RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 LINC01356Q8N9X3 169 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 CHCHD10Q8WYQ3 142 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-209ENST00000487188 CSMD2Q7Z408 3487 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 C4orf3Q8WVX3 66 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 NAV2Q8IVL1 2488 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 FAM229BQ4G0N7 80 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 USP9XQ93008 2570 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-209ENST00000487188 TLN2Q9Y4G6 2542 aa4.3□□□□□ -1.72
VPS13D-209ENST00000487188 PLAC8L1A1L4L8 177 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 PRB2P02812 416 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-209ENST00000487188 IL17DQ8TAD2 202 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 PMAIP1Q13794 54 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-209ENST00000487188 HIGD2AQ9BW72 106 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 CELA1Q9UNI1 258 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 DCHS2Q6V1P9 2916 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 CYSRT1A8MQ03 144 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 HIGD2BQ4VC39 106 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 CD164L2Q6UWJ8 174 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 C3orf84H3BNL1 204 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 CMC4P56277 68 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-209ENST00000487188 HIVEP2P31629 2446 aa4.29□□□□□ -1.72
VPS13D-209ENST00000487188 SETXQ7Z333 2677 aaKnown RBP4.28□□□□□ -1.72
VPS13D-209ENST00000487188 FN1P02751 2386 aaKnown RBP4.28□□□□□ -1.72
VPS13D-209ENST00000487188 JMJD1CQ15652 2540 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 ERC2-IT1O76042 136 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 FAM30AQ9NZY2 134 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 CRYBG3Q68DQ2 2970 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 ABCA12Q86UK0 2595 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 IGHV4-28A0A0C4DH34 117 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 C9orf66Q5T8R8 295 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 POLQO75417 2590 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 WFDC10AQ9H1F0 79 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 XAGE1AQ9HD64 81 aa4.28□□□□□ -1.72
VPS13D-209ENST00000487188 FBN2P35556 2912 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 PSPHP1O15172 72 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 REG3AQ06141 175 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 UNQ6190/PRO20217Q6UXQ8 127 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 CELSR2Q9HCU4 2923 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 ZNF73O43830 326 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-209ENST00000487188 USP9YO00507 2555 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-209ENST00000487188 HRNRQ86YZ3 2850 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-209ENST00000487188 DSCR9P59020 149 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 PRR4Q16378 134 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 VPS13CQ709C8 3753 aa4.27□□□□□ -1.73
VPS13D-209ENST00000487188 DEFB105AQ8NG35 78 aa4.26□□□□□ -1.73
VPS13D-209ENST00000487188 LINC01006Q8NI28 216 aa4.26□□□□□ -1.73
VPS13D-209ENST00000487188 CCL24O00175 119 aa4.26□□□□□ -1.73
VPS13D-209ENST00000487188 A0A1B0GUV1 79 aa4.26□□□□□ -1.73
VPS13D-209ENST00000487188 Q6YL49 198 aa4.26□□□□□ -1.73
VPS13D-209ENST00000487188 HTN3P15516 51 aa4.25□□□□□ -1.73
VPS13D-209ENST00000487188 PRO0255Q9UI72 69 aa4.25□□□□□ -1.73
VPS13D-209ENST00000487188 ZNF469Q96JG9 3925 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-209ENST00000487188 DOPEY1Q5JWR5 2465 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 IGKV4-1P06312 121 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 KIAA0087Q14695 138 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 SMIM29Q86T20 159 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 ESM1Q9NQ30 184 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 C10orf25Q5T742 122 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 MRPL55Q7Z7F7 128 aaKnown RBP4.24□□□□□ -1.73
VPS13D-209ENST00000487188 IGLV6-57P01721 117 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 Q8NDZ9 215 aa4.24□□□□□ -1.73
VPS13D-209ENST00000487188 SETD2Q9BYW2 2564 aaPredicted RBP4.24□□□□□ -1.73
VPS13D-209ENST00000487188 PDZD2O15018 2839 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 PRR15Q8IV56 129 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 RETNQ9HD89 108 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 OCR1Q9BZK8 76 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 KLK12Q9UKR0 248 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 HECTD1Q9ULT8 2610 aa4.23□□□□□ -1.73
VPS13D-209ENST00000487188 CAMK2N2Q96S95 79 aa4.22□□□□□ -1.73
VPS13D-209ENST00000487188 MAP1AP78559 2803 aaPredicted RBP4.22□□□□□ -1.73
VPS13D-209ENST00000487188 hDV103S1A0JD37 113 aa4.22□□□□□ -1.73
VPS13D-209ENST00000487188 Q6ZTC4 211 aa4.22□□□□□ -1.73
VPS13D-209ENST00000487188 ELOF1P60002 83 aaKnown RBP4.21□□□□□ -1.73
VPS13D-209ENST00000487188 C1orf64Q8NEQ6 169 aa4.21□□□□□ -1.73
VPS13D-209ENST00000487188 SPTSSBQ8NFR3 76 aa4.21□□□□□ -1.73
VPS13D-209ENST00000487188 APCP25054 2843 aa4.21□□□□□ -1.74
VPS13D-209ENST00000487188 UNC79Q9P2D8 2635 aa4.21□□□□□ -1.74
VPS13D-209ENST00000487188 NKAPP1Q8N9T2 125 aa4.21□□□□□ -1.74
VPS13D-209ENST00000487188 ITPR2Q14571 2701 aa4.21□□□□□ -1.74
VPS13D-209ENST00000487188 MP68P56378 58 aa4.21□□□□□ -1.74
VPS13D-209ENST00000487188 ETDCA0A1B0GVM5 59 aa4.2□□□□□ -1.74
VPS13D-209ENST00000487188 M0R378 163 aa4.2□□□□□ -1.74
VPS13D-209ENST00000487188 GIG44P09565 113 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-209ENST00000487188 UBE2BP63146 152 aa4.2□□□□□ -1.74
VPS13D-209ENST00000487188 DEFB4AO15263 64 aa4.2□□□□□ -1.74
VPS13D-209ENST00000487188 CHKB-CPT1BH3BT56 60 aa4.2□□□□□ -1.74
VPS13D-209ENST00000487188 TRAV22A0A0B4J277 110 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 OTOGQ6ZRI0 2925 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 CENPEQ02224 2701 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 MTORP42345 2549 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 SVEP1Q4LDE5 3571 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 A8MUN3 132 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 Q1T7F1 81 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 Q6ZRP5 223 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 CR1P17927 2039 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 A0A0J9YWU9 116 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 IGHV4-30-4P0DP06 118 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 IGHV4-31P0DP07 118 aa4.19□□□□□ -1.74
VPS13D-209ENST00000487188 UBE2AP49459 152 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms