RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FBN1P35555 2871 aaKnown RBP10.1□□□□□ -0.79
LDLR-202ENST00000455727 ANK2Q01484 3957 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 PKD1L1Q8TDX9 2849 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 NCR3O14931 201 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 S100A7L2Q5SY68 101 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 C11orf45Q8TAV5 145 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 C6orf48Q9UBA6 75 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 DNAH3Q8TD57 4116 aa10.09□□□□□ -0.79
LDLR-202ENST00000455727 DEFB131BA0A096LNP1 70 aa10.08□□□□□ -0.8
LDLR-202ENST00000455727 LINC00643Q86TS7 51 aa10.08□□□□□ -0.8
LDLR-202ENST00000455727 STAB1Q9NY15 2570 aa10.08□□□□□ -0.8
LDLR-202ENST00000455727 SLPIP03973 132 aa10.07□□□□□ -0.8
LDLR-202ENST00000455727 C9orf129Q5T035 196 aaKnown RBP10.07□□□□□ -0.8
LDLR-202ENST00000455727 IGLV6-57P01721 117 aa10.07□□□□□ -0.8
LDLR-202ENST00000455727 C6orf99Q4VX62 202 aa10.07□□□□□ -0.8
LDLR-202ENST00000455727 LINC01556Q5JQF7 62 aa10.07□□□□□ -0.8
LDLR-202ENST00000455727 IMUPQ9GZP8 106 aa10.07□□□□□ -0.8
LDLR-202ENST00000455727 ZNF561-AS1K7EIQ3 104 aa10.06□□□□□ -0.8
LDLR-202ENST00000455727 FLNBO75369 2602 aaKnown RBP10.06□□□□□ -0.8
LDLR-202ENST00000455727 B5MCH6 92 aa10.06□□□□□ -0.8
LDLR-202ENST00000455727 GAGE2AQ6NT46 116 aa10.06□□□□□ -0.8
LDLR-202ENST00000455727 SMCR5Q8TEV8 140 aa10.06□□□□□ -0.8
LDLR-202ENST00000455727 TMEM256-PLSCR3K7ERE1 68 aa10.05□□□□□ -0.8
LDLR-202ENST00000455727 CCDC179H3BU77 68 aa10.05□□□□□ -0.8
LDLR-202ENST00000455727 C2orf48Q96LS8 159 aa10.05□□□□□ -0.8
LDLR-202ENST00000455727 C14orf132Q9NPU4 83 aa10.05□□□□□ -0.8
LDLR-202ENST00000455727 LINC00575Q6W349 94 aa10.04□□□□□ -0.8
LDLR-202ENST00000455727 CAMK2N2Q96S95 79 aa10.04□□□□□ -0.8
LDLR-202ENST00000455727 F8WDY8 70 aa10.04□□□□□ -0.8
LDLR-202ENST00000455727 TENM3Q9P273 2699 aa10.03□□□□□ -0.8
LDLR-202ENST00000455727 JMJD7-PLA2G4BH0Y9G9 81 aa10.03□□□□□ -0.8
LDLR-202ENST00000455727 RPL18AQ02543 176 aaKnown RBP10.03□□□□□ -0.8
LDLR-202ENST00000455727 C15orf56Q8N910 161 aa10.03□□□□□ -0.8
LDLR-202ENST00000455727 C1orf43Q9BWL3 253 aa10.02□□□□□ -0.8
LDLR-202ENST00000455727 HIGD2BQ4VC39 106 aa10.02□□□□□ -0.81
LDLR-202ENST00000455727 SS18L2Q9UHA2 77 aa10.02□□□□□ -0.81
LDLR-202ENST00000455727 MAST4O15021 2626 aa10.02□□□□□ -0.81
LDLR-202ENST00000455727 DNAH10OSP0CZ25 163 aa10.01□□□□□ -0.81
LDLR-202ENST00000455727 XAGE1AQ9HD64 81 aa10□□□□□ -0.81
LDLR-202ENST00000455727 Q6ZRU5 148 aa10□□□□□ -0.81
LDLR-202ENST00000455727 hADV29S1A0JD25 119 aa9.99□□□□□ -0.81
LDLR-202ENST00000455727 TRAV10A0A0B4J240 114 aa9.99□□□□□ -0.81
LDLR-202ENST00000455727 NDUFC2-KCTD14E9PQ53 114 aa9.99□□□□□ -0.81
LDLR-202ENST00000455727 TRBV10-3A0A0K0K1G6 114 aa9.98□□□□□ -0.81
LDLR-202ENST00000455727 TM2D3Q9BRN9 247 aa9.98□□□□□ -0.81
LDLR-202ENST00000455727 TRAV23DV6A0A075B6W5 121 aa9.98□□□□□ -0.81
LDLR-202ENST00000455727 CCKP06307 115 aa9.98□□□□□ -0.81
LDLR-202ENST00000455727 VPREB1P12018 145 aa9.98□□□□□ -0.81
LDLR-202ENST00000455727 IGKV2D-24A0A075B6R9 120 aa9.97□□□□□ -0.81
LDLR-202ENST00000455727 H3BQ85 93 aa9.97□□□□□ -0.81
LDLR-202ENST00000455727 SVIPQ8NHG7 77 aa9.97□□□□□ -0.81
LDLR-202ENST00000455727 FAM236AA0A1B0GUQ0 79 aa9.96□□□□□ -0.81
LDLR-202ENST00000455727 FAM236BA0A1B0GV22 79 aa9.96□□□□□ -0.81
LDLR-202ENST00000455727 TRBV7-6A0A0J9YX20 115 aa9.96□□□□□ -0.82
LDLR-202ENST00000455727 DIRC1Q969H9 104 aa9.96□□□□□ -0.82
LDLR-202ENST00000455727 LINC00846Q9NV44 126 aa9.95□□□□□ -0.82
LDLR-202ENST00000455727 M0R378 163 aa9.95□□□□□ -0.82
LDLR-202ENST00000455727 BAHCC1Q9P281 2608 aa9.94□□□□□ -0.82
LDLR-202ENST00000455727 ZNF73O43830 326 aaPredicted RBP9.94□□□□□ -0.82
LDLR-202ENST00000455727 SYCNQ0VAF6 134 aa9.93□□□□□ -0.82
LDLR-202ENST00000455727 Q6JHZ5 121 aa9.92□□□□□ -0.82
LDLR-202ENST00000455727 LINC00588Q9Y4M8 146 aa9.92□□□□□ -0.82
LDLR-202ENST00000455727 NOTCH1P46531 2555 aa9.92□□□□□ -0.82
LDLR-202ENST00000455727 K7EIL1 84 aa9.91□□□□□ -0.82
LDLR-202ENST00000455727 ELOF1P60002 83 aaKnown RBP9.91□□□□□ -0.82
LDLR-202ENST00000455727 Q6ZRP5 223 aa9.91□□□□□ -0.82
LDLR-202ENST00000455727 COX7BP24311 80 aa9.91□□□□□ -0.82
LDLR-202ENST00000455727 GHRHP01286 108 aa9.9□□□□□ -0.82
LDLR-202ENST00000455727 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.9□□□□□ -0.82
LDLR-202ENST00000455727 Q6ZQY7 126 aa9.9□□□□□ -0.82
LDLR-202ENST00000455727 COL6A5A8TX70 2615 aa9.9□□□□□ -0.82
LDLR-202ENST00000455727 PRB2P02812 416 aaPredicted RBP9.89□□□□□ -0.83
LDLR-202ENST00000455727 RBM3P98179 157 aaKnown RBP9.89□□□□□ -0.83
LDLR-202ENST00000455727 LOC110117498A0A087WWA1 95 aa9.89□□□□□ -0.83
LDLR-202ENST00000455727 TLX1NBP0CAT3 122 aa9.88□□□□□ -0.83
LDLR-202ENST00000455727 LAMTOR3Q9UHA4 124 aa9.87□□□□□ -0.83
LDLR-202ENST00000455727 Q6ZQT0 140 aa9.87□□□□□ -0.83
LDLR-202ENST00000455727 MRAPQ8TCY5 172 aa9.87□□□□□ -0.83
LDLR-202ENST00000455727 UPK3BQ9BT76 320 aa9.87□□□□□ -0.83
LDLR-202ENST00000455727 HUWE1Q7Z6Z7 4374 aaKnown RBP9.87□□□□□ -0.83
LDLR-202ENST00000455727 NBEAL1Q6ZS30 2694 aa9.86□□□□□ -0.83
LDLR-202ENST00000455727 RMI2Q96E14 147 aa9.86□□□□□ -0.83
LDLR-202ENST00000455727 PDE6GP18545 87 aa9.85□□□□□ -0.83
LDLR-202ENST00000455727 HIST1H4AP62805 103 aaKnown RBP9.85□□□□□ -0.83
LDLR-202ENST00000455727 LINC00528Q8N1L1 170 aa9.85□□□□□ -0.83
LDLR-202ENST00000455727 PLA2G2DQ9UNK4 145 aa9.85□□□□□ -0.83
LDLR-202ENST00000455727 C3orf22Q8N5N4 141 aa9.84□□□□□ -0.83
LDLR-202ENST00000455727 IGKV3D-7A0A0C4DH55 119 aa9.83□□□□□ -0.84
LDLR-202ENST00000455727 USP17L23D6RBM5 183 aa9.83□□□□□ -0.84
LDLR-202ENST00000455727 ATP5EP2Q5VTU8 51 aa9.83□□□□□ -0.84
LDLR-202ENST00000455727 DSCR8Q96T75 97 aa9.83□□□□□ -0.84
LDLR-202ENST00000455727 KCNQ1DNQ9H478 68 aa9.83□□□□□ -0.84
LDLR-202ENST00000455727 UQCRQO14949 82 aa9.82□□□□□ -0.84
LDLR-202ENST00000455727 DNAH1Q9P2D7 4330 aa9.82□□□□□ -0.84
LDLR-202ENST00000455727 NKAPP1Q8N9T2 125 aa9.82□□□□□ -0.84
LDLR-202ENST00000455727 UBL5Q9BZL1 73 aa9.81□□□□□ -0.84
LDLR-202ENST00000455727 C9orf153Q5TBE3 101 aa9.81□□□□□ -0.84
LDLR-202ENST00000455727 SERTAD4-AS1Q5TG53 156 aa9.8□□□□□ -0.84
LDLR-202ENST00000455727 IGLV5-37A0A075B6J1 123 aa9.79□□□□□ -0.84
LDLR-202ENST00000455727 ATOX1O00244 68 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms