RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 ZNF462Q96JM2 2506 aa11.39□□□□□ -0.59
PCDHA1-203ENST00000504120 RETNLBQ9BQ08 111 aa11.38□□□□□ -0.59
PCDHA1-203ENST00000504120 DNAH12Q6ZR08 3092 aa11.38□□□□□ -0.59
PCDHA1-203ENST00000504120 SMCPP49901 116 aaPredicted RBP11.38□□□□□ -0.59
PCDHA1-203ENST00000504120 LRRK2Q5S007 2527 aa11.38□□□□□ -0.59
PCDHA1-203ENST00000504120 SBSPONQ8IVN8 264 aa11.38□□□□□ -0.59
PCDHA1-203ENST00000504120 A0A1B0GW54 56 aa11.37□□□□□ -0.59
PCDHA1-203ENST00000504120 MDFIQ99750 246 aa11.36□□□□□ -0.59
PCDHA1-203ENST00000504120 Q9UF83 564 aa11.36□□□□□ -0.59
PCDHA1-203ENST00000504120 FSHBP01225 129 aa11.36□□□□□ -0.59
PCDHA1-203ENST00000504120 ELOF1P60002 83 aaKnown RBP11.35□□□□□ -0.59
PCDHA1-203ENST00000504120 PMAIP1Q13794 54 aa11.35□□□□□ -0.59
PCDHA1-203ENST00000504120 PRO0461Q9UI25 63 aa11.35□□□□□ -0.59
PCDHA1-203ENST00000504120 FAM218AQ96MZ4 157 aa11.35□□□□□ -0.59
PCDHA1-203ENST00000504120 BCE1O60756 84 aa11.34□□□□□ -0.59
PCDHA1-203ENST00000504120 C1orf64Q8NEQ6 169 aa11.34□□□□□ -0.59
PCDHA1-203ENST00000504120 SETD2Q9BYW2 2564 aaPredicted RBP11.33□□□□□ -0.6
PCDHA1-203ENST00000504120 SMIM29Q86T20 159 aa11.33□□□□□ -0.6
PCDHA1-203ENST00000504120 PSPHP1O15172 72 aa11.32□□□□□ -0.6
PCDHA1-203ENST00000504120 SPINK1P00995 79 aa11.3□□□□□ -0.6
PCDHA1-203ENST00000504120 TP53AIP1Q9HCN2 124 aa11.29□□□□□ -0.6
PCDHA1-203ENST00000504120 LOC110117498A0A087WWA1 95 aa11.29□□□□□ -0.6
PCDHA1-203ENST00000504120 CRYGAP11844 174 aa11.28□□□□□ -0.6
PCDHA1-203ENST00000504120 Q8NAQ8 132 aa11.28□□□□□ -0.6
PCDHA1-203ENST00000504120 Q6ZRX8 168 aa11.28□□□□□ -0.6
PCDHA1-203ENST00000504120 Q6ZQT0 140 aa11.28□□□□□ -0.6
PCDHA1-203ENST00000504120 PKD1L2Q7Z442 2459 aa11.27□□□□□ -0.61
PCDHA1-203ENST00000504120 COL27A1Q8IZC6 1860 aaPredicted RBP11.26□□□□□ -0.61
PCDHA1-203ENST00000504120 MOBPQ13875 183 aa11.26□□□□□ -0.61
PCDHA1-203ENST00000504120 Q8NBF4 154 aa11.25□□□□□ -0.61
PCDHA1-203ENST00000504120 GVQW2A0A096LPI5 108 aaPredicted RBP11.24□□□□□ -0.61
PCDHA1-203ENST00000504120 KRTAP24-1Q3LI83 254 aa11.24□□□□□ -0.61
PCDHA1-203ENST00000504120 IGKV2D-30A0A075B6S6 120 aa11.22□□□□□ -0.61
PCDHA1-203ENST00000504120 IGKV2-30P06310 120 aa11.22□□□□□ -0.61
PCDHA1-203ENST00000504120 LINC00476Q8WZB0 136 aa11.22□□□□□ -0.61
PCDHA1-203ENST00000504120 LITAFQ99732 161 aa11.22□□□□□ -0.61
PCDHA1-203ENST00000504120 C16orf90A8MZG2 172 aa11.22□□□□□ -0.61
PCDHA1-203ENST00000504120 PHF5AQ7RTV0 110 aaKnown RBP11.21□□□□□ -0.62
PCDHA1-203ENST00000504120 LINC00588Q9Y4M8 146 aa11.2□□□□□ -0.62
PCDHA1-203ENST00000504120 NBDYA0A0U1RRE5 68 aa11.19□□□□□ -0.62
PCDHA1-203ENST00000504120 UTRNP46939 3433 aa11.19□□□□□ -0.62
PCDHA1-203ENST00000504120 H3BPC8 53 aa11.19□□□□□ -0.62
PCDHA1-203ENST00000504120 SPACA4Q8TDM5 124 aa11.19□□□□□ -0.62
PCDHA1-203ENST00000504120 CEP350Q5VT06 3117 aa11.18□□□□□ -0.62
PCDHA1-203ENST00000504120 EPM2AB3EWF7 344 aa11.18□□□□□ -0.62
PCDHA1-203ENST00000504120 ANKRD17O75179 2603 aaKnown RBP11.18□□□□□ -0.62
PCDHA1-203ENST00000504120 RTL8CO15255 209 aa11.16□□□□□ -0.62
PCDHA1-203ENST00000504120 C7orf65Q6ZTY9 151 aa11.16□□□□□ -0.62
PCDHA1-203ENST00000504120 MTORP42345 2549 aa11.15□□□□□ -0.62
PCDHA1-203ENST00000504120 ACYP2P14621 99 aa11.15□□□□□ -0.62
PCDHA1-203ENST00000504120 IGLV6-57P01721 117 aa11.15□□□□□ -0.62
PCDHA1-203ENST00000504120 DNAH10OSP0CZ25 163 aa11.15□□□□□ -0.62
PCDHA1-203ENST00000504120 ST20-AS1Q8NBB2 130 aa11.15□□□□□ -0.62
PCDHA1-203ENST00000504120 VPREB1P12018 145 aa11.14□□□□□ -0.63
PCDHA1-203ENST00000504120 Q6ZRP5 223 aa11.14□□□□□ -0.63
PCDHA1-203ENST00000504120 POLQO75417 2590 aa11.14□□□□□ -0.63
PCDHA1-203ENST00000504120 RPS28P62857 69 aaKnown RBP11.13□□□□□ -0.63
PCDHA1-203ENST00000504120 MUC4Q99102 2169 aa11.13□□□□□ -0.63
PCDHA1-203ENST00000504120 CSNK1G2-AS1Q8NCQ2 148 aa11.12□□□□□ -0.63
PCDHA1-203ENST00000504120 A0A1B0GU69 56 aa11.11□□□□□ -0.63
PCDHA1-203ENST00000504120 FASNP49327 2511 aaKnown RBP11.11□□□□□ -0.63
PCDHA1-203ENST00000504120 TRBV7-4A0A0J9YYF1 115 aa11.11□□□□□ -0.63
PCDHA1-203ENST00000504120 TRAV22A0A0B4J277 110 aa11.1□□□□□ -0.63
PCDHA1-203ENST00000504120 EPG5Q9HCE0 2579 aa11.09□□□□□ -0.63
PCDHA1-203ENST00000504120 PRO0628Q9UI54 55 aa11.08□□□□□ -0.63
PCDHA1-203ENST00000504120 CHD7Q9P2D1 2997 aa11.08□□□□□ -0.64
PCDHA1-203ENST00000504120 LINC00313P59037 77 aa11.08□□□□□ -0.64
PCDHA1-203ENST00000504120 TM2D3Q9BRN9 247 aa11.08□□□□□ -0.64
PCDHA1-203ENST00000504120 CHTF8P0CG12 524 aa11.07□□□□□ -0.64
PCDHA1-203ENST00000504120 A0A096LNT2 108 aa11.05□□□□□ -0.64
PCDHA1-203ENST00000504120 TYMSOSQ8TAI1 123 aa11.05□□□□□ -0.64
PCDHA1-203ENST00000504120 KCNQ1DNQ9H478 68 aa11.04□□□□□ -0.64
PCDHA1-203ENST00000504120 IGLV1-50A0A075B6I6 118 aa11.03□□□□□ -0.64
PCDHA1-203ENST00000504120 RPL37AP61513 92 aaKnown RBP11.03□□□□□ -0.64
PCDHA1-203ENST00000504120 FAM168BA1KXE4 195 aa11.02□□□□□ -0.65
PCDHA1-203ENST00000504120 SERTAD4-AS1Q5TG53 156 aa11.02□□□□□ -0.65
PCDHA1-203ENST00000504120 ACANP16112 2415 aa11.02□□□□□ -0.65
PCDHA1-203ENST00000504120 A8MWP4 228 aa11.01□□□□□ -0.65
PCDHA1-203ENST00000504120 FAM229AH3BQW9 127 aa11.01□□□□□ -0.65
PCDHA1-203ENST00000504120 SPAG11AQ6PDA7 123 aa11.01□□□□□ -0.65
PCDHA1-203ENST00000504120 PRR34Q9NV39 138 aa11.01□□□□□ -0.65
PCDHA1-203ENST00000504120 CHD9Q3L8U1 2897 aa11.01□□□□□ -0.65
PCDHA1-203ENST00000504120 LINC00528Q8N1L1 170 aa11□□□□□ -0.65
PCDHA1-203ENST00000504120 LOC101927531A0A1B0GV80 90 aa10.99□□□□□ -0.65
PCDHA1-203ENST00000504120 C8orf87E5RJ46 101 aa10.99□□□□□ -0.65
PCDHA1-203ENST00000504120 PRRC2CQ9Y520 2896 aaKnown RBP10.98□□□□□ -0.65
PCDHA1-203ENST00000504120 ERC2-IT1O76042 136 aa10.98□□□□□ -0.65
PCDHA1-203ENST00000504120 C4orf26Q17RF5 130 aa10.97□□□□□ -0.65
PCDHA1-203ENST00000504120 HTTP42858 3142 aa10.96□□□□□ -0.65
PCDHA1-203ENST00000504120 EIF4EBP3O60516 100 aaPredicted RBP10.96□□□□□ -0.65
PCDHA1-203ENST00000504120 C19orf73Q9NVV2 129 aa10.96□□□□□ -0.65
PCDHA1-203ENST00000504120 K7EQZ3 153 aa10.96□□□□□ -0.66
PCDHA1-203ENST00000504120 WWC2-AS2Q96NR7 200 aa10.96□□□□□ -0.66
PCDHA1-203ENST00000504120 GIG44P09565 113 aaPredicted RBP10.96□□□□□ -0.66
PCDHA1-203ENST00000504120 LINC00612Q8N6U2 182 aa10.96□□□□□ -0.66
PCDHA1-203ENST00000504120 C15orf56Q8N910 161 aa10.94□□□□□ -0.66
PCDHA1-203ENST00000504120 MRPL34Q9BQ48 92 aaKnown RBP10.94□□□□□ -0.66
PCDHA1-203ENST00000504120 KRTAP10-11P60412 298 aa10.93□□□□□ -0.66
PCDHA1-203ENST00000504120 Q96NJ1 140 aa10.92□□□□□ -0.66
PCDHA1-203ENST00000504120 K7EIL1 84 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms