RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 POLA1P09884 1462 aaPredicted RBP-0.6□□□□□ -2.5
VPS50-216ENST00000484954 GAPVD1Q14C86 1478 aa-0.6□□□□□ -2.5
VPS50-216ENST00000484954 ADAMTS12P58397 1594 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 CEP250Q9BV73 2442 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 TRBV7-4A0A0J9YYF1 115 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 CPSF4LA6NMK7 179 aaKnown RBP-0.6□□□□□ -2.51
VPS50-216ENST00000484954 AKAIN1P0CW23 69 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 DEFA5Q01523 94 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 FAM223AQ8IWN6 122 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 LCN9Q8WX39 176 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 FAM107BQ9H098 131 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 ARL2-SNX15V9GYD0 113 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 KDM5AP29375 1690 aaKnown RBP-0.6□□□□□ -2.51
VPS50-216ENST00000484954 HMGXB3Q12766 1538 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 SPTAN1Q13813 2472 aaKnown RBP-0.6□□□□□ -2.51
VPS50-216ENST00000484954 PTPN23Q9H3S7 1636 aa-0.6□□□□□ -2.51
VPS50-216ENST00000484954 VPS13AQ96RL7 3174 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 COL4A6Q14031 1691 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 KIF21AQ7Z4S6 1674 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 H3BNG1 76 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 KRTAP19-5Q3LI72 72 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 C1orf54Q8WWF1 131 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 FAM167A-AS1Q96KT0 104 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 LINC01600Q96MT4 127 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 CRIPTQ9P021 101 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 FRYLO94915 3013 aa-0.61□□□□□ -2.51
VPS50-216ENST00000484954 ROCK2O75116 1388 aaKnown RBP-0.61□□□□□ -2.51
VPS50-216ENST00000484954 DNAH10Q8IVF4 4471 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 PAPPA2Q9BXP8 1791 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 BRCA2P51587 3418 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 KIAA0556O60303 1618 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 UBE2L5PA0A1B0GUS4 154 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 UBA52P62987 128 aaKnown RBP-0.62□□□□□ -2.51
VPS50-216ENST00000484954 UBE2L3P68036 154 aaKnown RBP-0.62□□□□□ -2.51
VPS50-216ENST00000484954 WHAMMP3Q1A5X7 153 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 C9orf153Q5TBE3 101 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 TSC22D3Q99576 134 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 FMN2Q9NZ56 1722 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 A2ML1A8K2U0 1454 aa-0.62□□□□□ -2.51
VPS50-216ENST00000484954 NAIPQ13075 1403 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 SMG6Q86US8 1419 aaKnown RBP-0.63□□□□□ -2.51
VPS50-216ENST00000484954 FOCADQ5VW36 1801 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 H0YAA0 97 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 COX8AP10176 69 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 GNG11P61952 73 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 MT1XP80297 61 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 Q0VG73 95 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 FAIMQ9NVQ4 179 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 IER3IP1Q9Y5U9 82 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 GOLGB1Q14789 3259 aaKnown RBP-0.63□□□□□ -2.51
VPS50-216ENST00000484954 ASPMQ8IZT6 3477 aa-0.63□□□□□ -2.51
VPS50-216ENST00000484954 SLIT1O75093 1534 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 RAPGEF6Q8TEU7 1601 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 UNC13AQ9UPW8 1703 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 SBF2Q86WG5 1849 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 SPEF2Q9C093 1822 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 NKTRP30414 1462 aaKnown RBP-0.64□□□□□ -2.51
VPS50-216ENST00000484954 MAGI1Q96QZ7 1491 aaPredicted RBP-0.64□□□□□ -2.51
VPS50-216ENST00000484954 H0YGG7 62 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 SYS1-DBNDD2H3BUS1 97 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 UBE2D3P61077 147 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 UBE2D2P62837 147 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 SFTA2Q6UW10 78 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 USMG5Q96IX5 58 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 UQCR10Q9UDW1 63 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 DMDP11532 3685 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 MYH8P13535 1937 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 PHLPP1O60346 1717 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 ARHGEF12Q9NZN5 1544 aa-0.64□□□□□ -2.51
VPS50-216ENST00000484954 TET3O43151 1660 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 MYOM1P52179 1685 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 ARHGEF5Q12774 1597 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 SETBP1Q9Y6X0 1596 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 ADGRL2O95490 1459 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 XIRP2A4UGR9 3374 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 A0A1B0GV90 55 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 C9orf92A6NGG3 77 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 FAM223BA6NKX1 122 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 F6UZH7 168 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 MT1BP07438 61 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 RPL13AP3Q6NVV1 102 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 WFDC13Q8IUB5 93 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 FDCSPQ8NFU4 85 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 MANBALQ9NQG1 85 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 CICQ96RK0 1608 aaPredicted RBP-0.65□□□□□ -2.51
VPS50-216ENST00000484954 QRICH2Q9H0J4 1663 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 ROBO1Q9Y6N7 1651 aa-0.65□□□□□ -2.51
VPS50-216ENST00000484954 BTAF1O14981 1849 aa-0.66□□□□□ -2.51
VPS50-216ENST00000484954 KTN1Q86UP2 1357 aaKnown RBP-0.66□□□□□ -2.51
VPS50-216ENST00000484954 FAM24AA6NFZ4 105 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 DLEU1O43261 78 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 DEFB1P60022 68 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 LINC00846Q9NV44 126 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 SCAPERQ9BY12 1400 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 PSME4Q14997 1843 aa-0.66□□□□□ -2.52
VPS50-216ENST00000484954 MARF1Q9Y4F3 1742 aaKnown RBP-0.67□□□□□ -2.52
VPS50-216ENST00000484954 A0A1B0GWA3 101 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 CORTO00230 105 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 SNAPC5O75971 98 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 SMR3BP02814 79 aaPredicted RBP-0.67□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms