RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 KRTAP13-2Q52LG2 175 aa13.24□□□□□ -0.29
PTPN4-211ENST00000488279 LINC00158P58513 81 aa13.23□□□□□ -0.29
PTPN4-211ENST00000488279 M0R378 163 aa13.22□□□□□ -0.29
PTPN4-211ENST00000488279 Q8NDZ9 215 aa13.22□□□□□ -0.29
PTPN4-211ENST00000488279 CHCHD1Q96BP2 118 aaKnown RBP13.22□□□□□ -0.29
PTPN4-211ENST00000488279 IGKV2D-26A0A0A0MRZ7 120 aa13.21□□□□□ -0.29
PTPN4-211ENST00000488279 TRAV12-1A0A0B4J245 112 aa13.2□□□□□ -0.3
PTPN4-211ENST00000488279 TMEM223A0PJW6 202 aa13.2□□□□□ -0.3
PTPN4-211ENST00000488279 IFI27L1Q96BM0 104 aa13.2□□□□□ -0.3
PTPN4-211ENST00000488279 CBLN2Q8IUK8 224 aa13.18□□□□□ -0.3
PTPN4-211ENST00000488279 LINC00304Q8N9R0 145 aa13.18□□□□□ -0.3
PTPN4-211ENST00000488279 MUC2Q02817 5179 aa13.18□□□□□ -0.3
PTPN4-211ENST00000488279 A0A0U1RRA0 63 aa13.17□□□□□ -0.3
PTPN4-211ENST00000488279 PLEKHB2Q96CS7 222 aa13.17□□□□□ -0.3
PTPN4-211ENST00000488279 YPEL4Q96NS1 127 aa13.17□□□□□ -0.3
PTPN4-211ENST00000488279 ATP6V1G1O75348 118 aa13.16□□□□□ -0.3
PTPN4-211ENST00000488279 HIGD2AQ9BW72 106 aa13.14□□□□□ -0.31
PTPN4-211ENST00000488279 SMIM13P0DJ93 91 aa13.13□□□□□ -0.31
PTPN4-211ENST00000488279 HSBP1O75506 76 aa13.12□□□□□ -0.31
PTPN4-211ENST00000488279 MEIG1Q5JSS6 88 aa13.12□□□□□ -0.31
PTPN4-211ENST00000488279 HERV-K104P63124 156 aa13.11□□□□□ -0.31
PTPN4-211ENST00000488279 LINC00587B1AMM8 73 aa13.1□□□□□ -0.31
PTPN4-211ENST00000488279 CTAG1AP78358 180 aa13.1□□□□□ -0.31
PTPN4-211ENST00000488279 BOD1L2Q8IYS8 172 aa13.1□□□□□ -0.31
PTPN4-211ENST00000488279 FAM19A2Q8N3H0 131 aa13.1□□□□□ -0.31
PTPN4-211ENST00000488279 RETNLBQ9BQ08 111 aa13.1□□□□□ -0.31
PTPN4-211ENST00000488279 MIR7-3HGQ8N6C7 128 aa13.08□□□□□ -0.32
PTPN4-211ENST00000488279 NDUFA12Q9UI09 145 aa13.07□□□□□ -0.32
PTPN4-211ENST00000488279 MYMXA0A1B0GTQ4 84 aa13.06□□□□□ -0.32
PTPN4-211ENST00000488279 PRYO14603 147 aa13.06□□□□□ -0.32
PTPN4-211ENST00000488279 C3orf22Q8N5N4 141 aa13.06□□□□□ -0.32
PTPN4-211ENST00000488279 SPRR4Q96PI1 79 aa13.06□□□□□ -0.32
PTPN4-211ENST00000488279 H0Y8G0 127 aa13.05□□□□□ -0.32
PTPN4-211ENST00000488279 NCR3O14931 201 aa13.05□□□□□ -0.32
PTPN4-211ENST00000488279 MAP1LC3CQ9BXW4 147 aa13.05□□□□□ -0.32
PTPN4-211ENST00000488279 ZNF706Q9Y5V0 76 aaPredicted RBP13.05□□□□□ -0.32
PTPN4-211ENST00000488279 KCNQ1DNQ9H478 68 aa13.04□□□□□ -0.32
PTPN4-211ENST00000488279 A0A0U1RQV1 116 aa13.03□□□□□ -0.32
PTPN4-211ENST00000488279 TRGC2P03986 189 aa13.03□□□□□ -0.32
PTPN4-211ENST00000488279 LINC00337Q8N6G1 96 aa13.03□□□□□ -0.32
PTPN4-211ENST00000488279 LEPROTL1O95214 131 aa13.02□□□□□ -0.33
PTPN4-211ENST00000488279 SPAG11AQ6PDA7 123 aa13.02□□□□□ -0.33
PTPN4-211ENST00000488279 IGLV7-46A0A075B6I9 117 aa13.01□□□□□ -0.33
PTPN4-211ENST00000488279 SPRR1AP35321 89 aa13.01□□□□□ -0.33
PTPN4-211ENST00000488279 CDIP1Q9H305 208 aa13□□□□□ -0.33
PTPN4-211ENST00000488279 ETDCA0A1B0GVM5 59 aa12.99□□□□□ -0.33
PTPN4-211ENST00000488279 LEPROTO15243 131 aa12.99□□□□□ -0.33
PTPN4-211ENST00000488279 PLNP26678 52 aa12.99□□□□□ -0.33
PTPN4-211ENST00000488279 S100A12P80511 92 aa12.99□□□□□ -0.33
PTPN4-211ENST00000488279 TPRXLQ17RH7 258 aa12.99□□□□□ -0.33
PTPN4-211ENST00000488279 TRBV10-3A0A0K0K1G6 114 aa12.98□□□□□ -0.33
PTPN4-211ENST00000488279 SERF1AO75920 110 aa12.98□□□□□ -0.33
PTPN4-211ENST00000488279 C4orf48Q5BLP8 95 aa12.98□□□□□ -0.33
PTPN4-211ENST00000488279 SMCR5Q8TEV8 140 aa12.98□□□□□ -0.33
PTPN4-211ENST00000488279 KRTAP4-16G5E9R7 235 aaPredicted RBP12.97□□□□□ -0.33
PTPN4-211ENST00000488279 HSPB8Q9UJY1 196 aa12.97□□□□□ -0.33
PTPN4-211ENST00000488279 TSPEAR-AS2P59090 65 aa12.96□□□□□ -0.33
PTPN4-211ENST00000488279 LINC00310P59036 64 aa12.95□□□□□ -0.34
PTPN4-211ENST00000488279 LOC107984156A0A0G2JMH3 177 aa12.94□□□□□ -0.34
PTPN4-211ENST00000488279 J3QQQ9 107 aa12.94□□□□□ -0.34
PTPN4-211ENST00000488279 HERVK_113P61574 105 aa12.94□□□□□ -0.34
PTPN4-211ENST00000488279 ARL17AQ8IVW1 177 aa12.94□□□□□ -0.34
PTPN4-211ENST00000488279 DAND5Q8N907 189 aa12.94□□□□□ -0.34
PTPN4-211ENST00000488279 DPM2O94777 84 aa12.93□□□□□ -0.34
PTPN4-211ENST00000488279 FABP4P15090 132 aa12.93□□□□□ -0.34
PTPN4-211ENST00000488279 PPDPFQ9H3Y8 114 aa12.93□□□□□ -0.34
PTPN4-211ENST00000488279 Q8NBF4 154 aa12.92□□□□□ -0.34
PTPN4-211ENST00000488279 TRBV10-2A0A0K0K1G8 114 aa12.91□□□□□ -0.34
PTPN4-211ENST00000488279 DDTP30046 118 aa12.91□□□□□ -0.34
PTPN4-211ENST00000488279 NMUP48645 174 aa12.91□□□□□ -0.34
PTPN4-211ENST00000488279 MIEN1Q9BRT3 115 aa12.91□□□□□ -0.34
PTPN4-211ENST00000488279 B5MCH6 92 aa12.9□□□□□ -0.34
PTPN4-211ENST00000488279 IGKCP01834 107 aa12.9□□□□□ -0.34
PTPN4-211ENST00000488279 LGALS3P17931 250 aaKnown RBP12.9□□□□□ -0.34
PTPN4-211ENST00000488279 LINC00483Q53H64 154 aa12.89□□□□□ -0.35
PTPN4-211ENST00000488279 PMCHL2Q9BQD1 86 aa12.89□□□□□ -0.35
PTPN4-211ENST00000488279 GAGE2AQ6NT46 116 aa12.88□□□□□ -0.35
PTPN4-211ENST00000488279 FP248Q71RG6 208 aaPredicted RBP12.88□□□□□ -0.35
PTPN4-211ENST00000488279 SPANXB1Q9NS25 103 aaPredicted RBP12.88□□□□□ -0.35
PTPN4-211ENST00000488279 SPINK1P00995 79 aa12.87□□□□□ -0.35
PTPN4-211ENST00000488279 ERC2-IT1O76042 136 aa12.85□□□□□ -0.35
PTPN4-211ENST00000488279 NDUFC2O95298 119 aa12.85□□□□□ -0.35
PTPN4-211ENST00000488279 S100A7L2Q5SY68 101 aa12.85□□□□□ -0.35
PTPN4-211ENST00000488279 COLCA2A8K830 154 aa12.84□□□□□ -0.35
PTPN4-211ENST00000488279 Q6ZRX8 168 aa12.83□□□□□ -0.36
PTPN4-211ENST00000488279 SLC7A5P1Q8MH63 180 aa12.83□□□□□ -0.36
PTPN4-211ENST00000488279 Q9BRP9 147 aa12.83□□□□□ -0.36
PTPN4-211ENST00000488279 IGLV6-57P01721 117 aa12.82□□□□□ -0.36
PTPN4-211ENST00000488279 MUC17Q685J3 4493 aa12.82□□□□□ -0.36
PTPN4-211ENST00000488279 IGLV9-49A0A0B4J1Y8 123 aa12.81□□□□□ -0.36
PTPN4-211ENST00000488279 FAT4Q6V0I7 4981 aa12.81□□□□□ -0.36
PTPN4-211ENST00000488279 MOBPQ13875 183 aa12.8□□□□□ -0.36
PTPN4-211ENST00000488279 SSBP3-AS1Q7Z2R9 100 aa12.8□□□□□ -0.36
PTPN4-211ENST00000488279 A0A0J9YXY3 114 aa12.79□□□□□ -0.36
PTPN4-211ENST00000488279 JOSD1Q15040 202 aaPredicted RBP12.79□□□□□ -0.36
PTPN4-211ENST00000488279 ADAMTSL4-AS1Q5T5F5 129 aa12.79□□□□□ -0.36
PTPN4-211ENST00000488279 TRAV23DV6A0A075B6W5 121 aa12.78□□□□□ -0.36
PTPN4-211ENST00000488279 E9PLD3 99 aa12.78□□□□□ -0.36
PTPN4-211ENST00000488279 NPC2P61916 151 aa12.77□□□□□ -0.37
PTPN4-211ENST00000488279 SOSTDC1Q6X4U4 206 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms