RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 CDKN2A-AS1Q9UH64 79 aa-2.75□□□□□ -2.85
PRPF40A-207ENST00000471701 CMYA5Q8N3K9 4069 aa-2.75□□□□□ -2.85
PRPF40A-207ENST00000471701 LINC00470Q9BZP3 86 aa-2.76□□□□□ -2.85
PRPF40A-207ENST00000471701 ANKRD36A6QL64 1941 aa-2.76□□□□□ -2.85
PRPF40A-207ENST00000471701 NBEAQ8NFP9 2946 aa-2.76□□□□□ -2.85
PRPF40A-207ENST00000471701 COX6CP09669 75 aa-2.77□□□□□ -2.85
PRPF40A-207ENST00000471701 UBE2L5PA0A1B0GUS4 154 aa-2.78□□□□□ -2.85
PRPF40A-207ENST00000471701 UBE2L3P68036 154 aaKnown RBP-2.78□□□□□ -2.85
PRPF40A-207ENST00000471701 ZNF436-AS1Q8NC38 126 aaPredicted RBP-2.78□□□□□ -2.85
PRPF40A-207ENST00000471701 PDE4DIPQ5VU43 2346 aa-2.78□□□□□ -2.85
PRPF40A-207ENST00000471701 HIGD1BQ9P298 99 aa-2.79□□□□□ -2.86
PRPF40A-207ENST00000471701 F6UZH7 168 aa-2.8□□□□□ -2.86
PRPF40A-207ENST00000471701 C12orf57Q99622 126 aa-2.8□□□□□ -2.86
PRPF40A-207ENST00000471701 PRO1854Q9UHT4 67 aa-2.8□□□□□ -2.86
PRPF40A-207ENST00000471701 TARBP1Q13395 1621 aaKnown RBP-2.8□□□□□ -2.86
PRPF40A-207ENST00000471701 TRIOO75962 3097 aa-2.8□□□□□ -2.86
PRPF40A-207ENST00000471701 UTP20O75691 2785 aaKnown RBP-2.81□□□□□ -2.86
PRPF40A-207ENST00000471701 KNDC1Q76NI1 1749 aa-2.81□□□□□ -2.86
PRPF40A-207ENST00000471701 SCAPERQ9BY12 1400 aa-2.81□□□□□ -2.86
PRPF40A-207ENST00000471701 SELENOWP63302 87 aa-2.81□□□□□ -2.86
PRPF40A-207ENST00000471701 A2ML1A8K2U0 1454 aa-2.82□□□□□ -2.86
PRPF40A-207ENST00000471701 HSD52Q0P140 79 aa-2.82□□□□□ -2.86
PRPF40A-207ENST00000471701 DPH3P1Q9H4G8 78 aa-2.82□□□□□ -2.86
PRPF40A-207ENST00000471701 DNAH7Q8WXX0 4024 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 CUX1P39880 1505 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 KTN1Q86UP2 1357 aaKnown RBP-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 DEFB107AQ8IZN7 70 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 PAIP2BQ9ULR5 123 aaKnown RBP-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 BCORQ6W2J9 1755 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 MTORP42345 2549 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 PKD1L2Q7Z442 2459 aa-2.83□□□□□ -2.86
PRPF40A-207ENST00000471701 ANKRD50Q9ULJ7 1429 aa-2.84□□□□□ -2.86
PRPF40A-207ENST00000471701 RELNP78509 3460 aa-2.84□□□□□ -2.86
PRPF40A-207ENST00000471701 C9orf92A6NGG3 77 aa-2.84□□□□□ -2.86
PRPF40A-207ENST00000471701 CLIP1P30622 1438 aa-2.85□□□□□ -2.86
PRPF40A-207ENST00000471701 NAIPQ13075 1403 aa-2.85□□□□□ -2.86
PRPF40A-207ENST00000471701 A0A0G2JND7 137 aa-2.85□□□□□ -2.87
PRPF40A-207ENST00000471701 SPTY2D1-AS1A0A0U1RR47 76 aa-2.85□□□□□ -2.87
PRPF40A-207ENST00000471701 FGF7P21781 194 aa-2.85□□□□□ -2.87
PRPF40A-207ENST00000471701 ATP5EP56381 51 aaPredicted RBP-2.85□□□□□ -2.87
PRPF40A-207ENST00000471701 CUL7Q14999 1698 aa-2.85□□□□□ -2.87
PRPF40A-207ENST00000471701 LRRK2Q5S007 2527 aa-2.86□□□□□ -2.87
PRPF40A-207ENST00000471701 RGPD2P0DJD1 1756 aa-2.86□□□□□ -2.87
PRPF40A-207ENST00000471701 H0Y9P7 68 aa-2.86□□□□□ -2.87
PRPF40A-207ENST00000471701 C7orf77A4D0Y5 90 aa-2.87□□□□□ -2.87
PRPF40A-207ENST00000471701 H3BQF6 201 aa-2.87□□□□□ -2.87
PRPF40A-207ENST00000471701 K7EP13 123 aa-2.87□□□□□ -2.87
PRPF40A-207ENST00000471701 GNGT1P63211 74 aa-2.88□□□□□ -2.87
PRPF40A-207ENST00000471701 LOC105371267A0A1B0GV96 52 aa-2.89□□□□□ -2.87
PRPF40A-207ENST00000471701 NAP1L6A6NFF2 107 aa-2.89□□□□□ -2.87
PRPF40A-207ENST00000471701 DEFA5Q01523 94 aa-2.89□□□□□ -2.87
PRPF40A-207ENST00000471701 SHPRHQ149N8 1683 aa-2.89□□□□□ -2.87
PRPF40A-207ENST00000471701 DNAH8Q96JB1 4490 aa-2.9□□□□□ -2.87
PRPF40A-207ENST00000471701 CCDC168Q8NDH2 2452 aa-2.91□□□□□ -2.87
PRPF40A-207ENST00000471701 TRBV7-7A0A0K0K1E9 115 aa-2.91□□□□□ -2.88
PRPF40A-207ENST00000471701 FAM24AA6NFZ4 105 aa-2.91□□□□□ -2.88
PRPF40A-207ENST00000471701 CRYM-AS1A6NIL9 109 aa-2.91□□□□□ -2.88
PRPF40A-207ENST00000471701 ARMS2P0C7Q2 107 aa-2.91□□□□□ -2.88
PRPF40A-207ENST00000471701 AKAIN1P0CW23 69 aa-2.91□□□□□ -2.88
PRPF40A-207ENST00000471701 MON2Q7Z3U7 1717 aa-2.92□□□□□ -2.88
PRPF40A-207ENST00000471701 ASIPP42127 132 aa-2.93□□□□□ -2.88
PRPF40A-207ENST00000471701 MT1HP80294 61 aa-2.93□□□□□ -2.88
PRPF40A-207ENST00000471701 NBEAL2Q6ZNJ1 2754 aa-2.93□□□□□ -2.88
PRPF40A-207ENST00000471701 DYNC1H1Q14204 4646 aaKnown RBP-2.94□□□□□ -2.88
PRPF40A-207ENST00000471701 PP6455Q8WZ26 134 aa-2.94□□□□□ -2.88
PRPF40A-207ENST00000471701 MAPKBP1O60336 1514 aa-2.94□□□□□ -2.88
PRPF40A-207ENST00000471701 CHD1O14646 1710 aa-2.95□□□□□ -2.88
PRPF40A-207ENST00000471701 C4AP0C0L4 1744 aa-2.95□□□□□ -2.88
PRPF40A-207ENST00000471701 C4BP0C0L5 1744 aa-2.95□□□□□ -2.88
PRPF40A-207ENST00000471701 VAMP8Q9BV40 100 aa-2.95□□□□□ -2.88
PRPF40A-207ENST00000471701 USP9XQ93008 2570 aaPredicted RBP-2.95□□□□□ -2.88
PRPF40A-207ENST00000471701 FAM186AA6NE01 2351 aa-2.96□□□□□ -2.88
PRPF40A-207ENST00000471701 C5P01031 1676 aa-2.96□□□□□ -2.88
PRPF40A-207ENST00000471701 CC2D2AQ9P2K1 1620 aa-2.97□□□□□ -2.88
PRPF40A-207ENST00000471701 TOPAZ1Q8N9V7 1692 aa-2.97□□□□□ -2.88
PRPF40A-207ENST00000471701 NDUFA2O43678 99 aa-2.97□□□□□ -2.88
PRPF40A-207ENST00000471701 TMEM262E9PQX1 116 aa-2.98□□□□□ -2.89
PRPF40A-207ENST00000471701 KIF20BQ96Q89 1820 aa-2.98□□□□□ -2.89
PRPF40A-207ENST00000471701 ARHGAP5Q13017 1502 aa-2.98□□□□□ -2.89
PRPF40A-207ENST00000471701 MYOM2P54296 1465 aa-2.99□□□□□ -2.89
PRPF40A-207ENST00000471701 PREX1Q8TCU6 1659 aa-2.99□□□□□ -2.89
PRPF40A-207ENST00000471701 RIF1Q5UIP0 2472 aaKnown RBP-2.99□□□□□ -2.89
PRPF40A-207ENST00000471701 SAMD9Q5K651 1589 aa-3□□□□□ -2.89
PRPF40A-207ENST00000471701 SNAPC5O75971 98 aa-3□□□□□ -2.89
PRPF40A-207ENST00000471701 CGREF1Q99674 301 aa-3□□□□□ -2.89
PRPF40A-207ENST00000471701 MAP3K1Q13233 1512 aa-3□□□□□ -2.89
PRPF40A-207ENST00000471701 DSPP15924 2871 aaKnown RBP-3□□□□□ -2.89
PRPF40A-207ENST00000471701 RANBP2P49792 3224 aaKnown RBP-3□□□□□ -2.89
PRPF40A-207ENST00000471701 PSENENQ9NZ42 101 aa-3.01□□□□□ -2.89
PRPF40A-207ENST00000471701 FRYQ5TBA9 3013 aa-3.02□□□□□ -2.89
PRPF40A-207ENST00000471701 PSMG4Q5JS54 123 aa-3.02□□□□□ -2.89
PRPF40A-207ENST00000471701 S4R3F8 94 aa-3.02□□□□□ -2.89
PRPF40A-207ENST00000471701 ACACBO00763 2458 aa-3.03□□□□□ -2.89
PRPF40A-207ENST00000471701 NDUFA3O95167 84 aa-3.03□□□□□ -2.89
PRPF40A-207ENST00000471701 CCDC58Q4VC31 144 aa-3.03□□□□□ -2.89
PRPF40A-207ENST00000471701 NMSQ5H8A3 153 aa-3.04□□□□□ -2.9
PRPF40A-207ENST00000471701 ALKQ9UM73 1620 aa-3.04□□□□□ -2.9
PRPF40A-207ENST00000471701 SPHKAPQ2M3C7 1700 aa-3.05□□□□□ -2.9
PRPF40A-207ENST00000471701 SVBPQ8N300 66 aa-3.05□□□□□ -2.9
PRPF40A-207ENST00000471701 C1orf54Q8WWF1 131 aa-3.05□□□□□ -2.9
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms