RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 TIMM17BO60830 172 aa11.03□□□□□ -0.64
PRPF40A-204ENST00000450303 SPAG11BQ08648 103 aa11.03□□□□□ -0.64
PRPF40A-204ENST00000450303 C15orf56Q8N910 161 aa11.03□□□□□ -0.64
PRPF40A-204ENST00000450303 COPS9Q8WXC6 57 aa11.03□□□□□ -0.64
PRPF40A-204ENST00000450303 TOMM7Q9P0U1 55 aa11.03□□□□□ -0.64
PRPF40A-204ENST00000450303 FLG2Q5D862 2391 aaPredicted RBP11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 GVQW2A0A096LPI5 108 aaPredicted RBP11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 F8WDY8 70 aa11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 NDUFA1O15239 70 aa11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 C6orf226Q5I0X4 101 aa11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 LINC00528Q8N1L1 170 aa11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 NAA38Q9BRA0 125 aaKnown RBP11.02□□□□□ -0.65
PRPF40A-204ENST00000450303 HIGD2BQ4VC39 106 aa11.01□□□□□ -0.65
PRPF40A-204ENST00000450303 Q8IZM0 81 aa11.01□□□□□ -0.65
PRPF40A-204ENST00000450303 COX7B2Q8TF08 81 aa11.01□□□□□ -0.65
PRPF40A-204ENST00000450303 SPANXDQ9BXN6 97 aa11.01□□□□□ -0.65
PRPF40A-204ENST00000450303 SPANXCQ9NY87 97 aa11.01□□□□□ -0.65
PRPF40A-204ENST00000450303 IGLV5-39A0A0G2JS06 123 aa11□□□□□ -0.65
PRPF40A-204ENST00000450303 C2orf48Q96LS8 159 aa11□□□□□ -0.65
PRPF40A-204ENST00000450303 KRTAP3-3Q9BYR6 98 aa11□□□□□ -0.65
PRPF40A-204ENST00000450303 KRTAP3-2Q9BYR7 98 aa11□□□□□ -0.65
PRPF40A-204ENST00000450303 IFITM1P13164 125 aa10.99□□□□□ -0.65
PRPF40A-204ENST00000450303 CXCL5P42830 114 aa10.99□□□□□ -0.65
PRPF40A-204ENST00000450303 CKS1BP61024 79 aa10.99□□□□□ -0.65
PRPF40A-204ENST00000450303 HERV-K104P63124 156 aa10.99□□□□□ -0.65
PRPF40A-204ENST00000450303 CIRBP-AS1Q8TBR5 109 aa10.99□□□□□ -0.65
PRPF40A-204ENST00000450303 PLA2G1BP04054 148 aaKnown RBP10.98□□□□□ -0.65
PRPF40A-204ENST00000450303 A0A0B4J2C4 111 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 KIAA0087Q14695 138 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 SFTA2Q6UW10 78 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 MUSTN1Q8IVN3 82 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 CAMK2N2Q96S95 79 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 PRO1854Q9UHT4 67 aa10.97□□□□□ -0.65
PRPF40A-204ENST00000450303 A4D1N5 150 aa10.96□□□□□ -0.65
PRPF40A-204ENST00000450303 SYCNQ0VAF6 134 aa10.95□□□□□ -0.66
PRPF40A-204ENST00000450303 C9orf163Q8N9P6 203 aa10.95□□□□□ -0.66
PRPF40A-204ENST00000450303 LINC00526Q96FQ7 95 aa10.95□□□□□ -0.66
PRPF40A-204ENST00000450303 CFC1BP0CG36 223 aa10.94□□□□□ -0.66
PRPF40A-204ENST00000450303 CFC1P0CG37 223 aa10.94□□□□□ -0.66
PRPF40A-204ENST00000450303 ERG28Q9UKR5 140 aa10.94□□□□□ -0.66
PRPF40A-204ENST00000450303 TSPAN13O95857 204 aa10.93□□□□□ -0.66
PRPF40A-204ENST00000450303 CNBPP62633 177 aaKnown RBP10.93□□□□□ -0.66
PRPF40A-204ENST00000450303 MEIG1Q5JSS6 88 aa10.93□□□□□ -0.66
PRPF40A-204ENST00000450303 CARD19Q96LW7 228 aa10.93□□□□□ -0.66
PRPF40A-204ENST00000450303 DMBT1Q9UGM3 2413 aaPredicted RBP10.93□□□□□ -0.66
PRPF40A-204ENST00000450303 MYCBP2O75592 4640 aa10.92□□□□□ -0.66
PRPF40A-204ENST00000450303 LOC107984156A0A0G2JMH3 177 aa10.92□□□□□ -0.66
PRPF40A-204ENST00000450303 ARL17AQ8IVW1 177 aa10.92□□□□□ -0.66
PRPF40A-204ENST00000450303 LITAFQ99732 161 aa10.92□□□□□ -0.66
PRPF40A-204ENST00000450303 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.92□□□□□ -0.66
PRPF40A-204ENST00000450303 TRBV20-1A0A075B6N2 111 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 TRBV30A0A0K0K1B3 111 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 PANO1I0J062 215 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 SLPIP03973 132 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 SCGB1C2P0DMR2 95 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 PSMB2P49721 201 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 Q1RN00 199 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 C2orf82Q6UX34 121 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 UNQ6190/PRO20217Q6UXQ8 127 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 SDIM1Q6ZPB5 146 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 PKIGQ9Y2B9 76 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 HERC1Q15751 4861 aa10.91□□□□□ -0.66
PRPF40A-204ENST00000450303 F8W1H4 67 aa10.9□□□□□ -0.66
PRPF40A-204ENST00000450303 RNF151Q2KHN1 245 aa10.9□□□□□ -0.66
PRPF40A-204ENST00000450303 Q6ZRU5 148 aa10.9□□□□□ -0.66
PRPF40A-204ENST00000450303 K7ERU9 68 aa10.89□□□□□ -0.67
PRPF40A-204ENST00000450303 KRTAP10-4P60372 401 aaPredicted RBP10.89□□□□□ -0.67
PRPF40A-204ENST00000450303 ZNF625Q96I27 306 aaPredicted RBP10.89□□□□□ -0.67
PRPF40A-204ENST00000450303 PPDPFQ9H3Y8 114 aa10.89□□□□□ -0.67
PRPF40A-204ENST00000450303 ADAMTSL4-AS1Q5T5F5 129 aa10.87□□□□□ -0.67
PRPF40A-204ENST00000450303 C10orf25Q5T742 122 aa10.87□□□□□ -0.67
PRPF40A-204ENST00000450303 C6orf48Q9UBA6 75 aa10.87□□□□□ -0.67
PRPF40A-204ENST00000450303 J3QL48 77 aa10.86□□□□□ -0.67
PRPF40A-204ENST00000450303 COX6CP09669 75 aa10.86□□□□□ -0.67
PRPF40A-204ENST00000450303 OCIAD2Q56VL3 154 aa10.86□□□□□ -0.67
PRPF40A-204ENST00000450303 CHTF8P0CG12 524 aa10.85□□□□□ -0.67
PRPF40A-204ENST00000450303 LINC00308Q8TCZ7 52 aa10.85□□□□□ -0.67
PRPF40A-204ENST00000450303 DPH3Q96FX2 82 aa10.85□□□□□ -0.67
PRPF40A-204ENST00000450303 LOC107984640A0A0U1RRK4 108 aa10.84□□□□□ -0.67
PRPF40A-204ENST00000450303 H3BMG7 143 aa10.84□□□□□ -0.67
PRPF40A-204ENST00000450303 RPL37AP61513 92 aaKnown RBP10.84□□□□□ -0.67
PRPF40A-204ENST00000450303 COX17Q14061 63 aa10.84□□□□□ -0.67
PRPF40A-204ENST00000450303 H7C2G1 150 aa10.83□□□□□ -0.68
PRPF40A-204ENST00000450303 NPC2P61916 151 aa10.83□□□□□ -0.68
PRPF40A-204ENST00000450303 J3QR89 54 aa10.82□□□□□ -0.68
PRPF40A-204ENST00000450303 TLX1NBP0CAT3 122 aa10.82□□□□□ -0.68
PRPF40A-204ENST00000450303 PFN2P35080 140 aa10.81□□□□□ -0.68
PRPF40A-204ENST00000450303 LINC00158P58513 81 aa10.81□□□□□ -0.68
PRPF40A-204ENST00000450303 ATXN8Q156A1 80 aa10.81□□□□□ -0.68
PRPF40A-204ENST00000450303 C9orf116Q5BN46 136 aaPredicted RBP10.81□□□□□ -0.68
PRPF40A-204ENST00000450303 A0A0U1RRA0 63 aa10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 KRTAP29-1A8MX34 341 aaPredicted RBP10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 NDUFC2-KCTD14E9PQ53 114 aa10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 RPL13AP40429 203 aaKnown RBP10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 RPL18AQ02543 176 aaKnown RBP10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 DAND5Q8N907 189 aa10.8□□□□□ -0.68
PRPF40A-204ENST00000450303 A0A087WYN8 130 aa10.79□□□□□ -0.68
PRPF40A-204ENST00000450303 CBY1Q9Y3M2 126 aa10.79□□□□□ -0.68
PRPF40A-204ENST00000450303 TCL1BO95988 128 aa10.78□□□□□ -0.68
PRPF40A-204ENST00000450303 SPACA4Q8TDM5 124 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms