RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 IGKV2-28A0A075B6P5 120 aa11.48□□□□□ -0.57
USP40-217ENST00000496298 IGKV2D-28P01615 120 aa11.48□□□□□ -0.57
USP40-217ENST00000496298 Q8NDZ9 215 aa11.48□□□□□ -0.57
USP40-217ENST00000496298 HSBP1O75506 76 aa11.47□□□□□ -0.57
USP40-217ENST00000496298 A0A087X002 238 aa11.46□□□□□ -0.57
USP40-217ENST00000496298 TRGC2P03986 189 aa11.46□□□□□ -0.57
USP40-217ENST00000496298 UBE2AP49459 152 aa11.46□□□□□ -0.57
USP40-217ENST00000496298 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.57
USP40-217ENST00000496298 CRYGAP11844 174 aa11.45□□□□□ -0.58
USP40-217ENST00000496298 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
USP40-217ENST00000496298 LPAP08519 4548 aa11.45□□□□□ -0.58
USP40-217ENST00000496298 LINC00158P58513 81 aa11.44□□□□□ -0.58
USP40-217ENST00000496298 LINC00310P59036 64 aa11.43□□□□□ -0.58
USP40-217ENST00000496298 TMEM238C9JI98 176 aa11.42□□□□□ -0.58
USP40-217ENST00000496298 M0R378 163 aa11.42□□□□□ -0.58
USP40-217ENST00000496298 FAM229BQ4G0N7 80 aa11.41□□□□□ -0.58
USP40-217ENST00000496298 SERF1AO75920 110 aa11.4□□□□□ -0.58
USP40-217ENST00000496298 HERV-K104P63124 156 aa11.4□□□□□ -0.58
USP40-217ENST00000496298 TYMSOSQ8TAI1 123 aa11.4□□□□□ -0.58
USP40-217ENST00000496298 ANAPC11Q9NYG5 84 aa11.4□□□□□ -0.58
USP40-217ENST00000496298 LEPROTL1O95214 131 aa11.39□□□□□ -0.59
USP40-217ENST00000496298 SMIM13P0DJ93 91 aa11.39□□□□□ -0.59
USP40-217ENST00000496298 PRLHP81277 87 aa11.39□□□□□ -0.59
USP40-217ENST00000496298 KRTAP13-2Q52LG2 175 aa11.39□□□□□ -0.59
USP40-217ENST00000496298 FAM19A1Q7Z5A9 133 aa11.39□□□□□ -0.59
USP40-217ENST00000496298 A0A0U1RRA0 63 aa11.38□□□□□ -0.59
USP40-217ENST00000496298 COLCA2A8K830 154 aa11.38□□□□□ -0.59
USP40-217ENST00000496298 LINC00587B1AMM8 73 aa11.37□□□□□ -0.59
USP40-217ENST00000496298 NDUFA12Q9UI09 145 aa11.37□□□□□ -0.59
USP40-217ENST00000496298 MYMXA0A1B0GTQ4 84 aa11.35□□□□□ -0.59
USP40-217ENST00000496298 MEIG1Q5JSS6 88 aa11.35□□□□□ -0.59
USP40-217ENST00000496298 MIR7-3HGQ8N6C7 128 aa11.35□□□□□ -0.59
USP40-217ENST00000496298 PLEKHB2Q96CS7 222 aa11.35□□□□□ -0.59
USP40-217ENST00000496298 H0Y8G0 127 aa11.34□□□□□ -0.59
USP40-217ENST00000496298 PLNP26678 52 aa11.34□□□□□ -0.59
USP40-217ENST00000496298 PRR4Q16378 134 aa11.34□□□□□ -0.59
USP40-217ENST00000496298 BOD1L2Q8IYS8 172 aa11.34□□□□□ -0.59
USP40-217ENST00000496298 HSPB8Q9UJY1 196 aa11.34□□□□□ -0.59
USP40-217ENST00000496298 LEPROTO15243 131 aa11.33□□□□□ -0.6
USP40-217ENST00000496298 TSPAN13O95857 204 aa11.33□□□□□ -0.6
USP40-217ENST00000496298 TSPEAR-AS2P59090 65 aa11.33□□□□□ -0.6
USP40-217ENST00000496298 IGKV2D-26A0A0A0MRZ7 120 aa11.32□□□□□ -0.6
USP40-217ENST00000496298 LOC107984156A0A0G2JMH3 177 aa11.32□□□□□ -0.6
USP40-217ENST00000496298 ARL17AQ8IVW1 177 aa11.32□□□□□ -0.6
USP40-217ENST00000496298 MAP1LC3CQ9BXW4 147 aa11.32□□□□□ -0.6
USP40-217ENST00000496298 KCNQ1DNQ9H478 68 aa11.31□□□□□ -0.6
USP40-217ENST00000496298 PRYO14603 147 aa11.3□□□□□ -0.6
USP40-217ENST00000496298 DPM2O94777 84 aa11.3□□□□□ -0.6
USP40-217ENST00000496298 FABP4P15090 132 aa11.3□□□□□ -0.6
USP40-217ENST00000496298 SPRR1AP35321 89 aa11.3□□□□□ -0.6
USP40-217ENST00000496298 J3QQQ9 107 aa11.28□□□□□ -0.6
USP40-217ENST00000496298 CTAG1AP78358 180 aa11.28□□□□□ -0.6
USP40-217ENST00000496298 LINC00337Q8N6G1 96 aa11.28□□□□□ -0.6
USP40-217ENST00000496298 KRTAP4-16G5E9R7 235 aaPredicted RBP11.27□□□□□ -0.61
USP40-217ENST00000496298 NCR3O14931 201 aa11.27□□□□□ -0.61
USP40-217ENST00000496298 IGKCP01834 107 aa11.27□□□□□ -0.61
USP40-217ENST00000496298 NMUP48645 174 aa11.27□□□□□ -0.61
USP40-217ENST00000496298 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.61
USP40-217ENST00000496298 HIGD2AQ9BW72 106 aa11.27□□□□□ -0.61
USP40-217ENST00000496298 HERVK_113P61574 105 aa11.26□□□□□ -0.61
USP40-217ENST00000496298 SPRR4Q96PI1 79 aa11.26□□□□□ -0.61
USP40-217ENST00000496298 PMCHL2Q9BQD1 86 aa11.26□□□□□ -0.61
USP40-217ENST00000496298 TRBV10-3A0A0K0K1G6 114 aa11.24□□□□□ -0.61
USP40-217ENST00000496298 TMA7Q9Y2S6 64 aaKnown RBP11.24□□□□□ -0.61
USP40-217ENST00000496298 TRBV10-2A0A0K0K1G8 114 aa11.23□□□□□ -0.61
USP40-217ENST00000496298 DAND5Q8N907 189 aa11.23□□□□□ -0.61
USP40-217ENST00000496298 LGALS3P17931 250 aaKnown RBP11.22□□□□□ -0.61
USP40-217ENST00000496298 C3orf22Q8N5N4 141 aa11.22□□□□□ -0.61
USP40-217ENST00000496298 ZNF706Q9Y5V0 76 aaPredicted RBP11.22□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BKO60814 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BJP06899 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BOP23527 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BBP33778 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BDP58876 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BCP62807 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST2H2BEQ16778 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BHQ93079 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BNQ99877 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 HIST1H2BMQ99879 126 aa11.21□□□□□ -0.61
USP40-217ENST00000496298 ETDCA0A1B0GVM5 59 aa11.2□□□□□ -0.62
USP40-217ENST00000496298 SMCR5Q8TEV8 140 aa11.2□□□□□ -0.62
USP40-217ENST00000496298 E9PLD3 99 aa11.19□□□□□ -0.62
USP40-217ENST00000496298 NDUFC2O95298 119 aa11.19□□□□□ -0.62
USP40-217ENST00000496298 SYS1-DBNDD2H3BUS1 97 aa11.18□□□□□ -0.62
USP40-217ENST00000496298 S100A12P80511 92 aa11.18□□□□□ -0.62
USP40-217ENST00000496298 SPANXB1Q9NS25 103 aaPredicted RBP11.18□□□□□ -0.62
USP40-217ENST00000496298 A0A0J9YXY3 114 aa11.17□□□□□ -0.62
USP40-217ENST00000496298 B5MCH6 92 aa11.17□□□□□ -0.62
USP40-217ENST00000496298 DDTP30046 118 aa11.17□□□□□ -0.62
USP40-217ENST00000496298 SPAG11AQ6PDA7 123 aa11.16□□□□□ -0.62
USP40-217ENST00000496298 MIEN1Q9BRT3 115 aa11.16□□□□□ -0.62
USP40-217ENST00000496298 IGLV6-57P01721 117 aa11.15□□□□□ -0.62
USP40-217ENST00000496298 LINC00483Q53H64 154 aa11.15□□□□□ -0.62
USP40-217ENST00000496298 ADAMTSL4-AS1Q5T5F5 129 aa11.15□□□□□ -0.62
USP40-217ENST00000496298 SOSTDC1Q6X4U4 206 aa11.15□□□□□ -0.62
USP40-217ENST00000496298 RETNLBQ9BQ08 111 aa11.15□□□□□ -0.62
USP40-217ENST00000496298 EIF4EBP3O60516 100 aaPredicted RBP11.14□□□□□ -0.63
USP40-217ENST00000496298 LINC01545Q5VT33 79 aa11.14□□□□□ -0.63
USP40-217ENST00000496298 MUC2Q02817 5179 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms