RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 PLEKHB2Q96CS7 222 aa14.17□□□□□ -0.14
PTCH1-210ENST00000468211 C3orf22Q8N5N4 141 aa14.14□□□□□ -0.15
PTCH1-210ENST00000468211 CHTOPQ9Y3Y2 248 aaKnown RBP14.14□□□□□ -0.15
PTCH1-210ENST00000468211 A0A0U1RRA0 63 aa14.13□□□□□ -0.15
PTCH1-210ENST00000468211 LINC00158P58513 81 aa14.12□□□□□ -0.15
PTCH1-210ENST00000468211 SFTA2Q6UW10 78 aa14.12□□□□□ -0.15
PTCH1-210ENST00000468211 CBLN2Q8IUK8 224 aa14.12□□□□□ -0.15
PTCH1-210ENST00000468211 TMEM223A0PJW6 202 aa14.11□□□□□ -0.15
PTCH1-210ENST00000468211 APOC3P02656 99 aa14.11□□□□□ -0.15
PTCH1-210ENST00000468211 HIGD2AQ9BW72 106 aa14.1□□□□□ -0.15
PTCH1-210ENST00000468211 MUC17Q685J3 4493 aa14.06□□□□□ -0.16
PTCH1-210ENST00000468211 TRAV12-1A0A0B4J245 112 aa14.06□□□□□ -0.16
PTCH1-210ENST00000468211 SMIM13P0DJ93 91 aa14.06□□□□□ -0.16
PTCH1-210ENST00000468211 YPEL4Q96NS1 127 aa14.06□□□□□ -0.16
PTCH1-210ENST00000468211 FAT4Q6V0I7 4981 aa14.05□□□□□ -0.16
PTCH1-210ENST00000468211 IGLV7-46A0A075B6I9 117 aa14.05□□□□□ -0.16
PTCH1-210ENST00000468211 A0A0U1RQV1 116 aa14.05□□□□□ -0.16
PTCH1-210ENST00000468211 IFI27L1Q96BM0 104 aa14.05□□□□□ -0.16
PTCH1-210ENST00000468211 SPRR4Q96PI1 79 aa14.05□□□□□ -0.16
PTCH1-210ENST00000468211 TPRXLQ17RH7 258 aa14.04□□□□□ -0.16
PTCH1-210ENST00000468211 SNAPINO95295 136 aa14.03□□□□□ -0.16
PTCH1-210ENST00000468211 CHCHD1Q96BP2 118 aaKnown RBP14.03□□□□□ -0.16
PTCH1-210ENST00000468211 BOD1L2Q8IYS8 172 aa14.02□□□□□ -0.17
PTCH1-210ENST00000468211 CDIP1Q9H305 208 aa14.02□□□□□ -0.17
PTCH1-210ENST00000468211 CTAG1AP78358 180 aa14.01□□□□□ -0.17
PTCH1-210ENST00000468211 SVBPQ8N300 66 aa14.01□□□□□ -0.17
PTCH1-210ENST00000468211 NCR3O14931 201 aa14□□□□□ -0.17
PTCH1-210ENST00000468211 MIR7-3HGQ8N6C7 128 aa14□□□□□ -0.17
PTCH1-210ENST00000468211 MEIG1Q5JSS6 88 aa13.99□□□□□ -0.17
PTCH1-210ENST00000468211 LCE2AQ5TA79 106 aaPredicted RBP13.99□□□□□ -0.17
PTCH1-210ENST00000468211 FAM19A2Q8N3H0 131 aa13.99□□□□□ -0.17
PTCH1-210ENST00000468211 PRYO14603 147 aa13.98□□□□□ -0.17
PTCH1-210ENST00000468211 SPRR1AP35321 89 aa13.98□□□□□ -0.17
PTCH1-210ENST00000468211 KRTAP4-16G5E9R7 235 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-210ENST00000468211 ATP6V1G1O75348 118 aa13.97□□□□□ -0.17
PTCH1-210ENST00000468211 NDUFA5Q16718 116 aa13.97□□□□□ -0.17
PTCH1-210ENST00000468211 PPDPFQ9H3Y8 114 aa13.96□□□□□ -0.17
PTCH1-210ENST00000468211 KCNQ1DNQ9H478 68 aa13.96□□□□□ -0.17
PTCH1-210ENST00000468211 LINC00337Q8N6G1 96 aa13.95□□□□□ -0.18
PTCH1-210ENST00000468211 DAND5Q8N907 189 aa13.95□□□□□ -0.18
PTCH1-210ENST00000468211 SMCR5Q8TEV8 140 aa13.95□□□□□ -0.18
PTCH1-210ENST00000468211 NDUFA12Q9UI09 145 aa13.95□□□□□ -0.18
PTCH1-210ENST00000468211 TRBV10-3A0A0K0K1G6 114 aa13.94□□□□□ -0.18
PTCH1-210ENST00000468211 HERV-K104P63124 156 aa13.94□□□□□ -0.18
PTCH1-210ENST00000468211 SPAG11AQ6PDA7 123 aa13.94□□□□□ -0.18
PTCH1-210ENST00000468211 ZNF706Q9Y5V0 76 aaPredicted RBP13.94□□□□□ -0.18
PTCH1-210ENST00000468211 TSPEAR-AS2P59090 65 aa13.93□□□□□ -0.18
PTCH1-210ENST00000468211 Q8NBF4 154 aa13.92□□□□□ -0.18
PTCH1-210ENST00000468211 H0Y8G0 127 aa13.91□□□□□ -0.18
PTCH1-210ENST00000468211 HSBP1O75506 76 aa13.91□□□□□ -0.18
PTCH1-210ENST00000468211 MYMXA0A1B0GTQ4 84 aa13.89□□□□□ -0.19
PTCH1-210ENST00000468211 ETDCA0A1B0GVM5 59 aa13.89□□□□□ -0.19
PTCH1-210ENST00000468211 KRTAP9-2Q9BYQ4 174 aa13.89□□□□□ -0.19
PTCH1-210ENST00000468211 LINC00310P59036 64 aa13.88□□□□□ -0.19
PTCH1-210ENST00000468211 C4orf48Q5BLP8 95 aa13.87□□□□□ -0.19
PTCH1-210ENST00000468211 LINC00587B1AMM8 73 aa13.86□□□□□ -0.19
PTCH1-210ENST00000468211 LINC00483Q53H64 154 aa13.86□□□□□ -0.19
PTCH1-210ENST00000468211 B5MCH6 92 aa13.85□□□□□ -0.19
PTCH1-210ENST00000468211 ERC2-IT1O76042 136 aa13.85□□□□□ -0.19
PTCH1-210ENST00000468211 MAP1LC3CQ9BXW4 147 aa13.85□□□□□ -0.19
PTCH1-210ENST00000468211 LOC107984156A0A0G2JMH3 177 aa13.84□□□□□ -0.19
PTCH1-210ENST00000468211 LEPROTO15243 131 aa13.84□□□□□ -0.19
PTCH1-210ENST00000468211 TRGC2P03986 189 aa13.84□□□□□ -0.19
PTCH1-210ENST00000468211 FP248Q71RG6 208 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-210ENST00000468211 ARL17AQ8IVW1 177 aa13.84□□□□□ -0.19
PTCH1-210ENST00000468211 SERF1AO75920 110 aa13.83□□□□□ -0.2
PTCH1-210ENST00000468211 LEPROTL1O95214 131 aa13.83□□□□□ -0.2
PTCH1-210ENST00000468211 GAGE2AQ6NT46 116 aa13.83□□□□□ -0.2
PTCH1-210ENST00000468211 KRTAP13-3Q3SY46 172 aa13.82□□□□□ -0.2
PTCH1-210ENST00000468211 DDTP30046 118 aa13.8□□□□□ -0.2
PTCH1-210ENST00000468211 PMCHL2Q9BQD1 86 aa13.8□□□□□ -0.2
PTCH1-210ENST00000468211 Q9BRP9 147 aa13.8□□□□□ -0.2
PTCH1-210ENST00000468211 J3QQQ9 107 aa13.79□□□□□ -0.2
PTCH1-210ENST00000468211 SPINK1P00995 79 aa13.79□□□□□ -0.2
PTCH1-210ENST00000468211 TRBV10-2A0A0K0K1G8 114 aa13.78□□□□□ -0.2
PTCH1-210ENST00000468211 IGLV9-49A0A0B4J1Y8 123 aa13.77□□□□□ -0.21
PTCH1-210ENST00000468211 PLNP26678 52 aa13.77□□□□□ -0.21
PTCH1-210ENST00000468211 MOBPQ13875 183 aa13.77□□□□□ -0.21
PTCH1-210ENST00000468211 FABP4P15090 132 aa13.76□□□□□ -0.21
PTCH1-210ENST00000468211 S100A12P80511 92 aa13.76□□□□□ -0.21
PTCH1-210ENST00000468211 DPM2O94777 84 aa13.75□□□□□ -0.21
PTCH1-210ENST00000468211 Q6ZRX8 168 aa13.75□□□□□ -0.21
PTCH1-210ENST00000468211 EIF4EBP3O60516 100 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-210ENST00000468211 SPANXB1Q9NS25 103 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-210ENST00000468211 IGLV6-57P01721 117 aa13.73□□□□□ -0.21
PTCH1-210ENST00000468211 SOSTDC1Q6X4U4 206 aa13.73□□□□□ -0.21
PTCH1-210ENST00000468211 IGKCP01834 107 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 LGALS3P17931 250 aaKnown RBP13.71□□□□□ -0.21
PTCH1-210ENST00000468211 NMUP48645 174 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 HERVK_113P61574 105 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 SSBP3-AS1Q7Z2R9 100 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 Q8N377 158 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 HSPB8Q9UJY1 196 aa13.71□□□□□ -0.21
PTCH1-210ENST00000468211 NDUFC2O95298 119 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 NPC2P61916 151 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 ASB16-AS1Q495Z4 193 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 ADAMTSL4-AS1Q5T5F5 129 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 MIEN1Q9BRT3 115 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 KRTAP4-1Q9BYQ7 146 aa13.7□□□□□ -0.22
PTCH1-210ENST00000468211 S100A7L2Q5SY68 101 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms