RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 SMR3BP02814 79 aaPredicted RBP8.65□□□□□ -1.02
CD44-224ENST00000526669 KRTAP7-1Q8IUC3 87 aa8.65□□□□□ -1.02
CD44-224ENST00000526669 BOD1L2Q8IYS8 172 aa8.65□□□□□ -1.02
CD44-224ENST00000526669 PLAC8Q9NZF1 115 aa8.65□□□□□ -1.02
CD44-224ENST00000526669 FAT1Q14517 4588 aa8.64□□□□□ -1.03
CD44-224ENST00000526669 TIMM17BO60830 172 aa8.64□□□□□ -1.03
CD44-224ENST00000526669 S100A12P80511 92 aa8.64□□□□□ -1.03
CD44-224ENST00000526669 PHF5AQ7RTV0 110 aaKnown RBP8.64□□□□□ -1.03
CD44-224ENST00000526669 Q8NDZ9 215 aa8.64□□□□□ -1.03
CD44-224ENST00000526669 TMEM238C9JI98 176 aa8.63□□□□□ -1.03
CD44-224ENST00000526669 EIF4EBP3O60516 100 aaPredicted RBP8.63□□□□□ -1.03
CD44-224ENST00000526669 CDK2AP2O75956 126 aa8.63□□□□□ -1.03
CD44-224ENST00000526669 SMIM6P0DI80 62 aa8.63□□□□□ -1.03
CD44-224ENST00000526669 SLC25A34Q6PIV7 304 aa8.63□□□□□ -1.03
CD44-224ENST00000526669 SOSTDC1Q6X4U4 206 aa8.63□□□□□ -1.03
CD44-224ENST00000526669 M0QXV9 152 aa8.62□□□□□ -1.03
CD44-224ENST00000526669 VPS13BQ7Z7G8 4022 aa8.61□□□□□ -1.03
CD44-224ENST00000526669 VPREB1P12018 145 aa8.61□□□□□ -1.03
CD44-224ENST00000526669 MIEN1Q9BRT3 115 aa8.61□□□□□ -1.03
CD44-224ENST00000526669 SPANXDQ9BXN6 97 aa8.61□□□□□ -1.03
CD44-224ENST00000526669 SPANXCQ9NY87 97 aa8.61□□□□□ -1.03
CD44-224ENST00000526669 NCR3O14931 201 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 DLEU1O43261 78 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 NKAPP1Q8N9T2 125 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 LINC00308Q8TCZ7 52 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 PRO1933Q9H354 126 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 PLA2G2DQ9UNK4 145 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 C22orf24Q9Y442 160 aa8.6□□□□□ -1.03
CD44-224ENST00000526669 GAGE10A6NGK3 116 aa8.59□□□□□ -1.03
CD44-224ENST00000526669 PRR3P79522 188 aaKnown RBP8.59□□□□□ -1.03
CD44-224ENST00000526669 PKHD1L1Q86WI1 4243 aa8.58□□□□□ -1.04
CD44-224ENST00000526669 EPM2AB3EWF7 344 aa8.58□□□□□ -1.04
CD44-224ENST00000526669 RPL24P83731 157 aaKnown RBP8.58□□□□□ -1.04
CD44-224ENST00000526669 SRSF9Q13242 221 aaKnown RBP eCLIP8.58□□□□□ -1.04
CD44-224ENST00000526669 C2orf91Q6ZV80 131 aa8.58□□□□□ -1.04
CD44-224ENST00000526669 LINC00528Q8N1L1 170 aa8.58□□□□□ -1.04
CD44-224ENST00000526669 C12orf57Q99622 126 aa8.58□□□□□ -1.04
CD44-224ENST00000526669 IGLV5-37A0A075B6J1 123 aa8.57□□□□□ -1.04
CD44-224ENST00000526669 UBE2BP63146 152 aa8.57□□□□□ -1.04
CD44-224ENST00000526669 MUSTN1Q8IVN3 82 aa8.57□□□□□ -1.04
CD44-224ENST00000526669 KRTAP17-1Q9BYP8 105 aa8.57□□□□□ -1.04
CD44-224ENST00000526669 SPANXB1Q9NS25 103 aaPredicted RBP8.57□□□□□ -1.04
CD44-224ENST00000526669 LOC107984156A0A0G2JMH3 177 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 MRPL55Q7Z7F7 128 aaKnown RBP8.56□□□□□ -1.04
CD44-224ENST00000526669 KRTAP11-1Q8IUC1 163 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 ARL17AQ8IVW1 177 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 C7orf33Q8WU49 177 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 HIST1H4GQ99525 98 aa8.56□□□□□ -1.04
CD44-224ENST00000526669 RPL37AP8A6NKH3 93 aa8.55□□□□□ -1.04
CD44-224ENST00000526669 HIGD1BQ9P298 99 aa8.55□□□□□ -1.04
CD44-224ENST00000526669 UQCR10Q9UDW1 63 aa8.55□□□□□ -1.04
CD44-224ENST00000526669 IFITM1P13164 125 aa8.54□□□□□ -1.04
CD44-224ENST00000526669 Q6ZVH6 145 aa8.54□□□□□ -1.04
CD44-224ENST00000526669 IGKV2-28A0A075B6P5 120 aa8.53□□□□□ -1.04
CD44-224ENST00000526669 M0R378 163 aa8.53□□□□□ -1.04
CD44-224ENST00000526669 IGKV2D-28P01615 120 aa8.53□□□□□ -1.04
CD44-224ENST00000526669 LBHQ53QV2 105 aaPredicted RBP8.53□□□□□ -1.04
CD44-224ENST00000526669 NDUFC2O95298 119 aa8.52□□□□□ -1.05
CD44-224ENST00000526669 RPL37AP61513 92 aaKnown RBP8.52□□□□□ -1.05
CD44-224ENST00000526669 LINC00518Q8N0U6 118 aa8.52□□□□□ -1.05
CD44-224ENST00000526669 COPS9Q8WXC6 57 aa8.52□□□□□ -1.05
CD44-224ENST00000526669 HERC2O95714 4834 aa8.52□□□□□ -1.05
CD44-224ENST00000526669 HNRNPA3P51991 378 aaKnown RBP8.51□□□□□ -1.05
CD44-224ENST00000526669 Q5VSD8 79 aa8.51□□□□□ -1.05
CD44-224ENST00000526669 PSORS1C2Q9UIG4 136 aa8.51□□□□□ -1.05
CD44-224ENST00000526669 TRBV10-3A0A0K0K1G6 114 aa8.5□□□□□ -1.05
CD44-224ENST00000526669 A4D1N5 150 aa8.49□□□□□ -1.05
CD44-224ENST00000526669 FAM229AH3BQW9 127 aa8.49□□□□□ -1.05
CD44-224ENST00000526669 Q8N1X5 172 aa8.49□□□□□ -1.05
CD44-224ENST00000526669 OR13C6PQ8NH95 151 aa8.49□□□□□ -1.05
CD44-224ENST00000526669 IGLV1-50A0A075B6I6 118 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 TRBV10-2A0A0K0K1G8 114 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 DDTP30046 118 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 C1orf137Q5JT78 98 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 S100A7L2Q5SY68 101 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 LINC00337Q8N6G1 96 aa8.48□□□□□ -1.05
CD44-224ENST00000526669 CEND1Q8N111 149 aa8.47□□□□□ -1.05
CD44-224ENST00000526669 PPDPFQ9H3Y8 114 aa8.47□□□□□ -1.05
CD44-224ENST00000526669 TSTD3H0UI37 97 aa8.46□□□□□ -1.06
CD44-224ENST00000526669 FXYD2P54710 66 aa8.46□□□□□ -1.06
CD44-224ENST00000526669 HSD52Q0P140 79 aa8.46□□□□□ -1.06
CD44-224ENST00000526669 TAL2Q16559 108 aa8.46□□□□□ -1.06
CD44-224ENST00000526669 PLA2G1BP04054 148 aaKnown RBP8.45□□□□□ -1.06
CD44-224ENST00000526669 KRTAP10-4P60372 401 aaPredicted RBP8.45□□□□□ -1.06
CD44-224ENST00000526669 KRTAP4-5Q9BYR2 181 aa8.45□□□□□ -1.06
CD44-224ENST00000526669 SRRM2Q9UQ35 2752 aaKnown RBP8.44□□□□□ -1.06
CD44-224ENST00000526669 A6NDN8 102 aa8.44□□□□□ -1.06
CD44-224ENST00000526669 PRYO14603 147 aa8.44□□□□□ -1.06
CD44-224ENST00000526669 IGLV6-57P01721 117 aa8.44□□□□□ -1.06
CD44-224ENST00000526669 REG3GQ6UW15 175 aa8.44□□□□□ -1.06
CD44-224ENST00000526669 TMEM126AQ9H061 195 aa8.44□□□□□ -1.06
CD44-224ENST00000526669 CTAG1AP78358 180 aa8.43□□□□□ -1.06
CD44-224ENST00000526669 TRAV23DV6A0A075B6W5 121 aa8.42□□□□□ -1.06
CD44-224ENST00000526669 TRAV13-2A0A0B4J235 113 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 BCE1O60756 84 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 IGLV7-43P04211 117 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 CFC1BP0CG36 223 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 CFC1P0CG37 223 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 RPL13AP40429 203 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms