RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MAJINQ3KP22 176 aa12.86□□□□□ -0.35
USP53-208ENST00000514305 MEIG1Q5JSS6 88 aa12.86□□□□□ -0.35
USP53-208ENST00000514305 CIRBPQ14011 172 aaKnown RBP12.85□□□□□ -0.35
USP53-208ENST00000514305 JOSD1Q15040 202 aaPredicted RBP12.85□□□□□ -0.35
USP53-208ENST00000514305 C9orf116Q5BN46 136 aaPredicted RBP12.85□□□□□ -0.35
USP53-208ENST00000514305 A0A096LNI7 61 aa12.84□□□□□ -0.35
USP53-208ENST00000514305 GAGE2EQ4V326 116 aa12.84□□□□□ -0.35
USP53-208ENST00000514305 SCXQ7RTU7 201 aa12.84□□□□□ -0.35
USP53-208ENST00000514305 GAGE2DQ9UEU5 116 aa12.84□□□□□ -0.35
USP53-208ENST00000514305 KRTAP4-8A0A0G2JLE6 195 aa12.83□□□□□ -0.36
USP53-208ENST00000514305 PFN2P35080 140 aa12.83□□□□□ -0.36
USP53-208ENST00000514305 LINC00158P58513 81 aa12.83□□□□□ -0.36
USP53-208ENST00000514305 Q6ZRP5 223 aa12.83□□□□□ -0.36
USP53-208ENST00000514305 SPACA4Q8TDM5 124 aa12.83□□□□□ -0.36
USP53-208ENST00000514305 TSPEAR-AS2P59090 65 aa12.81□□□□□ -0.36
USP53-208ENST00000514305 ZNF815PA8K554 130 aa12.8□□□□□ -0.36
USP53-208ENST00000514305 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.8□□□□□ -0.36
USP53-208ENST00000514305 CHTF8P0CG12 524 aa12.79□□□□□ -0.36
USP53-208ENST00000514305 ANKRD39Q53RE8 183 aa12.78□□□□□ -0.36
USP53-208ENST00000514305 A0A087WYN8 130 aa12.77□□□□□ -0.37
USP53-208ENST00000514305 IGKV2D-26A0A0A0MRZ7 120 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 SMIM13P0DJ93 91 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 SCGB1D4Q6XE38 83 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 CIRBP-AS1Q8TBR5 109 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 VAMP8Q9BV40 100 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 PLAC8Q9NZF1 115 aa12.76□□□□□ -0.37
USP53-208ENST00000514305 A0A0J9YXY3 114 aa12.75□□□□□ -0.37
USP53-208ENST00000514305 KRTAP29-1A8MX34 341 aaPredicted RBP12.75□□□□□ -0.37
USP53-208ENST00000514305 A0A0U1RRA0 63 aa12.74□□□□□ -0.37
USP53-208ENST00000514305 TIMM17BO60830 172 aa12.74□□□□□ -0.37
USP53-208ENST00000514305 MIEN1Q9BRT3 115 aa12.74□□□□□ -0.37
USP53-208ENST00000514305 XAGE1AQ9HD64 81 aa12.74□□□□□ -0.37
USP53-208ENST00000514305 PANO1I0J062 215 aa12.73□□□□□ -0.37
USP53-208ENST00000514305 RPL24P83731 157 aaKnown RBP12.73□□□□□ -0.37
USP53-208ENST00000514305 MIR7-3HGQ8N6C7 128 aa12.72□□□□□ -0.37
USP53-208ENST00000514305 C7orf33Q8WU49 177 aa12.72□□□□□ -0.37
USP53-208ENST00000514305 COPS9Q8WXC6 57 aa12.72□□□□□ -0.37
USP53-208ENST00000514305 SND1-IT1Q9HBX3 110 aa12.72□□□□□ -0.37
USP53-208ENST00000514305 PLA2G2DQ9UNK4 145 aa12.72□□□□□ -0.37
USP53-208ENST00000514305 S100A12P80511 92 aa12.71□□□□□ -0.37
USP53-208ENST00000514305 PYY3Q5JQD4 70 aa12.71□□□□□ -0.37
USP53-208ENST00000514305 C9orf129Q5T035 196 aaKnown RBP12.71□□□□□ -0.37
USP53-208ENST00000514305 TMEM238C9JI98 176 aa12.7□□□□□ -0.38
USP53-208ENST00000514305 SPATA45Q537H7 98 aa12.7□□□□□ -0.38
USP53-208ENST00000514305 A0A1W2PNN7 141 aa12.69□□□□□ -0.38
USP53-208ENST00000514305 LBHQ53QV2 105 aaPredicted RBP12.69□□□□□ -0.38
USP53-208ENST00000514305 PAM16Q9Y3D7 125 aa12.69□□□□□ -0.38
USP53-208ENST00000514305 Q6ZVH6 145 aa12.68□□□□□ -0.38
USP53-208ENST00000514305 FAM19A5Q7Z5A7 132 aaPredicted RBP12.68□□□□□ -0.38
USP53-208ENST00000514305 PCP2Q8IVA1 136 aa12.68□□□□□ -0.38
USP53-208ENST00000514305 NKAPP1Q8N9T2 125 aa12.68□□□□□ -0.38
USP53-208ENST00000514305 TTTY13Q9BZ97 58 aa12.68□□□□□ -0.38
USP53-208ENST00000514305 KRTAP10-4P60372 401 aaPredicted RBP12.67□□□□□ -0.38
USP53-208ENST00000514305 COX8AP10176 69 aa12.66□□□□□ -0.38
USP53-208ENST00000514305 TP73-AS1Q9UF72 201 aa12.66□□□□□ -0.38
USP53-208ENST00000514305 M0QXV9 152 aa12.65□□□□□ -0.38
USP53-208ENST00000514305 DLEU1O43261 78 aa12.65□□□□□ -0.38
USP53-208ENST00000514305 RPL37AP61513 92 aaKnown RBP12.65□□□□□ -0.38
USP53-208ENST00000514305 BOD1L2Q8IYS8 172 aa12.64□□□□□ -0.39
USP53-208ENST00000514305 C22orf24Q9Y442 160 aa12.64□□□□□ -0.39
USP53-208ENST00000514305 IGLV5-37A0A075B6J1 123 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 LOC107984156A0A0G2JMH3 177 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 FAM168BA1KXE4 195 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 OXTP01178 125 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 IFITM1P13164 125 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 ARL17AQ8IVW1 177 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 SPANXDQ9BXN6 97 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 SPANXCQ9NY87 97 aa12.63□□□□□ -0.39
USP53-208ENST00000514305 UBE2BP63146 152 aa12.62□□□□□ -0.39
USP53-208ENST00000514305 SLC25A34Q6PIV7 304 aa12.62□□□□□ -0.39
USP53-208ENST00000514305 DAND5Q8N907 189 aa12.62□□□□□ -0.39
USP53-208ENST00000514305 SRSF9Q13242 221 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP53-208ENST00000514305 SERTAD4-AS1Q5TG53 156 aa12.61□□□□□ -0.39
USP53-208ENST00000514305 MRPL55Q7Z7F7 128 aaKnown RBP12.61□□□□□ -0.39
USP53-208ENST00000514305 ADAMTSL4-AS1Q5T5F5 129 aa12.6□□□□□ -0.39
USP53-208ENST00000514305 PHF5AQ7RTV0 110 aaKnown RBP12.6□□□□□ -0.39
USP53-208ENST00000514305 NDUFC2O95298 119 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 SMIM6P0DI80 62 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 VPREB1P12018 145 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 C14orf144Q96I85 54 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 LITAFQ99732 161 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 PPDPFQ9H3Y8 114 aa12.59□□□□□ -0.39
USP53-208ENST00000514305 M0R378 163 aa12.58□□□□□ -0.4
USP53-208ENST00000514305 LINC00308Q8TCZ7 52 aa12.58□□□□□ -0.4
USP53-208ENST00000514305 SPANXB1Q9NS25 103 aaPredicted RBP12.58□□□□□ -0.4
USP53-208ENST00000514305 NPC2P61916 151 aa12.56□□□□□ -0.4
USP53-208ENST00000514305 TRBV10-2A0A0K0K1G8 114 aa12.55□□□□□ -0.4
USP53-208ENST00000514305 LINC00518Q8N0U6 118 aa12.55□□□□□ -0.4
USP53-208ENST00000514305 CBY1Q9Y3M2 126 aa12.55□□□□□ -0.4
USP53-208ENST00000514305 LOC105371267A0A1B0GV96 52 aa12.54□□□□□ -0.4
USP53-208ENST00000514305 KRTAP7-1Q8IUC3 87 aa12.54□□□□□ -0.4
USP53-208ENST00000514305 LINC00167Q96N53 147 aa12.54□□□□□ -0.4
USP53-208ENST00000514305 HIGD1BQ9P298 99 aa12.54□□□□□ -0.4
USP53-208ENST00000514305 LRP1Q07954 4544 aaKnown RBP12.54□□□□□ -0.4
USP53-208ENST00000514305 HIST1H4GQ99525 98 aa12.52□□□□□ -0.41
USP53-208ENST00000514305 PKHD1L1Q86WI1 4243 aa12.52□□□□□ -0.41
USP53-208ENST00000514305 S100A7L2Q5SY68 101 aa12.51□□□□□ -0.41
USP53-208ENST00000514305 MUSTN1Q8IVN3 82 aa12.51□□□□□ -0.41
USP53-208ENST00000514305 UQCR10Q9UDW1 63 aa12.51□□□□□ -0.41
USP53-208ENST00000514305 GAGE10A6NGK3 116 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms