08□□□□□ -0.96
CAPN1-213ENST00000527897 DDTP30046 118 aa9.08□□□□□ -0.96
CAPN1-213ENST00000527897 C3orf22Q8N5N4 141 aa9.08□□□□□ -0.96
CAPN1-213ENST00000527897 LINC00337Q8N6G1 96 aa9.08□□□□□ -0.96
CAPN1-213ENST00000527897 S100A7L2Q5SY68 101 aa9.07□□□□□ -0.96
CAPN1-213ENST00000527897 SPRR4Q96PI1 79 aa9.07□□□□□ -0.96
CAPN1-213ENST00000527897 ZNF706Q9Y5V0 76 aaPredicted RBP9.07□□□□□ -0.96
CAPN1-213ENST00000527897 LOC107984156A0A0G2JMH3 177 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 TRBV10-2A0A0K0K1G8 114 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 SPRR1AP35321 89 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 KRTDAPP60985 99 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 ADAMTSL4-AS1Q5T5F5 129 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 LINC01545Q5VT33 79 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 PET117Q6UWS5 81 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 ARL17AQ8IVW1 177 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 SMCR5Q8TEV8 140 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 PPDPFQ9H3Y8 114 aa9.06□□□□□ -0.96
CAPN1-213ENST00000527897 SPANXB1Q9NS25 103 aaPredicted RBP9.06□□□□□ -0.96
CAPN1-213ENST00000527897 C3orf79P0CE67 100 aa9.05□□□□□ -0.96
CAPN1-213ENST00000527897 SOSTDC1Q6X4U4 206 aa9.04□□□□□ -0.96
CAPN1-213ENST00000527897 RETNLBQ9BQ08 111 aa9.04□□□□□ -0.96
CAPN1-213ENST00000527897 KRTAP4-16G5E9R7 235 aaPredicted RBP9.03□□□□□ -0.96
CAPN1-213ENST00000527897 EIF4EBP3O60516 100 aaPredicted RBP9.03□□□□□ -0.96
CAPN1-213ENST00000527897 NDUFC2O95298 119 aa9.03□□□□□ -0.96
CAPN1-213ENST00000527897 ZNF815PA8K554 130 aa9.02□□□□□ -0.97
CAPN1-213ENST00000527897 B5MCH6 92 aa9.02□□□□□ -0.97
CAPN1-213ENST00000527897 TTTY13Q9BZ97 58 aa9.02□□□□□ -0.97
CAPN1-213ENST00000527897 TRAV23DV6A0A075B6W5 121 aa9□□□□□ -0.97
CAPN1-213ENST00000527897 IGLV6-57P01721 117 aa9□□□□□ -0.97
CAPN1-213ENST00000527897 COA6Q5JTJ3 125 aaKnown RBP9□□□□□ -0.97
CAPN1-213ENST00000527897 GAGE2AQ6NT46 116 aa9□□□□□ -0.97
CAPN1-213ENST00000527897 C20orf202A1L168 122 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 346.5 ms