RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 CBLN2Q8IUK8 224 aa12.17□□□□□ -0.46
COL9A3-207ENST00000467819 C3orf22Q8N5N4 141 aa12.17□□□□□ -0.46
COL9A3-207ENST00000467819 PLEKHB2Q96CS7 222 aa12.17□□□□□ -0.46
COL9A3-207ENST00000467819 BAGE3Q86Y29 109 aa12.16□□□□□ -0.46
COL9A3-207ENST00000467819 HIGD2AQ9BW72 106 aa12.16□□□□□ -0.46
COL9A3-207ENST00000467819 CDIP1Q9H305 208 aa12.16□□□□□ -0.46
COL9A3-207ENST00000467819 TRAPPC1Q9Y5R8 145 aa12.16□□□□□ -0.46
COL9A3-207ENST00000467819 FAT4Q6V0I7 4981 aa12.15□□□□□ -0.46
COL9A3-207ENST00000467819 IGLV7-46A0A075B6I9 117 aa12.14□□□□□ -0.47
COL9A3-207ENST00000467819 SFTA2Q6UW10 78 aa12.14□□□□□ -0.47
COL9A3-207ENST00000467819 LINC00158P58513 81 aa12.13□□□□□ -0.47
COL9A3-207ENST00000467819 TPRXLQ17RH7 258 aa12.13□□□□□ -0.47
COL9A3-207ENST00000467819 C10orf91Q5T1B1 145 aa12.13□□□□□ -0.47
COL9A3-207ENST00000467819 A0A0U1RRA0 63 aa12.12□□□□□ -0.47
COL9A3-207ENST00000467819 CHTOPQ9Y3Y2 248 aaKnown RBP12.1□□□□□ -0.47
COL9A3-207ENST00000467819 CTAG1AP78358 180 aa12.09□□□□□ -0.47
COL9A3-207ENST00000467819 LCE2AQ5TA79 106 aaPredicted RBP12.08□□□□□ -0.48
COL9A3-207ENST00000467819 SPRR4Q96PI1 79 aa12.08□□□□□ -0.48
COL9A3-207ENST00000467819 KRTAP9-2Q9BYQ4 174 aa12.08□□□□□ -0.48
COL9A3-207ENST00000467819 PPDPFQ9H3Y8 114 aa12.06□□□□□ -0.48
COL9A3-207ENST00000467819 TMEM223A0PJW6 202 aa12.05□□□□□ -0.48
COL9A3-207ENST00000467819 ATP6V1G1O75348 118 aa12.04□□□□□ -0.48
COL9A3-207ENST00000467819 SMIM13P0DJ93 91 aa12.04□□□□□ -0.48
COL9A3-207ENST00000467819 SPAG11AQ6PDA7 123 aa12.04□□□□□ -0.48
COL9A3-207ENST00000467819 ZNF706Q9Y5V0 76 aaPredicted RBP12.04□□□□□ -0.48
COL9A3-207ENST00000467819 NCR3O14931 201 aa12.03□□□□□ -0.48
COL9A3-207ENST00000467819 MEIG1Q5JSS6 88 aa12.03□□□□□ -0.48
COL9A3-207ENST00000467819 BOD1L2Q8IYS8 172 aa12.03□□□□□ -0.48
COL9A3-207ENST00000467819 PRYO14603 147 aa12.02□□□□□ -0.49
COL9A3-207ENST00000467819 TRAV12-1A0A0B4J245 112 aa12.01□□□□□ -0.49
COL9A3-207ENST00000467819 C4orf48Q5BLP8 95 aa12.01□□□□□ -0.49
COL9A3-207ENST00000467819 IFI27L1Q96BM0 104 aa12.01□□□□□ -0.49
COL9A3-207ENST00000467819 MIR7-3HGQ8N6C7 128 aa12□□□□□ -0.49
COL9A3-207ENST00000467819 DAND5Q8N907 189 aa12□□□□□ -0.49
COL9A3-207ENST00000467819 APOC3P02656 99 aa11.99□□□□□ -0.49
COL9A3-207ENST00000467819 Q8NBF4 154 aa11.99□□□□□ -0.49
COL9A3-207ENST00000467819 LINC00337Q8N6G1 96 aa11.98□□□□□ -0.49
COL9A3-207ENST00000467819 SMCR5Q8TEV8 140 aa11.98□□□□□ -0.49
COL9A3-207ENST00000467819 ETDCA0A1B0GVM5 59 aa11.97□□□□□ -0.49
COL9A3-207ENST00000467819 SPRR1AP35321 89 aa11.97□□□□□ -0.49
COL9A3-207ENST00000467819 FP248Q71RG6 208 aaPredicted RBP11.97□□□□□ -0.49
COL9A3-207ENST00000467819 CHCHD1Q96BP2 118 aaKnown RBP11.97□□□□□ -0.49
COL9A3-207ENST00000467819 HERV-K104P63124 156 aa11.96□□□□□ -0.49
COL9A3-207ENST00000467819 KCNQ1DNQ9H478 68 aa11.96□□□□□ -0.49
COL9A3-207ENST00000467819 TRBV10-3A0A0K0K1G6 114 aa11.95□□□□□ -0.5
COL9A3-207ENST00000467819 NDUFA12Q9UI09 145 aa11.95□□□□□ -0.5
COL9A3-207ENST00000467819 KRTAP4-16G5E9R7 235 aaPredicted RBP11.94□□□□□ -0.5
COL9A3-207ENST00000467819 SNAPINO95295 136 aa11.94□□□□□ -0.5
COL9A3-207ENST00000467819 H0Y8G0 127 aa11.92□□□□□ -0.5
COL9A3-207ENST00000467819 NDUFA5Q16718 116 aa11.92□□□□□ -0.5
COL9A3-207ENST00000467819 SVBPQ8N300 66 aa11.92□□□□□ -0.5
COL9A3-207ENST00000467819 MYMXA0A1B0GTQ4 84 aa11.91□□□□□ -0.5
COL9A3-207ENST00000467819 LINC00587B1AMM8 73 aa11.91□□□□□ -0.5
COL9A3-207ENST00000467819 KRTAP13-3Q3SY46 172 aa11.91□□□□□ -0.5
COL9A3-207ENST00000467819 FAM19A2Q8N3H0 131 aa11.91□□□□□ -0.5
COL9A3-207ENST00000467819 GAGE2AQ6NT46 116 aa11.9□□□□□ -0.5
COL9A3-207ENST00000467819 YPEL4Q96NS1 127 aa11.9□□□□□ -0.5
COL9A3-207ENST00000467819 MAP1LC3CQ9BXW4 147 aa11.9□□□□□ -0.5
COL9A3-207ENST00000467819 HSBP1O75506 76 aa11.89□□□□□ -0.51
COL9A3-207ENST00000467819 SPINK1P00995 79 aa11.89□□□□□ -0.51
COL9A3-207ENST00000467819 S100A12P80511 92 aa11.89□□□□□ -0.51
COL9A3-207ENST00000467819 LINC00483Q53H64 154 aa11.89□□□□□ -0.51
COL9A3-207ENST00000467819 TSPEAR-AS2P59090 65 aa11.88□□□□□ -0.51
COL9A3-207ENST00000467819 IGLV9-49A0A0B4J1Y8 123 aa11.87□□□□□ -0.51
COL9A3-207ENST00000467819 B5MCH6 92 aa11.87□□□□□ -0.51
COL9A3-207ENST00000467819 MOBPQ13875 183 aa11.87□□□□□ -0.51
COL9A3-207ENST00000467819 ERC2-IT1O76042 136 aa11.86□□□□□ -0.51
COL9A3-207ENST00000467819 DDTP30046 118 aa11.85□□□□□ -0.51
COL9A3-207ENST00000467819 LEPROTO15243 131 aa11.84□□□□□ -0.51
COL9A3-207ENST00000467819 ASB16-AS1Q495Z4 193 aa11.83□□□□□ -0.52
COL9A3-207ENST00000467819 Q9BRP9 147 aa11.82□□□□□ -0.52
COL9A3-207ENST00000467819 LOC107984156A0A0G2JMH3 177 aa11.81□□□□□ -0.52
COL9A3-207ENST00000467819 TRBV10-2A0A0K0K1G8 114 aa11.81□□□□□ -0.52
COL9A3-207ENST00000467819 LEPROTL1O95214 131 aa11.81□□□□□ -0.52
COL9A3-207ENST00000467819 ARL17AQ8IVW1 177 aa11.81□□□□□ -0.52
COL9A3-207ENST00000467819 Q6ZRX8 168 aa11.8□□□□□ -0.52
COL9A3-207ENST00000467819 SSBP3-AS1Q7Z2R9 100 aa11.8□□□□□ -0.52
COL9A3-207ENST00000467819 Q8N377 158 aa11.8□□□□□ -0.52
COL9A3-207ENST00000467819 MIEN1Q9BRT3 115 aa11.8□□□□□ -0.52
COL9A3-207ENST00000467819 J3QQQ9 107 aa11.79□□□□□ -0.52
COL9A3-207ENST00000467819 SPANXB1Q9NS25 103 aaPredicted RBP11.79□□□□□ -0.52
COL9A3-207ENST00000467819 PLNP26678 52 aa11.78□□□□□ -0.52
COL9A3-207ENST00000467819 SERF1AO75920 110 aa11.77□□□□□ -0.53
COL9A3-207ENST00000467819 HERVK_113P61574 105 aa11.77□□□□□ -0.53
COL9A3-207ENST00000467819 RPS29P62273 56 aaKnown RBP11.77□□□□□ -0.53
COL9A3-207ENST00000467819 S100A7L2Q5SY68 101 aa11.77□□□□□ -0.53
COL9A3-207ENST00000467819 PMCHL2Q9BQD1 86 aa11.77□□□□□ -0.53
COL9A3-207ENST00000467819 KRTAP4-1Q9BYQ7 146 aa11.77□□□□□ -0.53
COL9A3-207ENST00000467819 KRTAP9-6A0A140TA67 174 aa11.76□□□□□ -0.53
COL9A3-207ENST00000467819 TRGC2P03986 189 aa11.76□□□□□ -0.53
COL9A3-207ENST00000467819 LGALS3P17931 250 aaKnown RBP11.76□□□□□ -0.53
COL9A3-207ENST00000467819 LINC00310P59036 64 aa11.76□□□□□ -0.53
COL9A3-207ENST00000467819 SEC61BP60468 96 aaKnown RBP11.76□□□□□ -0.53
COL9A3-207ENST00000467819 DPM2O94777 84 aa11.75□□□□□ -0.53
COL9A3-207ENST00000467819 IGLV6-57P01721 117 aa11.75□□□□□ -0.53
COL9A3-207ENST00000467819 C9orf153Q5TBE3 101 aa11.75□□□□□ -0.53
COL9A3-207ENST00000467819 TRAV23DV6A0A075B6W5 121 aa11.74□□□□□ -0.53
COL9A3-207ENST00000467819 SLC25A20O43772 301 aa11.74□□□□□ -0.53
COL9A3-207ENST00000467819 FABP4P15090 132 aa11.74□□□□□ -0.53
COL9A3-207ENST00000467819 NMUP48645 174 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms