RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 IGKV2-28A0A075B6P5 120 aa11.48□□□□□ -0.57
USP40-207ENST00000450940 IGKV2D-28P01615 120 aa11.48□□□□□ -0.57
USP40-207ENST00000450940 Q8NDZ9 215 aa11.48□□□□□ -0.57
USP40-207ENST00000450940 HSBP1O75506 76 aa11.47□□□□□ -0.57
USP40-207ENST00000450940 A0A087X002 238 aa11.46□□□□□ -0.57
USP40-207ENST00000450940 TRGC2P03986 189 aa11.46□□□□□ -0.57
USP40-207ENST00000450940 UBE2AP49459 152 aa11.46□□□□□ -0.57
USP40-207ENST00000450940 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.57
USP40-207ENST00000450940 CRYGAP11844 174 aa11.45□□□□□ -0.58
USP40-207ENST00000450940 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
USP40-207ENST00000450940 LPAP08519 4548 aa11.45□□□□□ -0.58
USP40-207ENST00000450940 LINC00158P58513 81 aa11.44□□□□□ -0.58
USP40-207ENST00000450940 LINC00310P59036 64 aa11.43□□□□□ -0.58
USP40-207ENST00000450940 TMEM238C9JI98 176 aa11.42□□□□□ -0.58
USP40-207ENST00000450940 M0R378 163 aa11.42□□□□□ -0.58
USP40-207ENST00000450940 FAM229BQ4G0N7 80 aa11.41□□□□□ -0.58
USP40-207ENST00000450940 SERF1AO75920 110 aa11.4□□□□□ -0.58
USP40-207ENST00000450940 HERV-K104P63124 156 aa11.4□□□□□ -0.58
USP40-207ENST00000450940 TYMSOSQ8TAI1 123 aa11.4□□□□□ -0.58
USP40-207ENST00000450940 ANAPC11Q9NYG5 84 aa11.4□□□□□ -0.58
USP40-207ENST00000450940 LEPROTL1O95214 131 aa11.39□□□□□ -0.59
USP40-207ENST00000450940 SMIM13P0DJ93 91 aa11.39□□□□□ -0.59
USP40-207ENST00000450940 PRLHP81277 87 aa11.39□□□□□ -0.59
USP40-207ENST00000450940 KRTAP13-2Q52LG2 175 aa11.39□□□□□ -0.59
USP40-207ENST00000450940 FAM19A1Q7Z5A9 133 aa11.39□□□□□ -0.59
USP40-207ENST00000450940 A0A0U1RRA0 63 aa11.38□□□□□ -0.59
USP40-207ENST00000450940 COLCA2A8K830 154 aa11.38□□□□□ -0.59
USP40-207ENST00000450940 LINC00587B1AMM8 73 aa11.37□□□□□ -0.59
USP40-207ENST00000450940 NDUFA12Q9UI09 145 aa11.37□□□□□ -0.59
USP40-207ENST00000450940 MYMXA0A1B0GTQ4 84 aa11.35□□□□□ -0.59
USP40-207ENST00000450940 MEIG1Q5JSS6 88 aa11.35□□□□□ -0.59
USP40-207ENST00000450940 MIR7-3HGQ8N6C7 128 aa11.35□□□□□ -0.59
USP40-207ENST00000450940 PLEKHB2Q96CS7 222 aa11.35□□□□□ -0.59
USP40-207ENST00000450940 H0Y8G0 127 aa11.34□□□□□ -0.59
USP40-207ENST00000450940 PLNP26678 52 aa11.34□□□□□ -0.59
USP40-207ENST00000450940 PRR4Q16378 134 aa11.34□□□□□ -0.59
USP40-207ENST00000450940 BOD1L2Q8IYS8 172 aa11.34□□□□□ -0.59
USP40-207ENST00000450940 HSPB8Q9UJY1 196 aa11.34□□□□□ -0.59
USP40-207ENST00000450940 LEPROTO15243 131 aa11.33□□□□□ -0.6
USP40-207ENST00000450940 TSPAN13O95857 204 aa11.33□□□□□ -0.6
USP40-207ENST00000450940 TSPEAR-AS2P59090 65 aa11.33□□□□□ -0.6
USP40-207ENST00000450940 IGKV2D-26A0A0A0MRZ7 120 aa11.32□□□□□ -0.6
USP40-207ENST00000450940 LOC107984156A0A0G2JMH3 177 aa11.32□□□□□ -0.6
USP40-207ENST00000450940 ARL17AQ8IVW1 177 aa11.32□□□□□ -0.6
USP40-207ENST00000450940 MAP1LC3CQ9BXW4 147 aa11.32□□□□□ -0.6
USP40-207ENST00000450940 KCNQ1DNQ9H478 68 aa11.31□□□□□ -0.6
USP40-207ENST00000450940 PRYO14603 147 aa11.3□□□□□ -0.6
USP40-207ENST00000450940 DPM2O94777 84 aa11.3□□□□□ -0.6
USP40-207ENST00000450940 FABP4P15090 132 aa11.3□□□□□ -0.6
USP40-207ENST00000450940 SPRR1AP35321 89 aa11.3□□□□□ -0.6
USP40-207ENST00000450940 J3QQQ9 107 aa11.28□□□□□ -0.6
USP40-207ENST00000450940 CTAG1AP78358 180 aa11.28□□□□□ -0.6
USP40-207ENST00000450940 LINC00337Q8N6G1 96 aa11.28□□□□□ -0.6
USP40-207ENST00000450940 KRTAP4-16G5E9R7 235 aaPredicted RBP11.27□□□□□ -0.61
USP40-207ENST00000450940 NCR3O14931 201 aa11.27□□□□□ -0.61
USP40-207ENST00000450940 IGKCP01834 107 aa11.27□□□□□ -0.61
USP40-207ENST00000450940 NMUP48645 174 aa11.27□□□□□ -0.61
USP40-207ENST00000450940 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.61
USP40-207ENST00000450940 HIGD2AQ9BW72 106 aa11.27□□□□□ -0.61
USP40-207ENST00000450940 HERVK_113P61574 105 aa11.26□□□□□ -0.61
USP40-207ENST00000450940 SPRR4Q96PI1 79 aa11.26□□□□□ -0.61
USP40-207ENST00000450940 PMCHL2Q9BQD1 86 aa11.26□□□□□ -0.61
USP40-207ENST00000450940 TRBV10-3A0A0K0K1G6 114 aa11.24□□□□□ -0.61
USP40-207ENST00000450940 TMA7Q9Y2S6 64 aaKnown RBP11.24□□□□□ -0.61
USP40-207ENST00000450940 TRBV10-2A0A0K0K1G8 114 aa11.23□□□□□ -0.61
USP40-207ENST00000450940 DAND5Q8N907 189 aa11.23□□□□□ -0.61
USP40-207ENST00000450940 LGALS3P17931 250 aaKnown RBP11.22□□□□□ -0.61
USP40-207ENST00000450940 C3orf22Q8N5N4 141 aa11.22□□□□□ -0.61
USP40-207ENST00000450940 ZNF706Q9Y5V0 76 aaPredicted RBP11.22□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BKO60814 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BJP06899 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BOP23527 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BBP33778 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BDP58876 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BCP62807 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST2H2BEQ16778 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BHQ93079 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BNQ99877 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 HIST1H2BMQ99879 126 aa11.21□□□□□ -0.61
USP40-207ENST00000450940 ETDCA0A1B0GVM5 59 aa11.2□□□□□ -0.62
USP40-207ENST00000450940 SMCR5Q8TEV8 140 aa11.2□□□□□ -0.62
USP40-207ENST00000450940 E9PLD3 99 aa11.19□□□□□ -0.62
USP40-207ENST00000450940 NDUFC2O95298 119 aa11.19□□□□□ -0.62
USP40-207ENST00000450940 SYS1-DBNDD2H3BUS1 97 aa11.18□□□□□ -0.62
USP40-207ENST00000450940 S100A12P80511 92 aa11.18□□□□□ -0.62
USP40-207ENST00000450940 SPANXB1Q9NS25 103 aaPredicted RBP11.18□□□□□ -0.62
USP40-207ENST00000450940 A0A0J9YXY3 114 aa11.17□□□□□ -0.62
USP40-207ENST00000450940 B5MCH6 92 aa11.17□□□□□ -0.62
USP40-207ENST00000450940 DDTP30046 118 aa11.17□□□□□ -0.62
USP40-207ENST00000450940 SPAG11AQ6PDA7 123 aa11.16□□□□□ -0.62
USP40-207ENST00000450940 MIEN1Q9BRT3 115 aa11.16□□□□□ -0.62
USP40-207ENST00000450940 IGLV6-57P01721 117 aa11.15□□□□□ -0.62
USP40-207ENST00000450940 LINC00483Q53H64 154 aa11.15□□□□□ -0.62
USP40-207ENST00000450940 ADAMTSL4-AS1Q5T5F5 129 aa11.15□□□□□ -0.62
USP40-207ENST00000450940 SOSTDC1Q6X4U4 206 aa11.15□□□□□ -0.62
USP40-207ENST00000450940 RETNLBQ9BQ08 111 aa11.15□□□□□ -0.62
USP40-207ENST00000450940 EIF4EBP3O60516 100 aaPredicted RBP11.14□□□□□ -0.63
USP40-207ENST00000450940 LINC01545Q5VT33 79 aa11.14□□□□□ -0.63
USP40-207ENST00000450940 MUC2Q02817 5179 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms