RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 NPC2P61916 151 aa12.36□□□□□ -0.43
RPS28-202ENST00000449223 KRTAP10-2P60368 255 aa12.35□□□□□ -0.43
RPS28-202ENST00000449223 GAGE2EQ4V326 116 aa12.35□□□□□ -0.43
RPS28-202ENST00000449223 GAGE2DQ9UEU5 116 aa12.35□□□□□ -0.43
RPS28-202ENST00000449223 TMEM238LA0A1B0GVL6 79 aa12.34□□□□□ -0.43
RPS28-202ENST00000449223 A6NJY4 79 aa12.34□□□□□ -0.43
RPS28-202ENST00000449223 NDUFC2O95298 119 aa12.34□□□□□ -0.43
RPS28-202ENST00000449223 HINT1P49773 126 aaPredicted RBP12.34□□□□□ -0.43
RPS28-202ENST00000449223 C9orf129Q5T035 196 aaKnown RBP12.34□□□□□ -0.43
RPS28-202ENST00000449223 XAGE1AQ9HD64 81 aa12.34□□□□□ -0.43
RPS28-202ENST00000449223 A0A096LNI7 61 aa12.33□□□□□ -0.44
RPS28-202ENST00000449223 A4D1N5 150 aa12.33□□□□□ -0.44
RPS28-202ENST00000449223 PLA2G2DQ9UNK4 145 aa12.33□□□□□ -0.44
RPS28-202ENST00000449223 RYR3Q15413 4870 aa12.32□□□□□ -0.44
RPS28-202ENST00000449223 A0A1B0GVY2 172 aa12.32□□□□□ -0.44
RPS28-202ENST00000449223 GAGE2BQ13066 116 aa12.32□□□□□ -0.44
RPS28-202ENST00000449223 LINC00474Q9P2X8 69 aa12.32□□□□□ -0.44
RPS28-202ENST00000449223 DNAH5Q8TE73 4624 aa12.31□□□□□ -0.44
RPS28-202ENST00000449223 LINC01620Q4KN68 170 aa12.31□□□□□ -0.44
RPS28-202ENST00000449223 A0A1B0GWB2 263 aa12.3□□□□□ -0.44
RPS28-202ENST00000449223 Q8NDZ9 215 aa12.3□□□□□ -0.44
RPS28-202ENST00000449223 FUSP35637 526 aaKnown RBP eCLIP12.29□□□□□ -0.44
RPS28-202ENST00000449223 SNHG12Q9BXW3 62 aa12.29□□□□□ -0.44
RPS28-202ENST00000449223 A0A0B4J2C4 111 aa12.27□□□□□ -0.44
RPS28-202ENST00000449223 CFC1BP0CG36 223 aa12.27□□□□□ -0.44
RPS28-202ENST00000449223 CFC1P0CG37 223 aa12.27□□□□□ -0.44
RPS28-202ENST00000449223 VPREB1P12018 145 aa12.27□□□□□ -0.44
RPS28-202ENST00000449223 IGLV5-37A0A075B6J1 123 aa12.27□□□□□ -0.45
RPS28-202ENST00000449223 IGKV2-28A0A075B6P5 120 aa12.27□□□□□ -0.45
RPS28-202ENST00000449223 IGKV2D-28P01615 120 aa12.27□□□□□ -0.45
RPS28-202ENST00000449223 SPACA4Q8TDM5 124 aa12.27□□□□□ -0.45
RPS28-202ENST00000449223 IGKV2-24A0A0C4DH68 120 aa12.26□□□□□ -0.45
RPS28-202ENST00000449223 TRBV10-2A0A0K0K1G8 114 aa12.26□□□□□ -0.45
RPS28-202ENST00000449223 A6NDN8 102 aa12.26□□□□□ -0.45
RPS28-202ENST00000449223 NHP2Q9NX24 153 aaKnown RBP12.26□□□□□ -0.45
RPS28-202ENST00000449223 EPM2AB3EWF7 344 aa12.24□□□□□ -0.45
RPS28-202ENST00000449223 CHTF8P0CG12 524 aa12.24□□□□□ -0.45
RPS28-202ENST00000449223 KRTAP7-1Q8IUC3 87 aa12.24□□□□□ -0.45
RPS28-202ENST00000449223 PANO1I0J062 215 aa12.23□□□□□ -0.45
RPS28-202ENST00000449223 SERTAD4-AS1Q5TG53 156 aa12.23□□□□□ -0.45
RPS28-202ENST00000449223 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.23□□□□□ -0.45
RPS28-202ENST00000449223 FAM168BA1KXE4 195 aa12.22□□□□□ -0.45
RPS28-202ENST00000449223 BATFQ16520 125 aa12.22□□□□□ -0.45
RPS28-202ENST00000449223 LINC00337Q8N6G1 96 aa12.22□□□□□ -0.45
RPS28-202ENST00000449223 TRAV13-2A0A0B4J235 113 aa12.21□□□□□ -0.45
RPS28-202ENST00000449223 Q6ZSA8 131 aa12.21□□□□□ -0.45
RPS28-202ENST00000449223 PRR3P79522 188 aaKnown RBP12.21□□□□□ -0.46
RPS28-202ENST00000449223 A0A1W2PNN7 141 aa12.2□□□□□ -0.46
RPS28-202ENST00000449223 M0R378 163 aa12.2□□□□□ -0.46
RPS28-202ENST00000449223 PRO1854Q9UHT4 67 aa12.2□□□□□ -0.46
RPS28-202ENST00000449223 PKHD1P08F94 4074 aa12.2□□□□□ -0.46
RPS28-202ENST00000449223 RAB37Q96AX2 223 aa12.19□□□□□ -0.46
RPS28-202ENST00000449223 K7ERJ3 54 aa12.18□□□□□ -0.46
RPS28-202ENST00000449223 NCR3O14931 201 aa12.18□□□□□ -0.46
RPS28-202ENST00000449223 KRTAP10-1P60331 282 aa12.18□□□□□ -0.46
RPS28-202ENST00000449223 NKAPP1Q8N9T2 125 aa12.18□□□□□ -0.46
RPS28-202ENST00000449223 IGLV6-57P01721 117 aa12.17□□□□□ -0.46
RPS28-202ENST00000449223 FAM19A5Q7Z5A7 132 aaPredicted RBP12.17□□□□□ -0.46
RPS28-202ENST00000449223 C22orf24Q9Y442 160 aa12.17□□□□□ -0.46
RPS28-202ENST00000449223 DNAH8Q96JB1 4490 aa12.17□□□□□ -0.46
RPS28-202ENST00000449223 COL5A1-AS1Q5SY13 56 aa12.16□□□□□ -0.46
RPS28-202ENST00000449223 TMEM126AQ9H061 195 aa12.16□□□□□ -0.46
RPS28-202ENST00000449223 PLAC8Q9NZF1 115 aa12.16□□□□□ -0.46
RPS28-202ENST00000449223 LBHQ53QV2 105 aaPredicted RBP12.16□□□□□ -0.46
RPS28-202ENST00000449223 A0A087WYN8 130 aa12.15□□□□□ -0.46
RPS28-202ENST00000449223 MRPL55Q7Z7F7 128 aaKnown RBP12.15□□□□□ -0.46
RPS28-202ENST00000449223 M0QXV9 152 aa12.14□□□□□ -0.47
RPS28-202ENST00000449223 C7orf33Q8WU49 177 aa12.14□□□□□ -0.47
RPS28-202ENST00000449223 RPL13AP40429 203 aaKnown RBP12.13□□□□□ -0.47
RPS28-202ENST00000449223 FAM30AQ9NZY2 134 aa12.13□□□□□ -0.47
RPS28-202ENST00000449223 TRBV10-3A0A0K0K1G6 114 aa12.12□□□□□ -0.47
RPS28-202ENST00000449223 S100A7L2Q5SY68 101 aa12.12□□□□□ -0.47
RPS28-202ENST00000449223 TAX1BP3O14907 124 aa12.11□□□□□ -0.47
RPS28-202ENST00000449223 OR13C6PQ8NH95 151 aa12.11□□□□□ -0.47
RPS28-202ENST00000449223 LINC00167Q96N53 147 aa12.11□□□□□ -0.47
RPS28-202ENST00000449223 LRP1BQ9NZR2 4599 aa12.11□□□□□ -0.47
RPS28-202ENST00000449223 DPH3Q96FX2 82 aa12.11□□□□□ -0.47
RPS28-202ENST00000449223 IGLV1-50A0A075B6I6 118 aa12.1□□□□□ -0.47
RPS28-202ENST00000449223 TSPAN13O95857 204 aa12.1□□□□□ -0.47
RPS28-202ENST00000449223 CBY1Q9Y3M2 126 aa12.1□□□□□ -0.47
RPS28-202ENST00000449223 RPL28P46779 137 aaKnown RBP12.08□□□□□ -0.48
RPS28-202ENST00000449223 KCNQ1DNQ9H478 68 aa12.08□□□□□ -0.48
RPS28-202ENST00000449223 DYNC1H1Q14204 4646 aaKnown RBP12.08□□□□□ -0.48
RPS28-202ENST00000449223 CIRBP-AS1Q8TBR5 109 aa12.07□□□□□ -0.48
RPS28-202ENST00000449223 GAGE10A6NGK3 116 aa12.06□□□□□ -0.48
RPS28-202ENST00000449223 PHF5AQ7RTV0 110 aaKnown RBP12.06□□□□□ -0.48
RPS28-202ENST00000449223 SMIM11BQ8TCY0 68 aa12.06□□□□□ -0.48
RPS28-202ENST00000449223 TRAV23DV6A0A075B6W5 121 aa12.06□□□□□ -0.48
RPS28-202ENST00000449223 C9orf118A6NHY6 69 aa12.06□□□□□ -0.48
RPS28-202ENST00000449223 SCXQ7RTU7 201 aa12.06□□□□□ -0.48
RPS28-202ENST00000449223 H7C2G1 150 aa12.05□□□□□ -0.48
RPS28-202ENST00000449223 PRYO14603 147 aa12.05□□□□□ -0.48
RPS28-202ENST00000449223 Q1RN00 199 aa12.05□□□□□ -0.48
RPS28-202ENST00000449223 RPL37AP8A6NKH3 93 aa12.03□□□□□ -0.48
RPS28-202ENST00000449223 SPRR1AP35321 89 aa12.03□□□□□ -0.48
RPS28-202ENST00000449223 TRIAP1O43715 76 aa12.01□□□□□ -0.49
RPS28-202ENST00000449223 ZNF73O43830 326 aaPredicted RBP12.01□□□□□ -0.49
RPS28-202ENST00000449223 H3BUT2 72 aa12.01□□□□□ -0.49
RPS28-202ENST00000449223 TRBV7-6A0A0J9YX20 115 aa12□□□□□ -0.49
RPS28-202ENST00000449223 KRTAP4-16G5E9R7 235 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms