RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 PMCHL2Q9BQD1 86 aa8.57□□□□□ -1.04
HOXC9-202ENST00000504557 KRTAP1-4P0C5Y4 121 aa8.56□□□□□ -1.04
HOXC9-202ENST00000504557 VPREB1P12018 145 aa8.56□□□□□ -1.04
HOXC9-202ENST00000504557 RPL28P46779 137 aaKnown RBP8.56□□□□□ -1.04
HOXC9-202ENST00000504557 SFTA2Q6UW10 78 aa8.56□□□□□ -1.04
HOXC9-202ENST00000504557 SMIM13P0DJ93 91 aa8.55□□□□□ -1.04
HOXC9-202ENST00000504557 RPL24P83731 157 aaKnown RBP8.55□□□□□ -1.04
HOXC9-202ENST00000504557 Q8NDZ9 215 aa8.55□□□□□ -1.04
HOXC9-202ENST00000504557 HSPB8Q9UJY1 196 aa8.55□□□□□ -1.04
HOXC9-202ENST00000504557 IGLV1-50A0A075B6I6 118 aa8.53□□□□□ -1.04
HOXC9-202ENST00000504557 TMEM238C9JI98 176 aa8.53□□□□□ -1.04
HOXC9-202ENST00000504557 NDUFA12Q9UI09 145 aa8.53□□□□□ -1.04
HOXC9-202ENST00000504557 PRLHP81277 87 aa8.52□□□□□ -1.05
HOXC9-202ENST00000504557 FAM19A1Q7Z5A9 133 aa8.52□□□□□ -1.05
HOXC9-202ENST00000504557 NCR3O14931 201 aa8.51□□□□□ -1.05
HOXC9-202ENST00000504557 PLNP26678 52 aa8.51□□□□□ -1.05
HOXC9-202ENST00000504557 TSPEAR-AS2P59090 65 aa8.51□□□□□ -1.05
HOXC9-202ENST00000504557 MIR7-3HGQ8N6C7 128 aa8.51□□□□□ -1.05
HOXC9-202ENST00000504557 ANAPC11Q9NYG5 84 aa8.51□□□□□ -1.05
HOXC9-202ENST00000504557 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 DPM2O94777 84 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 HERV-K104P63124 156 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 UBR4Q5T4S7 5183 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 BOD1L2Q8IYS8 172 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 TMEM126AQ9H061 195 aa8.5□□□□□ -1.05
HOXC9-202ENST00000504557 LEPROTO15243 131 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 IGKCP01834 107 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 RPL13AP40429 203 aaKnown RBP8.49□□□□□ -1.05
HOXC9-202ENST00000504557 HERVK_113P61574 105 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 DAND5Q8N907 189 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 PLEKHB2Q96CS7 222 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 MAP1LC3CQ9BXW4 147 aa8.49□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BKO60814 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BJP06899 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BOP23527 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BBP33778 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BDP58876 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BCP62807 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST2H2BEQ16778 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BHQ93079 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BNQ99877 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 HIST1H2BMQ99879 126 aa8.48□□□□□ -1.05
HOXC9-202ENST00000504557 A0A087X002 238 aa8.47□□□□□ -1.05
HOXC9-202ENST00000504557 J3QQQ9 107 aa8.47□□□□□ -1.05
HOXC9-202ENST00000504557 M0R378 163 aa8.47□□□□□ -1.05
HOXC9-202ENST00000504557 LGALS3P17931 250 aaKnown RBP8.47□□□□□ -1.05
HOXC9-202ENST00000504557 TSPAN13O95857 204 aa8.46□□□□□ -1.06
HOXC9-202ENST00000504557 KRTAP13-1Q8IUC0 172 aa8.46□□□□□ -1.06
HOXC9-202ENST00000504557 LINC00587B1AMM8 73 aa8.45□□□□□ -1.06
HOXC9-202ENST00000504557 CRYGAP11844 174 aa8.45□□□□□ -1.06
HOXC9-202ENST00000504557 HIGD2AQ9BW72 106 aa8.45□□□□□ -1.06
HOXC9-202ENST00000504557 TYMSOSQ8TAI1 123 aa8.44□□□□□ -1.06
HOXC9-202ENST00000504557 NPC2P61916 151 aa8.43□□□□□ -1.06
HOXC9-202ENST00000504557 SYS1-DBNDD2H3BUS1 97 aa8.42□□□□□ -1.06
HOXC9-202ENST00000504557 NMUP48645 174 aa8.41□□□□□ -1.06
HOXC9-202ENST00000504557 PRR4Q16378 134 aa8.41□□□□□ -1.06
HOXC9-202ENST00000504557 MIEN1Q9BRT3 115 aa8.41□□□□□ -1.06
HOXC9-202ENST00000504557 LRP2P98164 4655 aa8.41□□□□□ -1.06
HOXC9-202ENST00000504557 TRBV10-3A0A0K0K1G6 114 aa8.4□□□□□ -1.06
HOXC9-202ENST00000504557 PRYO14603 147 aa8.39□□□□□ -1.07
HOXC9-202ENST00000504557 KRTAP13-2Q52LG2 175 aa8.39□□□□□ -1.07
HOXC9-202ENST00000504557 IGKV2D-26A0A0A0MRZ7 120 aa8.38□□□□□ -1.07
HOXC9-202ENST00000504557 ETDCA0A1B0GVM5 59 aa8.38□□□□□ -1.07
HOXC9-202ENST00000504557 E9PLD3 99 aa8.38□□□□□ -1.07
HOXC9-202ENST00000504557 KRTDAPP60985 99 aa8.38□□□□□ -1.07
HOXC9-202ENST00000504557 A0A0J9YXY3 114 aa8.37□□□□□ -1.07
HOXC9-202ENST00000504557 S100A12P80511 92 aa8.37□□□□□ -1.07
HOXC9-202ENST00000504557 C3orf79P0CE67 100 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 DDTP30046 118 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 FAM229BQ4G0N7 80 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 S100A7L2Q5SY68 101 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 ADAMTSL4-AS1Q5T5F5 129 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 LINC01545Q5VT33 79 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 PET117Q6UWS5 81 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 KCNQ1DNQ9H478 68 aa8.36□□□□□ -1.07
HOXC9-202ENST00000504557 C3orf22Q8N5N4 141 aa8.35□□□□□ -1.07
HOXC9-202ENST00000504557 PPDPFQ9H3Y8 114 aa8.35□□□□□ -1.07
HOXC9-202ENST00000504557 EIF4EBP3O60516 100 aaPredicted RBP8.34□□□□□ -1.07
HOXC9-202ENST00000504557 SOSTDC1Q6X4U4 206 aa8.34□□□□□ -1.07
HOXC9-202ENST00000504557 LINC00304Q8N9R0 145 aa8.34□□□□□ -1.07
HOXC9-202ENST00000504557 SMCR5Q8TEV8 140 aa8.34□□□□□ -1.07
HOXC9-202ENST00000504557 TTTY13Q9BZ97 58 aa8.34□□□□□ -1.07
HOXC9-202ENST00000504557 SPANXB1Q9NS25 103 aaPredicted RBP8.34□□□□□ -1.07
HOXC9-202ENST00000504557 ZNF815PA8K554 130 aa8.33□□□□□ -1.08
HOXC9-202ENST00000504557 LINC00337Q8N6G1 96 aa8.33□□□□□ -1.08
HOXC9-202ENST00000504557 SPRR4Q96PI1 79 aa8.33□□□□□ -1.08
HOXC9-202ENST00000504557 LPAP08519 4548 aa8.33□□□□□ -1.08
HOXC9-202ENST00000504557 LOC107984156A0A0G2JMH3 177 aa8.32□□□□□ -1.08
HOXC9-202ENST00000504557 SPRR1AP35321 89 aa8.32□□□□□ -1.08
HOXC9-202ENST00000504557 ARL17AQ8IVW1 177 aa8.32□□□□□ -1.08
HOXC9-202ENST00000504557 ATOH7Q8N100 152 aa8.32□□□□□ -1.08
HOXC9-202ENST00000504557 RETNLBQ9BQ08 111 aa8.32□□□□□ -1.08
HOXC9-202ENST00000504557 TRBV10-2A0A0K0K1G8 114 aa8.31□□□□□ -1.08
HOXC9-202ENST00000504557 COA6Q5JTJ3 125 aaKnown RBP8.31□□□□□ -1.08
HOXC9-202ENST00000504557 ZNF706Q9Y5V0 76 aaPredicted RBP8.31□□□□□ -1.08
HOXC9-202ENST00000504557 C20orf202A1L168 122 aa8.3□□□□□ -1.08
HOXC9-202ENST00000504557 KRTAP4-16G5E9R7 235 aaPredicted RBP8.3□□□□□ -1.08
HOXC9-202ENST00000504557 NDUFC2O95298 119 aa8.3□□□□□ -1.08
HOXC9-202ENST00000504557 TRAV23DV6A0A075B6W5 121 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms